PDB Chemical Component TY2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TY2
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.462 |
1.462 |
| CA |
C |
1.536 |
1.536 |
| CA |
CB |
1.540 |
1.540 |
| C |
O |
1.226 |
1.226 |
| C |
OXT |
1.326 |
1.326 |
| CB |
CG |
1.500 |
1.500 |
| CG |
CD1 |
1.400 |
1.400 |
| CG |
CD2 |
1.407 |
1.407 |
| CD1 |
CE1 |
1.405 |
1.405 |
| CD2 |
CE2 |
1.386 |
1.386 |
| CE1 |
CZ |
1.396 |
1.396 |
| CE2 |
CZ |
1.380 |
1.380 |
| CE2 |
NE2 |
1.343 |
1.343 |
| CZ |
OH |
1.388 |
1.388 |
| N |
H |
1.000 |
1.000 |
| N |
H2 |
1.000 |
1.000 |
| CA |
HA |
1.100 |
1.100 |
| CB |
HA1 |
1.100 |
1.100 |
| CB |
HB2 |
1.100 |
1.100 |
| OXT |
HXT |
0.950 |
0.950 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CD2 |
HC |
1.080 |
1.080 |
| CE1 |
HD |
1.080 |
1.080 |
| NE2 |
HE21 |
1.000 |
1.000 |
| NE2 |
HE22 |
0.999 |
1.000 |
| OH |
HH |
0.950 |
0.950 |
Bond Angles for TY2
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
C |
112.2 |
112.2 |
| N |
CA |
CB |
112.1 |
112.1 |
| CA |
N |
H |
109.5 |
109.5 |
| CA |
N |
H2 |
109.5 |
109.5 |
| N |
CA |
HA |
106.2 |
106.2 |
| C |
CA |
CB |
110.9 |
110.9 |
| CA |
C |
O |
121.1 |
121.1 |
| CA |
C |
OXT |
115.3 |
115.3 |
| C |
CA |
HA |
107.5 |
107.5 |
| CA |
CB |
CG |
107.5 |
107.5 |
| CB |
CA |
HA |
107.6 |
107.6 |
| CA |
CB |
HA1 |
110.1 |
110.1 |
| CA |
CB |
HB2 |
110.5 |
110.5 |
| O |
C |
OXT |
123.6 |
123.6 |
| C |
OXT |
HXT |
109.5 |
109.5 |
| CB |
CG |
CD1 |
120.0 |
120.0 |
| CB |
CG |
CD2 |
120.9 |
120.9 |
| CG |
CB |
HA1 |
110.1 |
110.1 |
| CG |
CB |
HB2 |
110.6 |
110.6 |
| CD1 |
CG |
CD2 |
118.9 |
118.9 |
| CG |
CD1 |
CE1 |
119.9 |
119.9 |
| CG |
CD1 |
HD1 |
120.0 |
120.0 |
| CG |
CD2 |
CE2 |
121.2 |
121.2 |
| CG |
CD2 |
HC |
119.4 |
119.4 |
| CD1 |
CE1 |
CZ |
119.4 |
119.4 |
| CE1 |
CD1 |
HD1 |
120.1 |
120.1 |
| CD1 |
CE1 |
HD |
120.3 |
120.3 |
| CD2 |
CE2 |
CZ |
119.3 |
119.3 |
| CD2 |
CE2 |
NE2 |
126.1 |
126.1 |
| CE2 |
CD2 |
HC |
119.4 |
119.4 |
| CE1 |
CZ |
CE2 |
121.2 |
121.2 |
| CE1 |
CZ |
OH |
123.8 |
123.8 |
| CZ |
CE1 |
HD |
120.3 |
120.3 |
| CZ |
CE2 |
NE2 |
114.5 |
114.5 |
| CE2 |
CZ |
OH |
115.0 |
115.0 |
| CE2 |
NE2 |
HE21 |
109.5 |
109.5 |
| CE2 |
NE2 |
HE22 |
109.5 |
109.5 |
| CZ |
OH |
HH |
109.5 |
109.5 |
| H |
N |
H2 |
109.5 |
109.5 |
| HA1 |
CB |
HB2 |
108.0 |
108.0 |
| HE21 |
NE2 |
HE22 |
109.5 |
109.5 |
Torsion Angles for TY2
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
CA |
N |
CB |
125.6 |
125.6 |
| N |
CA |
C |
O |
251.0 |
251.0 |
| N |
CA |
C |
OXT |
70.7 |
70.7 |
| C |
CA |
N |
HA |
242.8 |
242.8 |
| N |
CA |
CB |
CG |
202.9 |
202.9 |
| CB |
CA |
N |
HA |
117.2 |
117.2 |
| N |
CA |
CB |
HA1 |
322.9 |
322.9 |
| N |
CA |
CB |
HB2 |
82.1 |
82.1 |
| H |
N |
CA |
H2 |
240.0 |
240.0 |
| N |
CA |
C |
CB |
233.7 |
233.7 |
| C |
CA |
N |
H |
54.5 |
54.5 |
| C |
CA |
N |
H2 |
174.5 |
174.5 |
| N |
CA |
C |
HA |
116.4 |
116.4 |
| C |
CA |
CB |
CG |
76.6 |
76.6 |
| CB |
CA |
C |
HA |
242.6 |
242.6 |
| C |
CA |
CB |
HA1 |
196.6 |
196.6 |
| C |
CA |
CB |
HB2 |
315.8 |
315.8 |
| O |
C |
CA |
OXT |
180.3 |
180.3 |
| CA |
C |
OXT |
HXT |
180.3 |
180.3 |
| N |
CA |
CB |
C |
126.3 |
126.3 |
| CB |
CA |
N |
H |
288.9 |
288.9 |
| CB |
CA |
N |
H2 |
48.9 |
48.9 |
| N |
CA |
CB |
HA |
243.6 |
243.6 |
| CB |
CA |
C |
O |
17.3 |
17.3 |
| CB |
CA |
C |
OXT |
197.0 |
197.0 |
| C |
CA |
CB |
HA |
117.3 |
117.3 |
| CA |
CB |
CG |
CD1 |
73.8 |
73.8 |
| CA |
CB |
CG |
CD2 |
259.1 |
259.1 |
| CG |
CB |
CA |
HA1 |
240.0 |
240.0 |
| CG |
CB |
CA |
HB2 |
120.8 |
120.8 |
| HA1 |
CB |
CA |
HB2 |
240.8 |
240.8 |
| O |
C |
CA |
CB |
17.3 |
17.3 |
| CA |
C |
O |
OXT |
179.7 |
179.7 |
| O |
C |
CA |
HA |
134.6 |
134.6 |
| O |
C |
OXT |
HXT |
0.0 |
0.0 |
| OXT |
C |
CA |
CB |
197.0 |
197.0 |
| CA |
C |
OXT |
O |
180.3 |
180.3 |
| OXT |
C |
CA |
HA |
314.3 |
314.3 |
| CG |
CB |
CA |
HA |
319.3 |
319.3 |
| CA |
CB |
CG |
HA1 |
120.0 |
120.0 |
| CA |
CB |
CG |
HB2 |
239.2 |
239.2 |
| CD1 |
CG |
CB |
CD2 |
174.7 |
174.7 |
| CB |
CG |
CD1 |
CE1 |
183.4 |
183.4 |
| CB |
CG |
CD1 |
HD1 |
3.4 |
3.4 |
| CB |
CG |
CD2 |
CE2 |
175.7 |
175.7 |
| CB |
CG |
CD2 |
HC |
355.7 |
355.7 |
| HA1 |
CB |
CG |
HB2 |
119.3 |
119.3 |
| CB |
CG |
CD1 |
CD2 |
185.2 |
185.2 |
| CD1 |
CG |
CB |
HA1 |
313.8 |
313.8 |
| CD1 |
CG |
CB |
HB2 |
194.6 |
194.6 |
| CD1 |
CG |
CD2 |
CE2 |
1.0 |
1.0 |
| CD1 |
CG |
CD2 |
HC |
180.9 |
180.9 |
| CG |
CD1 |
CE1 |
CZ |
0.7 |
0.7 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CG |
CD1 |
CE1 |
HD |
180.7 |
180.7 |
| CB |
CG |
CD2 |
CD1 |
174.8 |
174.8 |
| CD2 |
CG |
CB |
HA1 |
139.1 |
139.1 |
| CD2 |
CG |
CB |
HB2 |
19.9 |
19.9 |
| CD2 |
CG |
CD1 |
CE1 |
358.2 |
358.2 |
| CD2 |
CG |
CD1 |
HD1 |
178.2 |
178.2 |
| CG |
CD2 |
CE2 |
CZ |
1.0 |
1.0 |
| CG |
CD2 |
CE2 |
NE2 |
178.8 |
178.8 |
| CE2 |
CD2 |
CG |
HC |
180.0 |
180.0 |
| CE1 |
CD1 |
CG |
CD2 |
358.2 |
358.2 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
1.4 |
1.4 |
| CD1 |
CE1 |
CZ |
OH |
178.1 |
178.1 |
| CZ |
CE1 |
CD1 |
HD |
180.0 |
180.0 |
| CG |
CD2 |
CE2 |
HC |
180.0 |
180.0 |
| CE1 |
CZ |
CE2 |
CD2 |
357.8 |
357.8 |
| CZ |
CE2 |
CD2 |
NE2 |
182.2 |
182.2 |
| CD2 |
CE2 |
CZ |
OH |
180.8 |
180.8 |
| CD2 |
CE2 |
NE2 |
HE21 |
160.6 |
160.6 |
| CD2 |
CE2 |
NE2 |
HE22 |
280.6 |
280.6 |
| CZ |
CE1 |
CD1 |
HD1 |
180.7 |
180.7 |
| CD1 |
CE1 |
CZ |
HD |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
357.8 |
357.8 |
| CE1 |
CZ |
CE2 |
NE2 |
179.7 |
179.7 |
| CE2 |
CZ |
CE1 |
OH |
183.3 |
183.3 |
| CE1 |
CZ |
OH |
HH |
356.6 |
356.6 |
| CD2 |
CE2 |
CZ |
NE2 |
178.0 |
178.0 |
| CZ |
CE2 |
CD2 |
HC |
181.1 |
181.1 |
| CE1 |
CZ |
CE2 |
OH |
177.0 |
177.0 |
| CE2 |
CZ |
CE1 |
HD |
181.4 |
181.4 |
| CZ |
CE2 |
NE2 |
HE21 |
338.5 |
338.5 |
| CZ |
CE2 |
NE2 |
HE22 |
98.5 |
98.5 |
| CE2 |
CZ |
OH |
HH |
173.5 |
173.5 |
| CD2 |
CE2 |
NE2 |
CZ |
182.1 |
182.1 |
| NE2 |
CE2 |
CD2 |
HC |
358.9 |
358.9 |
| NE2 |
CE2 |
CZ |
OH |
2.8 |
2.8 |
| HE21 |
NE2 |
CE2 |
HE22 |
240.0 |
240.0 |
| CE1 |
CZ |
OH |
CE2 |
183.1 |
183.1 |
| OH |
CZ |
CE1 |
HD |
358.0 |
358.0 |
| OH |
CZ |
CE2 |
NE2 |
2.8 |
2.8 |
| H |
N |
CA |
C |
54.5 |
54.5 |
| H |
N |
CA |
CB |
288.9 |
288.9 |
| CA |
N |
H |
H2 |
120.0 |
120.0 |
| H |
N |
CA |
HA |
171.7 |
171.7 |
| H2 |
N |
CA |
C |
174.5 |
174.5 |
| H2 |
N |
CA |
CB |
48.9 |
48.9 |
| CA |
N |
H2 |
H |
240.0 |
240.0 |
| H2 |
N |
CA |
HA |
291.7 |
291.7 |
| N |
CA |
HA |
C |
239.7 |
239.7 |
| N |
CA |
HA |
CB |
120.2 |
120.2 |
| HA |
CA |
N |
H |
171.7 |
171.7 |
| HA |
CA |
N |
H2 |
291.7 |
291.7 |
| C |
CA |
HA |
CB |
240.5 |
240.5 |
| HA |
CA |
C |
O |
134.6 |
134.6 |
| HA |
CA |
C |
OXT |
314.3 |
314.3 |
| HA |
CA |
CB |
CG |
319.3 |
319.3 |
| HA |
CA |
CB |
HA1 |
79.3 |
79.3 |
| HA |
CA |
CB |
HB2 |
198.5 |
198.5 |
| CA |
CB |
HA1 |
CG |
241.6 |
241.6 |
| HA1 |
CB |
CA |
HA |
79.3 |
79.3 |
| CA |
CB |
HA1 |
HB2 |
120.8 |
120.8 |
| HA1 |
CB |
CG |
CD1 |
313.8 |
313.8 |
| HA1 |
CB |
CG |
CD2 |
139.1 |
139.1 |
| CG |
CB |
HA1 |
HB2 |
239.2 |
239.2 |
| CA |
CB |
HB2 |
CG |
119.0 |
119.0 |
| HB2 |
CB |
CA |
HA |
198.5 |
198.5 |
| CA |
CB |
HB2 |
HA1 |
239.5 |
239.5 |
| HB2 |
CB |
CG |
CD1 |
194.6 |
194.6 |
| HB2 |
CB |
CG |
CD2 |
19.9 |
19.9 |
| CG |
CB |
HB2 |
HA1 |
120.6 |
120.6 |
| HD1 |
CD1 |
CG |
CD2 |
178.2 |
178.2 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
CZ |
180.7 |
180.7 |
| HD1 |
CD1 |
CE1 |
HD |
0.7 |
0.7 |
| CG |
CD2 |
HC |
CE2 |
180.0 |
180.0 |
| HC |
CD2 |
CE2 |
CZ |
181.1 |
181.1 |
| HC |
CD2 |
CE2 |
NE2 |
358.9 |
358.9 |
| CD1 |
CE1 |
HD |
CZ |
180.0 |
180.0 |
| HD |
CE1 |
CD1 |
HD1 |
0.7 |
0.7 |
| HD |
CE1 |
CZ |
CE2 |
181.4 |
181.4 |
| HD |
CE1 |
CZ |
OH |
358.0 |
358.0 |
| CE2 |
NE2 |
HE21 |
HE22 |
120.0 |
120.0 |
| CE2 |
NE2 |
HE22 |
HE21 |
240.0 |
240.0 |