PDB Chemical Component TTX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TTX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C7 N1 1.385  
C7 H71 1.115  
C7 H72 1.115  
C7 H73 1.115  
N1 C15 1.339  
N1 C6 1.449  
C15 C16 1.355  
C15 C14 1.331  
C16 C17 1.495  
C16 H161 1.102  
C17 C22 1.357  
C17 C18 1.369  
C22 C21 1.373  
C22 H221 1.103  
C21 C20 1.343  
C21 H211 1.103  
C20 C19 1.352  
C20 H201 1.103  
C19 C18 1.354  
C19 H191 1.103  
C18 H181 1.103  
C6 O1 1.429  
C6 C5 1.636  
C5 C4 1.524  
C5 N2 1.498  
C5 H51 1.115  
C4 C2 1.488  
C4 H41 1.114  
C4 H42 1.115  
C2 C1 1.493  
C2 C3 1.521  
C2 H21 1.115  
C1 H11 1.115  
C1 H12 1.115  
C1 H13 1.115  
C3 H31 1.116  
C3 H32 1.115  
C3 H33 1.115  
N2 C8 1.343  
N2 HN21 1.020  
C8 O2 1.213  
C8 C9 1.496  
C9 C10 1.501  
C9 N3 1.417  
C9 H91 1.116  
C10 H101 1.115  
C10 H102 1.115  
C10 H103 1.115  
N3 C11 1.433  
N3 C12 1.286  
C11 H111 1.115  
C11 H112 1.115  
C11 H113 1.115  
C12 O3 1.220  
C12 C13 1.509  
C13 N4 1.467  
C13 H131 1.115  
C13 H132 1.115  
N4 C14 1.326  
N4 HN41 1.020  
C14 O4 1.201  

Bond Angles for TTX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1 C7 H71 108.4  
N1 C7 H72 120.0  
N1 C7 H73 108.4  
C7 N1 C15 120.0  
C7 N1 C6 95.5  
H71 C7 H72 108.5  
H71 C7 H73 101.5  
H72 C7 H73 108.4  
C15 N1 C6 141.3  
N1 C15 C16 119.1  
N1 C15 C14 121.1  
N1 C6 O1 123.4  
N1 C6 C5 91.9  
C16 C15 C14 119.4  
C15 C16 C17 132.2  
C15 C16 H161 107.6  
C15 C14 N4 121.7  
C15 C14 O4 118.5  
C17 C16 H161 120.2  
C16 C17 C22 114.6  
C16 C17 C18 130.8  
C22 C17 C18 114.6  
C17 C22 C21 123.2  
C17 C22 H221 117.7  
C17 C18 C19 122.7  
C17 C18 H181 119.2  
C21 C22 H221 119.0  
C22 C21 C20 120.4  
C22 C21 H211 120.9  
C20 C21 H211 118.7  
C21 C20 C19 117.8  
C21 C20 H201 120.8  
C19 C20 H201 121.4  
C20 C19 C18 121.3  
C20 C19 H191 119.3  
C18 C19 H191 119.5  
C19 C18 H181 118.1  
O1 C6 C5 116.2  
C6 C5 C4 121.7  
C6 C5 N2 101.7  
C6 C5 H51 107.3  
C4 C5 N2 110.6  
C4 C5 H51 97.6  
C5 C4 C2 121.0  
C5 C4 H41 108.1  
C5 C4 H42 108.1  
N2 C5 H51 119.1  
C5 N2 C8 124.2  
C5 N2 HN21 123.8  
C2 C4 H41 108.1  
C2 C4 H42 108.0  
C4 C2 C1 110.9  
C4 C2 C3 108.6  
C4 C2 H21 108.7  
H41 C4 H42 101.8  
C1 C2 C3 108.0  
C1 C2 H21 109.2  
C2 C1 H11 111.7  
C2 C1 H12 110.9  
C2 C1 H13 111.7  
C3 C2 H21 111.6  
C2 C3 H31 112.5  
C2 C3 H32 108.6  
C2 C3 H33 112.6  
H11 C1 H12 111.7  
H11 C1 H13 98.7  
H12 C1 H13 111.7  
H31 C3 H32 112.5  
H31 C3 H33 97.9  
H32 C3 H33 112.5  
C8 N2 HN21 112.0  
N2 C8 O2 119.5  
N2 C8 C9 122.1  
O2 C8 C9 118.4  
C8 C9 C10 109.8  
C8 C9 N3 111.7  
C8 C9 H91 107.7  
C10 C9 N3 109.5  
C10 C9 H91 110.0  
C9 C10 H101 112.1  
C9 C10 H102 109.8  
C9 C10 H103 112.1  
N3 C9 H91 108.1  
C9 N3 C11 121.5  
C9 N3 C12 123.9  
H101 C10 H102 112.1  
H101 C10 H103 98.3  
H102 C10 H103 112.1  
C11 N3 C12 114.6  
N3 C11 H111 107.9  
N3 C11 H112 121.4  
N3 C11 H113 107.9  
N3 C12 O3 119.2  
N3 C12 C13 119.2  
H111 C11 H112 107.9  
H111 C11 H113 101.9  
H112 C11 H113 108.0  
O3 C12 C13 121.6  
C12 C13 N4 107.4  
C12 C13 H131 113.0  
C12 C13 H132 113.0  
N4 C13 H131 113.0  
N4 C13 H132 113.0  
C13 N4 C14 130.1  
C13 N4 HN41 121.1  
H131 C13 H132 97.5  
C14 N4 HN41 108.8  
N4 C14 O4 119.7  

Torsion Angles for TTX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H71 C7 N1 H72 234.7  
H71 C7 N1 H73 109.5  
H72 C7 N1 H73 234.7  
C15 N1 C7 C6 164.1  
C7 N1 C15 C16 4.8  
C7 N1 C15 C14 177.9  
C7 N1 C6 O1 320.0  
C7 N1 C6 C5 83.4  
N1 C7 H71 H72 131.8  
N1 C7 H71 H73 245.9  
H71 C7 N1 C15 54.7  
H71 C7 N1 C6 250.6  
H72 C7 H71 H73 114.1  
N1 C7 H72 H71 234.7  
N1 C7 H72 H73 125.3  
H72 C7 N1 C15 180.0  
H72 C7 N1 C6 15.9  
H71 C7 H72 H73 250.5  
N1 C7 H73 H71 114.1  
N1 C7 H73 H72 228.2  
H73 C7 N1 C15 305.3  
H73 C7 N1 C6 141.2  
H71 C7 H73 H72 114.1  
C15 N1 C7 H71 54.7  
C15 N1 C7 H72 180.0  
C15 N1 C7 H73 305.3  
C7 N1 C15 C6 205.9  
C15 N1 C6 O1 162.3  
C15 N1 C6 C5 285.7  
C16 C15 N1 C14 186.9  
N1 C15 C16 C17 354.3  
N1 C15 C16 H161 174.3  
N1 C15 C14 N4 6.9  
N1 C15 C14 O4 184.8  
C6 N1 C7 H71 250.6  
C6 N1 C7 H72 15.9  
C6 N1 C7 H73 141.2  
C7 N1 C6 C15 157.7  
C6 N1 C15 C16 158.9  
C6 N1 C15 C14 332.1  
O1 C6 N1 C5 236.6  
N1 C6 C5 C4 231.7  
N1 C6 C5 N2 108.2  
N1 C6 C5 H51 342.5  
C16 C15 N1 C6 158.9  
N1 C15 C16 C14 173.3  
C16 C15 C14 N4 180.0  
C16 C15 C14 O4 358.0  
C17 C16 C15 H161 180.0  
C15 C16 C17 C22 180.7  
C15 C16 C17 C18 2.8  
C14 C15 N1 C6 332.1  
N1 C15 C14 C16 186.9  
C14 C15 C16 C17 181.0  
C14 C15 C16 H161 1.0  
C13 N4 C14 C15 171.3  
C15 C14 N4 HN41 351.3  
N4 C14 C15 O4 182.0  
C17 C16 C15 C14 181.0  
C15 C16 C17 H161 180.0  
C22 C17 C16 C18 177.9  
C16 C17 C22 C21 183.0  
C16 C17 C22 H221 3.0  
C16 C17 C18 C19 176.9  
C16 C17 C18 H181 357.0  
H161 C16 C15 C14 1.0  
C15 C16 H161 C17 180.0  
H161 C16 C17 C22 0.8  
H161 C16 C17 C18 182.8  
C22 C17 C16 H161 0.8  
C16 C17 C22 C18 181.7  
C22 C17 C18 C19 359.0  
C22 C17 C18 H181 179.0  
C21 C22 C17 H221 180.0  
C17 C22 C21 C20 359.0  
C17 C22 C21 H211 179.0  
C18 C17 C16 H161 182.8  
C16 C17 C18 C22 177.9  
C18 C17 C22 C21 1.3  
C18 C17 C22 H221 181.3  
C20 C19 C18 C17 0.4  
C17 C18 C19 H191 180.4  
C19 C18 C17 H181 180.0  
C21 C22 C17 C18 1.3  
C17 C22 C21 H221 180.0  
C20 C21 C22 H211 180.0  
C22 C21 C20 C19 0.4  
C22 C21 C20 H201 180.3  
H221 C22 C17 C18 181.3  
C17 C22 H221 C21 180.0  
H221 C22 C21 C20 179.0  
H221 C22 C21 H211 358.9  
C20 C21 C22 H221 179.0  
C22 C21 C20 H211 180.0  
C19 C20 C21 H201 180.0  
C21 C20 C19 C18 359.9  
C21 C20 C19 H191 179.9  
H211 C21 C22 H221 358.9  
C22 C21 H211 C20 180.0  
H211 C21 C20 C19 180.4  
H211 C21 C20 H201 0.4  
C17 C18 C19 C20 0.4  
C19 C20 C21 H211 180.4  
C21 C20 C19 H201 180.0  
C18 C19 C20 H191 180.0  
C20 C19 C18 H181 180.4  
H201 C20 C21 H211 0.4  
C21 C20 H201 C19 180.0  
H201 C20 C19 C18 179.9  
H201 C20 C19 H191 359.9  
C17 C18 C19 H181 180.0  
C18 C19 C20 H201 179.9  
C20 C19 C18 H191 180.0  
H191 C19 C20 H201 359.9  
C20 C19 H191 C18 180.0  
H191 C19 C18 H181 0.4  
C17 C18 H181 C19 180.0  
H181 C18 C19 H191 0.4  
N1 C6 O1 C5 111.6  
O1 C6 C5 C4 0.8  
O1 C6 C5 N2 237.3  
O1 C6 C5 H51 111.6  
N1 C6 C5 O1 230.9  
C4 C5 C6 N2 123.4  
C4 C5 C6 H51 249.2  
C6 C5 C4 C2 58.7  
C6 C5 C4 H41 293.4  
C6 C5 C4 H42 183.9  
N2 C5 C6 H51 125.7  
C6 C5 N2 C8 239.9  
C6 C5 N2 HN21 59.9  
C6 C5 C4 N2 240.8  
C6 C5 C4 H51 115.8  
N2 C5 C4 H51 235.0  
C4 C5 N2 C8 109.2  
C4 C5 N2 HN21 289.2  
C2 C4 C5 H41 125.3  
C2 C4 C5 H42 234.8  
C5 C4 C2 C1 88.0  
C5 C4 C2 C3 206.4  
C5 C4 C2 H21 327.9  
H41 C4 C5 H42 109.5  
C6 C5 N2 C4 130.7  
C6 C5 N2 H51 242.5  
C4 C5 N2 H51 111.8  
N2 C5 C4 C2 177.8  
N2 C5 C4 H41 52.6  
N2 C5 C4 H42 303.1  
C8 N2 C5 HN21 180.0  
C5 N2 C8 O2 328.8  
C5 N2 C8 C9 147.6  
C6 C5 H51 C4 233.3  
C6 C5 H51 N2 114.6  
C4 C5 H51 N2 241.2  
H51 C5 C4 C2 302.9  
H51 C5 C4 H41 177.6  
H51 C5 C4 H42 68.1  
H51 C5 N2 C8 357.4  
H51 C5 N2 HN21 177.4  
C2 C4 C5 N2 177.8  
C2 C4 C5 H51 302.9  
C5 C4 C2 H41 234.7  
C5 C4 C2 H42 125.3  
H41 C4 C2 H42 250.5  
C1 C2 C4 C3 241.5  
C1 C2 C4 H21 120.1  
C4 C2 C1 H11 54.8  
C4 C2 C1 H12 180.0  
C4 C2 C1 H13 305.3  
C3 C2 C4 H21 238.5  
C4 C2 C3 H31 54.7  
C4 C2 C3 H32 180.0  
C4 C2 C3 H33 305.2  
H41 C4 C5 N2 52.6  
H41 C4 C5 H51 177.6  
C5 C4 H41 C2 132.6  
C5 C4 H41 H42 246.3  
C2 C4 H41 H42 113.7  
H41 C4 C2 C1 213.2  
H41 C4 C2 C3 331.7  
H41 C4 C2 H21 93.2  
H42 C4 C5 N2 303.1  
H42 C4 C5 H51 68.1  
C5 C4 H42 C2 227.4  
C5 C4 H42 H41 113.7  
C2 C4 H42 H41 246.3  
H42 C4 C2 C1 322.7  
H42 C4 C2 C3 81.2  
H42 C4 C2 H21 202.6  
C1 C2 C4 H41 213.2  
C1 C2 C4 H42 322.7  
C4 C2 C1 C3 118.8  
C4 C2 C1 H21 240.3  
C3 C2 C1 H21 121.5  
C1 C2 C3 H31 175.0  
C1 C2 C3 H32 300.3  
C1 C2 C3 H33 65.5  
H11 C1 C2 H12 234.8  
H11 C1 C2 H13 109.5  
H12 C1 C2 H13 234.7  
C3 C2 C4 H41 331.7  
C3 C2 C4 H42 81.2  
C4 C2 C3 C1 239.7  
C4 C2 C3 H21 119.7  
C1 C2 C3 H21 240.0  
C3 C2 C1 H11 296.0  
C3 C2 C1 H12 61.2  
C3 C2 C1 H13 186.5  
H31 C3 C2 H32 234.7  
H31 C3 C2 H33 109.5  
H32 C3 C2 H33 234.7  
H21 C2 C4 H41 93.2  
H21 C2 C4 H42 202.6  
C4 C2 H21 C1 121.1  
C4 C2 H21 C3 240.4  
C1 C2 H21 C3 119.3  
H21 C2 C1 H11 174.5  
H21 C2 C1 H12 299.7  
H21 C2 C1 H13 65.0  
H21 C2 C3 H31 295.1  
H21 C2 C3 H32 60.3  
H21 C2 C3 H33 185.6  
H11 C1 C2 C3 296.0  
H11 C1 C2 H21 174.5  
C2 C1 H11 H12 124.8  
C2 C1 H11 H13 242.4  
H12 C1 H11 H13 117.6  
H12 C1 C2 C3 61.2  
H12 C1 C2 H21 299.7  
C2 C1 H12 H11 234.8  
C2 C1 H12 H13 125.2  
H11 C1 H12 H13 250.5  
H13 C1 C2 C3 186.5  
H13 C1 C2 H21 65.0  
C2 C1 H13 H11 117.6  
C2 C1 H13 H12 235.2  
H11 C1 H13 H12 117.6  
H31 C3 C2 H21 295.1  
C2 C3 H31 H32 123.0  
C2 C3 H31 H33 241.5  
H32 C3 H31 H33 118.5  
H32 C3 C2 H21 60.3  
C2 C3 H32 H31 234.7  
C2 C3 H32 H33 125.3  
H31 C3 H32 H33 250.5  
H33 C3 C2 H21 185.6  
C2 C3 H33 H31 118.5  
C2 C3 H33 H32 237.0  
H31 C3 H33 H32 118.5  
C8 N2 C5 H51 357.4  
C5 N2 C8 HN21 180.0  
O2 C8 N2 C9 181.2  
N2 C8 C9 C10 126.8  
N2 C8 C9 N3 5.2  
N2 C8 C9 H91 246.6  
HN21 N2 C5 H51 177.4  
C5 N2 HN21 C8 180.0  
HN21 N2 C8 O2 148.8  
HN21 N2 C8 C9 327.6  
O2 C8 N2 HN21 148.8  
N2 C8 O2 C9 178.9  
O2 C8 C9 C10 305.7  
O2 C8 C9 N3 184.1  
O2 C8 C9 H91 65.5  
C9 C8 N2 HN21 327.6  
N2 C8 C9 O2 181.2  
C10 C9 C8 N3 121.6  
C10 C9 C8 H91 240.2  
C8 C9 C10 H101 54.7  
C8 C9 C10 H102 180.0  
C8 C9 C10 H103 305.2  
N3 C9 C8 H91 118.6  
C8 C9 N3 C11 82.7  
C8 C9 N3 C12 260.7  
C8 C9 C10 N3 237.1  
C8 C9 C10 H91 118.4  
N3 C9 C10 H91 241.3  
C10 C9 N3 C11 320.8  
C10 C9 N3 C12 138.9  
H101 C10 C9 H102 234.8  
H101 C10 C9 H103 109.5  
H102 C10 C9 H103 234.7  
C8 C9 N3 C10 121.8  
C8 C9 N3 H91 241.7  
C10 C9 N3 H91 119.8  
N3 C9 C10 H101 177.7  
N3 C9 C10 H102 302.9  
N3 C9 C10 H103 68.2  
C11 N3 C9 C12 181.9  
C9 N3 C11 H111 54.7  
C9 N3 C11 H112 180.0  
C9 N3 C11 H113 305.3  
C9 N3 C12 O3 181.3  
C9 N3 C12 C13 3.0  
C8 C9 H91 C10 240.3  
C8 C9 H91 N3 120.8  
C10 C9 H91 N3 240.5  
H91 C9 C10 H101 296.3  
H91 C9 C10 H102 61.6  
H91 C9 C10 H103 186.9  
H91 C9 N3 C11 201.0  
H91 C9 N3 C12 19.1  
H101 C10 C9 N3 177.7  
H101 C10 C9 H91 296.3  
C9 C10 H101 H102 124.0  
C9 C10 H101 H103 242.0  
H102 C10 H101 H103 118.0  
H102 C10 C9 N3 302.9  
H102 C10 C9 H91 61.6  
C9 C10 H102 H101 234.8  
C9 C10 H102 H103 125.3  
H101 C10 H102 H103 250.5  
H103 C10 C9 N3 68.2  
H103 C10 C9 H91 186.9  
C9 C10 H103 H101 118.0  
C9 C10 H103 H102 236.0  
H101 C10 H103 H102 118.0  
C11 N3 C9 H91 201.0  
C9 N3 C11 C12 178.2  
C11 N3 C12 O3 359.5  
C11 N3 C12 C13 181.2  
H111 C11 N3 H112 234.8  
H111 C11 N3 H113 109.5  
H112 C11 N3 H113 234.7  
C12 N3 C9 H91 19.1  
C9 N3 C12 C11 181.8  
C12 N3 C11 H111 236.5  
C12 N3 C11 H112 1.7  
C12 N3 C11 H113 127.0  
O3 C12 N3 C13 178.3  
N3 C12 C13 N4 69.3  
N3 C12 C13 H131 304.0  
N3 C12 C13 H132 194.6  
H111 C11 N3 C12 236.5  
N3 C11 H111 H112 132.9  
N3 C11 H111 H113 246.5  
H112 C11 H111 H113 113.6  
H112 C11 N3 C12 1.7  
N3 C11 H112 H111 234.7  
N3 C11 H112 H113 125.3  
H111 C11 H112 H113 250.5  
H113 C11 N3 C12 127.0  
N3 C11 H113 H111 113.5  
N3 C11 H113 H112 227.1  
H111 C11 H113 H112 113.5  
N3 C12 O3 C13 181.8  
O3 C12 C13 N4 251.1  
O3 C12 C13 H131 125.8  
O3 C12 C13 H132 16.3  
N3 C12 C13 O3 178.2  
N4 C13 C12 H131 125.3  
N4 C13 C12 H132 234.7  
C12 C13 N4 C14 212.4  
C12 C13 N4 HN41 32.4  
H131 C13 C12 H132 109.5  
C15 C14 N4 C13 171.3  
C12 C13 N4 H131 234.7  
C12 C13 N4 H132 125.3  
H131 C13 N4 H132 250.5  
C14 N4 C13 HN41 180.0  
C13 N4 C14 O4 353.3  
C12 C13 H131 N4 122.2  
C12 C13 H131 H132 241.1  
N4 C13 H131 H132 118.9  
H131 C13 N4 C14 337.6  
H131 C13 N4 HN41 157.6  
C12 C13 H132 N4 237.8  
C12 C13 H132 H131 118.9  
N4 C13 H132 H131 241.1  
H132 C13 N4 C14 87.1  
H132 C13 N4 HN41 267.1  
C15 C14 N4 O4 177.9  
C14 N4 C13 H131 337.6  
C14 N4 C13 H132 87.1  
C13 N4 C14 HN41 180.0  
HN41 N4 C13 H131 157.6  
HN41 N4 C13 H132 267.1  
C13 N4 HN41 C14 180.0  
HN41 N4 C14 O4 173.3  
C15 C14 O4 N4 182.0  
O4 C14 N4 HN41 173.3