PDB Chemical Component TVU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TVU

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O5	S1	1.438	1.420
S1	O4	1.436	1.420
S1	C19	1.764	1.817
S1	C20	1.765	1.816
C19	C18	1.517	1.531
C18	C17	1.516	1.525
C20	C21	1.531	1.530
C21	C17	1.522	1.530
C17	N1	1.464	1.465
N1	C16	1.341	1.348
C16	O3	1.229	1.217
C16	C14	1.479	1.467
C14	C13	1.368	1.341
C14	S	1.740	1.756
C13	C12	1.425	1.396
S	C15	1.735	1.757
C15	C12	1.379	1.398
C15	C8	1.448	1.467
C12	C11	1.439	1.475
C11	O2	1.223	1.219
C11	N	1.394	1.342
N	C10	1.462	1.465
N	C9	1.364	1.360
C9	C8	1.360	1.358
C8	C4	1.491	1.483
C4	C3	1.392	1.394
C4	C5	1.393	1.393
C3	C2	1.385	1.380
C2	C1	1.387	1.386
C5	C6	1.386	1.384
C6	O1	1.370	1.360
C6	C1	1.406	1.393
O1	C7	1.425	1.428
C1	O	1.370	1.360
O	C	1.427	1.429
C19	H191	1.100	1.090
C19	H192	1.100	1.091
C20	H201	1.100	1.090
C20	H202	1.100	1.090
C18	H181	1.100	1.090
C18	H182	1.100	1.090
C17	H17	1.100	1.090
C21	H211	1.100	1.090
C21	H212	1.100	1.090
N1	H1	1.000	0.970
C13	H13	1.080	1.080
C10	H101	1.100	1.090
C10	H102	1.100	1.089
C10	H103	1.100	1.090
C9	H9	1.080	1.079
C3	H3	1.080	1.080
C5	H5	1.080	1.079
C2	H2	1.080	1.080
C7	H71C	1.100	1.090
C7	H72C	1.100	1.090
C7	H73C	1.100	1.090
C	HC1	1.100	1.090
C	HC2	1.100	1.090
C	HC3	1.100	1.090

Bond Angles for TVU

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O5	S1	O4	118.2	119.3
O5	S1	C19	109.0	108.6
O5	S1	C20	109.1	108.7
O4	S1	C19	109.2	108.7
O4	S1	C20	109.3	108.7
C19	S1	C20	100.6	101.4
S1	C19	C18	108.1	109.0
S1	C19	H191	109.8	109.6
S1	C19	H192	109.8	109.6
S1	C20	C21	110.9	109.0
S1	C20	H201	109.1	109.5
S1	C20	H202	109.1	109.6
C19	C18	C17	112.5	110.0
C18	C19	H191	109.8	109.5
C18	C19	H192	109.8	109.5
C19	C18	H181	108.7	109.4
C19	C18	H182	108.7	109.4
C18	C17	C21	111.0	110.7
C18	C17	N1	110.1	109.2
C17	C18	H181	108.7	109.4
C17	C18	H182	108.7	109.4
C18	C17	H17	107.8	109.3
C20	C21	C17	116.3	109.9
C21	C20	H201	109.1	109.6
C21	C20	H202	109.1	109.6
C20	C21	H211	107.8	109.4
C20	C21	H212	107.7	109.4
C21	C17	N1	111.7	109.2
C21	C17	H17	107.7	109.3
C17	C21	H211	107.7	109.5
C17	C21	H212	107.8	109.3
C17	N1	C16	122.3	120.0
N1	C17	H17	108.4	109.2
C17	N1	H1	118.9	120.0
N1	C16	O3	122.9	120.0
N1	C16	C14	117.1	120.0
C16	N1	H1	118.9	120.0
O3	C16	C14	119.9	120.0
C16	C14	C13	132.4	124.7
C16	C14	S	116.3	124.8
C13	C14	S	111.2	110.5
C14	C13	C12	113.2	115.6
C14	C13	H13	123.4	122.2
C14	S	C15	91.7	91.5
C13	C12	C15	112.5	112.7
C13	C12	C11	124.5	129.8
C12	C13	H13	123.4	122.2
S	C15	C12	111.3	109.7
S	C15	C8	129.5	131.5
C12	C15	C8	119.2	118.8
C15	C12	C11	123.0	117.5
C15	C8	C9	116.4	119.7
C15	C8	C4	123.1	120.2
C12	C11	O2	125.1	119.9
C12	C11	N	115.1	120.2
O2	C11	N	119.9	119.9
C11	N	C10	117.3	118.9
C11	N	C9	121.8	122.3
C10	N	C9	120.9	118.8
N	C10	H101	109.5	109.4
N	C10	H102	109.5	109.5
N	C10	H103	109.5	109.5
N	C9	C8	124.5	121.4
N	C9	H9	117.8	119.3
C9	C8	C4	120.5	120.1
C8	C9	H9	117.8	119.2
C8	C4	C3	120.8	120.0
C8	C4	C5	120.1	120.1
C3	C4	C5	119.1	119.9
C4	C3	C2	121.2	120.0
C4	C3	H3	119.4	120.0
C4	C5	C6	120.3	119.9
C4	C5	H5	119.8	120.1
C3	C2	C1	119.7	120.1
C2	C3	H3	119.4	120.0
C3	C2	H2	120.1	119.9
C2	C1	C6	119.7	120.1
C2	C1	O	124.8	120.0
C1	C2	H2	120.2	120.0
C5	C6	O1	124.5	120.0
C5	C6	C1	120.0	120.0
C6	C5	H5	119.8	120.0
O1	C6	C1	115.5	120.1
C6	O1	C7	117.7	117.0
C6	C1	O	115.5	119.9
O1	C7	H71C	109.5	109.5
O1	C7	H72C	109.5	109.5
O1	C7	H73C	109.5	109.5
C1	O	C	117.6	117.0
O	C	HC1	109.5	109.5
O	C	HC2	109.5	109.5
O	C	HC3	109.4	109.4
H191	C19	H192	109.4	109.6
H201	C20	H202	109.5	109.6
H181	C18	H182	109.5	109.3
H211	C21	H212	109.5	109.3
H101	C10	H102	109.5	109.5
H101	C10	H103	109.5	109.5
H102	C10	H103	109.5	109.5
H71C	C7	H72C	109.5	109.5
H71C	C7	H73C	109.4	109.5
H72C	C7	H73C	109.5	109.4
HC1	C	HC2	109.4	109.5
HC1	C	HC3	109.5	109.5
HC2	C	HC3	109.5	109.4

Torsion Angles for TVU

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O4	S1	O5	C19	234.6	234.8
O4	S1	O5	C20	125.6	125.2
C19	S1	O5	C20	251.0	250.5
O5	S1	C19	C18	54.5	168.6
O5	S1	C19	H191	174.3	288.5
O5	S1	C19	H192	294.7	48.8
O5	S1	C20	C21	298.9	191.4
O5	S1	C20	H201	59.1	311.3
O5	S1	C20	H202	178.7	71.5
O5	S1	O4	C19	125.3	125.2
O5	S1	O4	C20	234.5	234.7
C19	S1	O4	C20	109.2	109.5
O4	S1	C19	C18	185.0	299.8
O4	S1	C19	H191	304.8	59.7
O4	S1	C19	H192	65.2	180.1
O4	S1	C20	C21	168.4	60.1
O4	S1	C20	H201	288.6	180.0
O4	S1	C20	H202	48.2	300.2
O5	S1	C19	O4	229.5	228.8
O5	S1	C19	C20	114.6	114.4
O4	S1	C19	C20	245.1	245.6
C19	S1	C20	C21	53.5	305.7
C19	S1	C20	H201	173.7	65.6
C19	S1	C20	H202	293.3	185.9
S1	C19	C18	C17	67.7	296.4
C18	C19	S1	H191	240.2	240.1
C18	C19	S1	H192	119.8	119.8
S1	C19	C18	H181	188.2	56.5
S1	C19	C18	H182	307.3	176.2
H191	C19	S1	H192	239.6	239.7
O5	S1	C20	O4	130.6	131.3
O5	S1	C20	C19	245.4	245.6
O4	S1	C20	C19	114.8	114.4
C20	S1	C19	C18	299.9	54.2
C20	S1	C19	H191	59.7	174.1
C20	S1	C19	H192	180.1	294.4
S1	C20	C21	C17	305.6	63.5
C21	C20	S1	H201	239.8	240.1
C21	C20	S1	H202	120.2	119.9
S1	C20	C21	H211	66.6	183.8
S1	C20	C21	H212	184.6	303.5
H201	C20	S1	H202	240.4	239.8
C18	C19	S1	C20	299.9	54.2
S1	C19	C18	H191	119.8	119.9
S1	C19	C18	H192	240.2	240.2
C19	C18	C17	C21	298.7	70.0
C19	C18	C17	N1	62.9	190.3
C17	C18	C19	H181	239.5	239.9
C17	C18	C19	H182	120.4	120.2
C19	C18	C17	H17	180.9	309.7
H191	C19	C18	H192	120.4	120.3
H181	C18	C19	H182	240.9	240.3
C17	C18	C19	H191	307.9	176.5
C17	C18	C19	H192	187.5	56.2
C19	C18	C17	H181	120.4	120.1
C19	C18	C17	H182	239.6	239.8
C20	C21	C17	C18	54.5	290.0
C21	C17	C18	N1	235.8	239.8
C21	C17	C18	H17	117.7	120.3
C18	C17	C21	H211	293.5	169.8
C18	C17	C21	H212	175.5	50.1
C18	C17	N1	C16	77.0	155.0
N1	C17	C18	H17	241.9	240.6
C18	C17	N1	H1	257.0	334.9
H181	C18	C17	H182	119.1	119.7
S1	C20	C21	H201	120.2	119.9
S1	C20	C21	H202	239.8	240.1
C18	C17	C21	C20	54.5	290.0
C20	C21	C17	N1	291.2	169.8
C20	C21	C17	H17	172.3	50.4
C17	C21	C20	H211	239.0	239.7
C17	C21	C20	H212	121.0	120.0
H201	C20	C21	H202	119.6	120.2
H211	C21	C20	H212	242.0	240.3
C18	C17	C21	N1	123.3	120.3
C21	C17	C18	H181	178.2	309.9
C21	C17	C18	H182	59.1	190.2
C18	C17	C21	H17	242.2	239.6
C17	C21	C20	H201	185.4	303.7
C17	C21	C20	H202	65.8	183.4
C20	C21	C17	H211	121.0	120.2
C20	C21	C17	H212	239.0	239.9
C21	C17	N1	C16	200.8	276.2
N1	C17	C21	H17	118.9	119.4
C21	C17	N1	H1	20.8	96.1
H211	C21	C17	H212	118.0	119.7
C18	C17	N1	C21	236.2	238.9
N1	C17	C18	H181	302.4	70.2
N1	C17	C18	H182	183.3	310.5
C18	C17	N1	H17	117.7	119.4
C21	C17	N1	H17	241.5	240.6
N1	C17	C21	H211	170.2	49.6
N1	C17	C21	H212	52.2	289.8
C17	N1	C16	O3	2.8	359.9
C17	N1	C16	C14	179.9	180.0
C16	N1	C17	H1	180.0	180.1
C16	N1	C17	H17	319.3	35.6
C17	N1	C16	H1	180.0	179.9
O3	C16	N1	C14	182.9	179.9
N1	C16	C14	C13	356.9	179.9
N1	C16	C14	S	179.2	359.6
N1	C16	O3	C14	177.0	180.1
O3	C16	N1	H1	182.8	180.0
O3	C16	C14	C13	174.0	0.0
O3	C16	C14	S	356.3	179.7
N1	C16	C14	O3	182.8	179.9
C14	C16	N1	H1	359.9	0.1
C13	C14	C16	S	177.7	180.3
C16	C14	C13	C12	181.9	180.0
C16	C14	C13	H13	2.0	360.0
C16	C14	S	C15	178.3	180.0
C16	C14	C13	S	182.2	179.7
C13	C14	S	C15	0.1	359.7
C14	C13	C12	C15	0.3	359.9
C14	C13	C12	C11	180.8	180.0
C12	C13	C14	H13	180.0	180.0
C16	C14	S	C13	178.2	180.3
S	C14	C13	C12	359.7	0.3
S	C14	C13	H13	179.7	180.3
C14	S	C15	C12	0.1	0.2
C14	S	C15	C8	180.0	180.0
C12	C13	C14	S	359.7	0.3
C14	C13	C12	H13	180.0	180.0
S	C15	C12	C13	359.8	359.9
C13	C12	C15	C8	179.8	180.1
C15	C12	C13	C11	179.5	179.9
C13	C12	C11	O2	2.0	0.0
C13	C12	C11	N	180.0	180.0
C13	C12	C15	S	359.8	359.9
C12	C15	S	C8	180.0	180.2
S	C15	C12	C11	179.3	179.8
S	C15	C8	C9	180.6	180.0
S	C15	C8	C4	2.3	0.1
C13	C12	C15	C11	180.5	180.1
C15	C12	C13	H13	180.3	179.9
S	C15	C12	C8	180.0	179.8
C12	C15	C8	C9	0.5	359.8
C12	C15	C8	C4	182.3	179.8
C15	C12	C11	O2	182.5	180.1
C15	C12	C11	N	0.6	0.1
S	C15	C8	C12	180.1	180.3
C8	C15	C12	C11	359.3	0.0
N	C9	C8	C15	359.7	0.4
C9	C8	C15	C4	178.2	180.0
C15	C8	C9	H9	179.7	180.1
C15	C8	C4	C3	136.6	295.0
C15	C8	C4	C5	317.8	114.7
C13	C12	C11	C15	179.4	179.9
C11	C12	C13	H13	0.8	360.0
C11	C12	C15	C8	359.3	0.0
O2	C11	C12	N	181.9	180.0
C12	C11	N	C10	180.1	180.0
C12	C11	N	C9	359.7	0.1
C12	C11	O2	N	178.0	180.0
O2	C11	N	C10	358.3	0.0
O2	C11	N	C9	177.9	180.1
C12	C11	N	O2	181.8	180.0
C10	N	C11	C9	180.4	180.0
C11	N	C10	H101	180.0	0.0
C11	N	C10	H102	300.0	120.0
C11	N	C10	H103	60.0	240.0
C11	N	C9	C8	0.2	359.7
C11	N	C9	H9	180.2	180.0
C11	N	C10	C9	179.6	180.0
C10	N	C9	C8	179.8	179.7
C10	N	C9	H9	359.8	0.1
H101	C10	N	H102	240.0	240.0
H101	C10	N	H103	120.0	120.0
H102	C10	N	H103	240.0	240.0
C15	C8	C9	N	359.7	0.4
C11	N	C9	C10	180.4	180.0
C9	N	C10	H101	0.4	180.0
C9	N	C10	H102	120.4	300.0
C9	N	C10	H103	240.4	60.0
N	C9	C8	C4	178.0	180.3
C8	C9	N	H9	180.0	179.7
C15	C8	C9	C4	181.7	180.0
N	C9	C8	H9	180.0	180.3
C9	C8	C4	C3	318.5	115.0
C9	C8	C4	C5	139.6	294.8
C15	C8	C4	C9	178.1	180.0
C4	C8	C9	H9	358.0	0.0
C3	C4	C8	C5	178.8	180.3
C8	C4	C3	C2	181.2	180.0
C8	C4	C3	H3	1.2	0.0
C8	C4	C5	C6	177.6	180.0
C8	C4	C5	H5	357.6	0.0
C8	C4	C3	C5	181.1	179.7
C3	C4	C5	C6	358.7	359.8
C3	C4	C5	H5	178.7	179.8
C4	C3	C2	C1	0.4	360.0
C2	C3	C4	H3	180.0	180.0
C4	C3	C2	H2	180.5	180.0
C8	C4	C5	C3	178.9	180.3
C5	C4	C3	C2	0.0	0.3
C5	C4	C3	H3	180.1	180.3
C4	C5	C6	O1	183.3	180.0
C4	C5	C6	C1	2.0	359.9
C6	C5	C4	H5	180.0	180.0
C2	C3	C4	C5	0.0	0.3
C4	C3	C2	H3	180.0	180.0
C3	C2	C1	C6	0.3	359.7
C3	C2	C1	O	180.7	180.0
C1	C2	C3	H2	180.0	180.0
C1	C2	C3	H3	180.4	180.0
C3	C2	C1	H2	180.0	180.0
C5	C6	C1	C2	358.5	0.4
O1	C6	C1	C2	177.3	180.2
C6	C1	C2	O	179.5	179.7
C2	C1	O	C	27.0	0.0
C4	C5	C6	H5	180.0	180.0
C2	C1	C6	C5	358.5	0.4
O1	C6	C5	C1	181.3	180.1
C5	C6	O1	C7	17.9	359.9
C5	C6	C1	O	178.1	180.1
C2	C1	C6	O1	177.3	180.2
C5	C6	O1	C1	178.8	179.9
O1	C6	C5	H5	3.3	0.0
O1	C6	C1	O	356.9	359.9
C6	O1	C7	H71C	180.0	300.0
C6	O1	C7	H72C	300.0	60.1
C6	O1	C7	H73C	60.0	180.0
C2	C1	C6	O	180.4	180.3
C6	C1	C2	H2	180.3	179.7
C5	C6	C1	O1	181.2	180.1
C1	C6	C5	H5	182.0	179.9
C1	C6	O1	C7	199.2	180.0
C6	C1	O	C	207.5	180.3
C7	O1	C6	C1	199.2	180.0
H71C	C7	O1	H72C	240.0	239.9
H71C	C7	O1	H73C	120.0	120.0
H72C	C7	O1	H73C	240.0	240.1
C2	C1	O	C6	179.6	179.7
O	C1	C2	H2	0.7	360.0
C1	O	C	HC1	180.0	60.0
C1	O	C	HC2	300.0	180.0
C1	O	C	HC3	60.0	300.0
HC1	C	O	HC2	240.0	240.0
HC1	C	O	HC3	120.0	120.0
HC2	C	O	HC3	240.0	240.1
H191	C19	S1	C20	59.7	174.1
S1	C19	H191	C18	241.2	240.5
S1	C19	H191	H192	120.6	120.3
H191	C19	C18	C17	307.9	176.5
C18	C19	H191	H192	239.4	239.8
H191	C19	C18	H181	68.3	296.6
H191	C19	C18	H182	187.5	56.3
H192	C19	S1	C20	180.1	294.4
S1	C19	H192	C18	118.8	119.5
S1	C19	H192	H191	239.4	239.7
H192	C19	C18	C17	187.5	56.2
C18	C19	H192	H191	120.6	120.2
H192	C19	C18	H181	308.0	176.3
H192	C19	C18	H182	67.1	296.0
S1	C20	H201	C21	238.7	240.4
S1	C20	H201	H202	119.4	120.2
H201	C20	C21	C17	185.4	303.7
C21	C20	H201	H202	240.6	239.8
H201	C20	C21	H211	306.4	63.9
H201	C20	C21	H212	64.4	183.6
S1	C20	H202	C21	121.3	119.6
S1	C20	H202	H201	240.6	239.8
H202	C20	C21	C17	65.8	183.4
C21	C20	H202	H201	119.4	120.2
H202	C20	C21	H211	186.8	303.7
H202	C20	C21	H212	304.7	63.4
C19	C18	H181	C17	237.2	239.5
H181	C18	C19	H191	68.3	296.6
H181	C18	C19	H192	308.0	176.3
C19	C18	H181	H182	118.6	119.8
H181	C18	C17	C21	178.2	309.9
H181	C18	C17	N1	302.4	70.2
C17	C18	H181	H182	241.4	240.2
H181	C18	C17	H17	60.5	189.6
C19	C18	H182	C17	122.8	120.5
H182	C18	C19	H191	187.5	56.3
H182	C18	C19	H192	67.1	296.0
C19	C18	H182	H181	241.4	240.3
H182	C18	C17	C21	59.1	190.2
H182	C18	C17	N1	183.3	310.5
C17	C18	H182	H181	118.6	119.7
H182	C18	C17	H17	301.4	69.9
C18	C17	H17	C21	119.8	121.2
C18	C17	H17	N1	240.8	240.6
H17	C17	C18	H181	60.5	189.6
H17	C17	C18	H182	301.4	69.9
C21	C17	H17	N1	121.0	119.4
H17	C17	C21	H211	51.3	290.2
H17	C17	C21	H212	293.3	170.5
H17	C17	N1	C16	319.3	35.6
H17	C17	N1	H1	139.3	215.5
C20	C21	H211	C17	233.8	239.5
H211	C21	C20	H201	306.4	63.9
H211	C21	C20	H202	186.8	303.7
C20	C21	H211	H212	116.9	119.8
H211	C21	C17	N1	170.2	49.6
H211	C21	C17	H17	51.3	290.2
C17	C21	H211	H212	243.1	240.3
C20	C21	H212	C17	126.2	120.4
H212	C21	C20	H201	64.4	183.6
H212	C21	C20	H202	304.7	63.4
C20	C21	H212	H211	243.1	240.2
H212	C21	C17	N1	52.2	289.8
H212	C21	C17	H17	293.3	170.5
C17	C21	H212	H211	116.9	119.8
C17	N1	H1	C16	180.0	180.1
H1	N1	C17	H17	139.3	215.5
H1	N1	C16	O3	182.8	180.0
H1	N1	C16	C14	359.9	0.1
H13	C13	C14	S	179.7	180.3
C14	C13	H13	C12	180.0	180.0
H13	C13	C12	C15	180.3	179.9
H13	C13	C12	C11	0.8	360.0
H101	C10	N	C9	0.4	180.0
N	C10	H101	H102	120.0	120.0
N	C10	H101	H103	240.0	240.0
H102	C10	H101	H103	120.0	120.0
H102	C10	N	C9	120.4	300.0
N	C10	H102	H101	240.0	240.0
N	C10	H102	H103	120.0	120.0
H101	C10	H102	H103	240.0	240.0
H103	C10	N	C9	240.4	60.0
N	C10	H103	H101	120.0	120.0
N	C10	H103	H102	240.0	240.0
H101	C10	H103	H102	120.0	120.0
N	C9	H9	C8	180.0	179.7
H9	C9	C8	C4	358.0	0.0
H3	C3	C4	C5	180.1	180.3
C4	C3	H3	C2	180.0	180.0
H3	C3	C2	C1	180.4	180.0
H3	C3	C2	H2	0.4	0.0
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	O1	3.3	0.0
H5	C5	C6	C1	182.0	179.9
C3	C2	H2	C1	180.0	180.0
H2	C2	C3	H3	0.4	0.0
H2	C2	C1	C6	180.3	179.7
H2	C2	C1	O	0.7	360.0
O1	C7	H71C	H72C	120.0	120.0
O1	C7	H71C	H73C	240.0	240.0
H72C	C7	H71C	H73C	120.0	120.0
O1	C7	H72C	H71C	240.0	239.9
O1	C7	H72C	H73C	120.0	120.0
H71C	C7	H72C	H73C	240.0	240.0
O1	C7	H73C	H71C	120.0	120.0
O1	C7	H73C	H72C	240.0	240.1
H71C	C7	H73C	H72C	120.0	120.0
O	C	HC1	HC2	120.0	120.0
O	C	HC1	HC3	240.0	240.0
HC2	C	HC1	HC3	120.0	120.0
O	C	HC2	HC1	240.0	240.0
O	C	HC2	HC3	120.0	120.0
HC1	C	HC2	HC3	240.0	240.0
O	C	HC3	HC1	120.0	120.0
O	C	HC3	HC2	240.0	240.0
HC1	C	HC3	HC2	120.0	120.0