PDB Chemical Component TYB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TYB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.465 |
1.468 |
| N |
H |
1.021 |
1.009 |
| N |
H2 |
1.019 |
1.009 |
| CA |
C |
1.533 |
1.507 |
| CA |
CB |
1.525 |
1.530 |
| CA |
HA |
1.116 |
1.090 |
| C |
O |
1.471 |
1.207 |
| C |
HC |
1.103 |
1.080 |
| CB |
CG |
1.518 |
1.506 |
| CB |
HB2 |
1.115 |
1.089 |
| CB |
HB3 |
1.115 |
1.090 |
| CG |
CD1 |
1.387 |
1.382 |
| CG |
CD2 |
1.392 |
1.383 |
| CD1 |
CE1 |
1.395 |
1.382 |
| CD1 |
HD1 |
1.103 |
1.080 |
| CD2 |
CE2 |
1.386 |
1.382 |
| CD2 |
HD2 |
1.103 |
1.080 |
| CE1 |
CZ |
1.371 |
1.387 |
| CE1 |
HE1 |
1.103 |
1.080 |
| CE2 |
CZ |
1.382 |
1.386 |
| CE2 |
HE2 |
1.104 |
1.080 |
| CZ |
OH |
1.391 |
1.359 |
| OH |
HH |
0.950 |
0.966 |
Bond Angles for TYB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
111.0 |
106.7 |
| CA |
N |
H2 |
111.7 |
106.7 |
| N |
CA |
C |
111.0 |
109.5 |
| N |
CA |
CB |
109.7 |
109.5 |
| N |
CA |
HA |
108.5 |
109.5 |
| H |
N |
H2 |
111.6 |
106.7 |
| C |
CA |
CB |
110.2 |
109.5 |
| C |
CA |
HA |
108.1 |
109.5 |
| CA |
C |
O |
109.4 |
120.0 |
| CA |
C |
HC |
126.9 |
120.0 |
| CB |
CA |
HA |
109.3 |
109.4 |
| CA |
CB |
CG |
115.1 |
109.5 |
| CA |
CB |
HB2 |
110.1 |
109.5 |
| CA |
CB |
HB3 |
110.1 |
109.4 |
| O |
C |
HC |
123.6 |
120.0 |
| CG |
CB |
HB2 |
110.1 |
109.5 |
| CG |
CB |
HB3 |
110.1 |
109.5 |
| CB |
CG |
CD1 |
120.9 |
119.9 |
| CB |
CG |
CD2 |
120.0 |
119.9 |
| HB2 |
CB |
HB3 |
100.1 |
109.4 |
| CD1 |
CG |
CD2 |
119.1 |
120.1 |
| CG |
CD1 |
CE1 |
119.6 |
120.1 |
| CG |
CD1 |
HD1 |
120.0 |
120.0 |
| CG |
CD2 |
CE2 |
121.4 |
120.0 |
| CG |
CD2 |
HD2 |
119.5 |
120.0 |
| CE1 |
CD1 |
HD1 |
120.5 |
120.0 |
| CD1 |
CE1 |
CZ |
120.3 |
119.9 |
| CD1 |
CE1 |
HE1 |
120.7 |
120.0 |
| CE2 |
CD2 |
HD2 |
119.1 |
120.0 |
| CD2 |
CE2 |
CZ |
118.6 |
120.0 |
| CD2 |
CE2 |
HE2 |
120.9 |
119.9 |
| CZ |
CE1 |
HE1 |
118.9 |
120.0 |
| CE1 |
CZ |
CE2 |
121.0 |
119.9 |
| CE1 |
CZ |
OH |
120.9 |
120.1 |
| CZ |
CE2 |
HE2 |
120.5 |
120.1 |
| CE2 |
CZ |
OH |
118.1 |
120.0 |
| CZ |
OH |
HH |
120.9 |
106.8 |
Torsion Angles for TYB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
246.2 |
| C |
CA |
N |
CB |
122.0 |
120.0 |
| C |
CA |
N |
HA |
241.4 |
239.9 |
| N |
CA |
C |
O |
177.2 |
0.0 |
| N |
CA |
C |
HC |
357.3 |
179.9 |
| CB |
CA |
N |
HA |
119.4 |
120.0 |
| N |
CA |
CB |
CG |
288.0 |
300.0 |
| N |
CA |
CB |
HB2 |
53.2 |
60.0 |
| N |
CA |
CB |
HB3 |
162.8 |
180.0 |
| CA |
N |
H |
H2 |
234.7 |
113.8 |
| H |
N |
CA |
C |
180.0 |
60.0 |
| H |
N |
CA |
CB |
58.0 |
300.0 |
| H |
N |
CA |
HA |
298.6 |
180.0 |
| CA |
N |
H2 |
H |
124.9 |
246.2 |
| H2 |
N |
CA |
C |
54.7 |
173.8 |
| H2 |
N |
CA |
CB |
292.7 |
53.8 |
| H2 |
N |
CA |
HA |
173.3 |
293.8 |
| C |
CA |
N |
H |
180.0 |
60.0 |
| C |
CA |
N |
H2 |
54.7 |
173.8 |
| N |
CA |
C |
CB |
238.2 |
240.0 |
| N |
CA |
C |
HA |
118.8 |
120.0 |
| CB |
CA |
C |
HA |
240.6 |
240.0 |
| C |
CA |
CB |
CG |
165.5 |
180.0 |
| C |
CA |
CB |
HB2 |
290.7 |
300.0 |
| C |
CA |
CB |
HB3 |
40.2 |
60.0 |
| O |
C |
CA |
HC |
180.0 |
180.1 |
| CB |
CA |
N |
H |
58.0 |
300.0 |
| CB |
CA |
N |
H2 |
292.7 |
53.8 |
| N |
CA |
CB |
C |
122.5 |
120.0 |
| N |
CA |
CB |
HA |
241.2 |
240.0 |
| C |
CA |
CB |
HA |
118.6 |
120.0 |
| CB |
CA |
C |
O |
299.0 |
120.0 |
| CB |
CA |
C |
HC |
119.0 |
299.9 |
| CG |
CB |
CA |
HB2 |
234.8 |
240.0 |
| CG |
CB |
CA |
HB3 |
125.2 |
120.0 |
| CA |
CB |
CG |
CD1 |
142.1 |
90.0 |
| CA |
CB |
CG |
CD2 |
322.1 |
269.6 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
240.0 |
| HA |
CA |
N |
H |
298.6 |
180.0 |
| HA |
CA |
N |
H2 |
173.3 |
293.8 |
| N |
CA |
HA |
C |
239.6 |
240.0 |
| N |
CA |
HA |
CB |
119.6 |
120.0 |
| C |
CA |
HA |
CB |
240.1 |
240.0 |
| HA |
CA |
C |
O |
58.4 |
240.0 |
| HA |
CA |
C |
HC |
238.4 |
59.9 |
| HA |
CA |
CB |
CG |
46.8 |
60.0 |
| HA |
CA |
CB |
HB2 |
172.1 |
180.0 |
| HA |
CA |
CB |
HB3 |
281.6 |
300.0 |
| O |
C |
CA |
CB |
299.0 |
120.0 |
| O |
C |
CA |
HA |
58.4 |
240.0 |
| CA |
C |
O |
HC |
180.0 |
179.9 |
| HC |
C |
CA |
CB |
119.0 |
299.9 |
| HC |
C |
CA |
HA |
238.4 |
59.9 |
| CA |
C |
HC |
O |
180.0 |
180.1 |
| CG |
CB |
CA |
HA |
46.8 |
60.0 |
| CA |
CB |
CG |
HB2 |
125.2 |
120.0 |
| CA |
CB |
CG |
HB3 |
234.8 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
109.5 |
120.0 |
| CD1 |
CG |
CB |
CD2 |
180.0 |
180.4 |
| CB |
CG |
CD1 |
CE1 |
179.8 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
359.7 |
360.0 |
| CB |
CG |
CD2 |
CE2 |
180.0 |
179.8 |
| CB |
CG |
CD2 |
HD2 |
0.1 |
0.4 |
| HB2 |
CB |
CA |
HA |
172.1 |
180.0 |
| CA |
CB |
HB2 |
CG |
232.0 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
116.0 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
244.0 |
240.0 |
| HB2 |
CB |
CG |
CD1 |
16.9 |
330.0 |
| HB2 |
CB |
CG |
CD2 |
196.9 |
149.6 |
| HB3 |
CB |
CA |
HA |
281.6 |
300.0 |
| CA |
CB |
HB3 |
CG |
128.0 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
244.0 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
116.0 |
120.0 |
| HB3 |
CB |
CG |
CD1 |
267.4 |
210.0 |
| HB3 |
CB |
CG |
CD2 |
87.3 |
29.6 |
| CD1 |
CG |
CB |
HB2 |
16.9 |
330.0 |
| CD1 |
CG |
CB |
HB3 |
267.4 |
210.0 |
| CB |
CG |
CD1 |
CD2 |
180.0 |
179.6 |
| CD1 |
CG |
CD2 |
CE2 |
0.0 |
359.4 |
| CD1 |
CG |
CD2 |
HD2 |
180.1 |
180.0 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CG |
CD1 |
CE1 |
CZ |
0.5 |
359.9 |
| CG |
CD1 |
CE1 |
HE1 |
180.5 |
179.9 |
| CD2 |
CG |
CB |
HB2 |
196.9 |
149.6 |
| CD2 |
CG |
CB |
HB3 |
87.3 |
29.6 |
| CB |
CG |
CD2 |
CD1 |
180.0 |
180.4 |
| CD2 |
CG |
CD1 |
CE1 |
359.8 |
0.4 |
| CD2 |
CG |
CD1 |
HD1 |
179.7 |
180.4 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
179.4 |
| CG |
CD2 |
CE2 |
CZ |
359.9 |
0.6 |
| CG |
CD2 |
CE2 |
HE2 |
179.9 |
180.4 |
| CE1 |
CD1 |
CG |
CD2 |
359.8 |
0.4 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
179.9 |
| CD1 |
CE1 |
CZ |
CE2 |
359.3 |
0.1 |
| CD1 |
CE1 |
CZ |
OH |
179.9 |
180.0 |
| HD1 |
CD1 |
CG |
CD2 |
179.7 |
180.4 |
| CG |
CD1 |
HD1 |
CE1 |
180.1 |
180.0 |
| HD1 |
CD1 |
CE1 |
CZ |
180.6 |
179.9 |
| HD1 |
CD1 |
CE1 |
HE1 |
0.6 |
359.9 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.6 |
| CE1 |
CZ |
CE2 |
CD2 |
0.5 |
359.7 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.2 |
| CD2 |
CE2 |
CZ |
OH |
179.9 |
179.7 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
179.4 |
| HD2 |
CD2 |
CE2 |
CZ |
179.8 |
180.0 |
| HD2 |
CD2 |
CE2 |
HE2 |
359.8 |
359.8 |
| CZ |
CE1 |
CD1 |
HD1 |
180.6 |
179.9 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
180.1 |
| CD2 |
CE2 |
CZ |
CE1 |
0.5 |
359.7 |
| CE1 |
CZ |
CE2 |
HE2 |
180.4 |
179.9 |
| CE2 |
CZ |
CE1 |
OH |
179.4 |
180.0 |
| CE1 |
CZ |
OH |
HH |
180.1 |
90.1 |
| HE1 |
CE1 |
CD1 |
HD1 |
0.6 |
359.9 |
| CD1 |
CE1 |
HE1 |
CZ |
180.0 |
179.9 |
| HE1 |
CE1 |
CZ |
CE2 |
179.4 |
180.0 |
| HE1 |
CE1 |
CZ |
OH |
360.0 |
360.0 |
| CZ |
CE2 |
CD2 |
HD2 |
179.8 |
180.0 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
179.8 |
| CE2 |
CZ |
CE1 |
HE1 |
179.4 |
180.0 |
| CE1 |
CZ |
CE2 |
OH |
180.6 |
180.0 |
| CE2 |
CZ |
OH |
HH |
0.7 |
270.0 |
| HE2 |
CE2 |
CD2 |
HD2 |
359.8 |
359.8 |
| CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.2 |
| HE2 |
CE2 |
CZ |
OH |
359.9 |
359.9 |
| OH |
CZ |
CE1 |
HE1 |
360.0 |
360.0 |
| CE1 |
CZ |
OH |
CE2 |
179.4 |
180.0 |
| OH |
CZ |
CE2 |
HE2 |
359.9 |
359.9 |