Atom Nomenclature for TUE

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for TUE

Atom Name (V3) Atom Name (V2)
N01 N01
C02 C02
N02 N02
C03 C03
C04 C04
C05 C05
C06 C06
C07 C07
C08 C08
C09 C09
C10 C10
C11 C11
O12 O12
N21 N21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
N28 N28
C29 C29
HN02 HN02
HN0A HN0A
H03 H03
H04 H04
H06 H06
H07 H07
H09 H09
H11 H11
H11A H11A
H22 H22
H24 H24
H26 H26
H27 H27
H27A H27A
H29 H29
H29A H29A