PDB Chemical Component TTW

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TTW

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O2 C2 1.218 1.216
N3 C2 1.331 1.346
N3 C4 1.346 1.348
O4 C4 1.230 1.218
C2 N1 1.435 1.346
C4 C5 1.498 1.416
N1 C1' 1.469 1.465
N1 C6 1.355 1.368
C5 C6 1.387 1.350
C5 C5M 1.535 1.507
C1' C2' 1.542 1.541
C1' O4' 1.422 1.438
C2' C3' 1.541 1.548
O4' C4' 1.473 1.444
C3' C4' 1.505 1.550
C3' O3' 1.455 1.429
C4' C5' 1.547 1.529
O5' C5' 1.442 1.429
O5' PA 1.639 1.609
O1A PA 1.497 1.480
O1B PB 1.520 1.480
PA O3A 1.597 1.610
PA O2A 1.514 1.610
O3A PB 1.650 1.610
PB N3B 1.621 1.683
PB O2B 1.484 1.610
N3B PG 1.679 1.684
PG O3G 1.479 1.479
PG O2G 1.511 1.610
PG O1G 1.471 1.610
N3 H1 1.000 0.970
C5M H2 1.100 1.089
C5M H3 1.100 1.090
C5M H4 1.100 1.090
C6 H5 1.080 1.080
C1' H6 1.100 1.089
C2' H7 1.100 1.091
C2' H8 1.100 1.090
C3' H9 1.100 1.091
O3' H10 0.949 0.966
C4' H11 1.100 1.090
C5' H12 1.100 1.090
C5' H13 1.100 1.091
O2A H14 0.950 0.966
O2B H15 0.950 0.967
N3B H16 1.000 1.009
O1G H17 0.950 0.967
O2G H18 0.950 0.967

Bond Angles for TTW

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O2 C2 N1 120.7 119.5
N3 C2 N1 122.4 120.9
C2 N3 H1 120.1 119.8
N3 C4 C5 120.7 119.4
O4 C4 C5 119.5 120.3
C2 N1 C1' 119.8 119.7
C2 N1 C6 119.0 120.6
C4 C5 C6 116.6 119.1
C4 C5 C5M 121.7 120.5
N1 C1' C2' 111.9 109.9
N1 C1' O4' 108.1 109.8
N1 C1' H6 110.7 109.9
N1 C6 H5 119.3 120.1
C5M C5 C6 121.8 120.4
C5 C6 H5 119.3 120.2
C5 C5M H2 109.5 109.5
C5 C5M H3 109.5 109.5
C5 C5M H4 109.5 109.4
O4' C1' C2' 104.8 107.3
C1' C2' C3' 105.9 104.2
C2' C1' H6 109.7 109.9
C1' C2' H7 110.4 110.4
C1' C2' H8 110.4 110.5
C1' O4' C4' 110.5 107.0
O4' C1' H6 111.4 110.0
C2' C3' C4' 100.1 102.1
C2' C3' O3' 113.5 110.9
C3' C2' H7 110.4 110.5
C3' C2' H8 110.4 110.5
C2' C3' H9 109.0 110.9
O4' C4' C3' 106.7 103.5
O4' C4' C5' 111.7 110.6
O4' C4' H11 109.2 110.6
O3' C3' C4' 114.2 110.9
C3' C4' C5' 112.2 110.7
C4' C3' H9 109.4 110.9
C3' C4' H11 108.8 110.6
O3' C3' H9 110.1 110.8
C3' O3' H10 109.5 114.1
C5' C4' H11 108.2 110.7
C4' C5' H12 110.3 109.5
C4' C5' H13 110.4 109.5
O5' C5' H12 110.4 109.4
O5' C5' H13 110.4 109.4
O5' PA O3A 107.5 109.5
O5' PA O2A 111.9 109.5
O1A PA O3A 111.2 109.5
O1A PA O2A 108.3 109.5
O1B PB N3B 109.8 109.5
O1B PB O2B 109.4 109.5
O2A PA O3A 111.1 109.4
PA O3A PB 127.8 134.0
PA O2A H14 109.5 114.1
O3A PB N3B 103.3 109.5
O3A PB O2B 110.2 109.5
O2B PB N3B 113.2 109.5
PB N3B PG 122.3 111.0
PB N3B H16 106.2 111.0
PB O2B H15 109.5 114.0
N3B PG O3G 112.0 109.5
N3B PG O2G 105.4 109.5
N3B PG O1G 105.4 109.4
PG N3B H16 106.2 111.0
O2G PG O3G 115.9 109.5
O1G PG O3G 107.8 109.5
O1G PG O2G 109.9 109.5
PG O2G H18 109.5 114.0
PG O1G H17 109.5 113.9
H2 C5M H3 109.5 109.5
H2 C5M H4 109.5 109.5
H3 C5M H4 109.4 109.5
H7 C2' H8 109.4 110.5
H12 C5' H13 109.5 109.5

Torsion Angles for TTW

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N3 C2 O2 N1 177.8 179.9
O2 C2 N3 H1 1.3 0.1
O2 C2 N1 C1' 0.6 359.9
O2 C2 N1 C6 178.7 179.8
O2 C2 N3 N1 182.3 180.1
C2 N3 C4 C5 0.8 0.4
N3 C2 N1 C1' 183.0 180.0
N3 C2 N1 C6 1.0 359.9
O4 C4 N3 C5 179.9 179.6
N3 C4 C5 C6 359.3 359.7
N3 C4 C5 C5M 179.8 179.7
N3 C4 O4 C5 180.1 180.4
O4 C4 C5 C6 179.4 180.0
O4 C4 C5 C5M 359.9 0.1
N1 C2 N3 H1 179.0 180.0
C2 N1 C1' C2' 103.8 295.1
C2 N1 C1' O4' 218.8 52.9
C2 N1 C1' H6 341.1 174.0
C2 N1 C6 H5 179.1 180.2
C5M C5 C4 C6 180.5 180.1
C4 C5 C6 H5 180.7 180.0
C4 C5 C5M H2 180.0 360.0
C4 C5 C5M H3 300.0 120.0
C4 C5 C5M H4 60.0 240.0
C2 N1 C1' C6 178.0 179.9
C1' N1 C6 H5 357.1 0.1
O4' C1' N1 C2' 115.0 117.8
N1 C1' C2' C3' 95.7 121.5
C2' C1' N1 H6 122.7 121.1
N1 C1' C2' H7 215.2 240.1
N1 C1' C2' H8 336.3 2.7
N1 C1' O4' C4' 240.7 214.1
O4' C1' N1 H6 237.7 238.9
C2 N1 C6 C1' 182.0 180.1
C5 C6 N1 H5 180.0 180.0
C2 N1 C6 C5 359.1 0.1
C4 C5 C6 C5M 180.5 180.1
N1 C6 C5 H5 180.0 180.0
C6 C5 C5M H2 0.5 180.0
C6 C5 C5M H3 120.5 300.1
C6 C5 C5M H4 240.5 60.0
C4 C5 C5M C6 179.5 179.9
C5M C5 C6 H5 0.2 360.0
H2 C5M C5 H3 240.0 240.0
H2 C5M C5 H4 120.0 120.0
H3 C5M C5 H4 240.0 240.0
N1 C1' C2' O4' 117.0 119.4
N1 C1' C2' H6 236.7 238.9
C2' C1' O4' C4' 0.3 333.5
O4' C1' C2' H6 119.8 119.5
C1' C2' C3' C4' 32.7 20.8
C1' C2' C3' O3' 154.8 139.1
C3' C2' C1' H7 240.5 241.3
C3' C2' C1' H8 119.5 118.7
C1' C2' C3' H9 277.9 262.6
H7 C2' C1' H8 238.9 237.4
N1 C1' O4' C2' 240.5 240.6
N1 C1' O4' H6 121.9 121.1
O4' C1' C2' C3' 338.8 2.1
C2' C1' O4' H6 241.4 240.5
O4' C1' C2' H7 98.2 120.8
O4' C1' C2' H8 219.3 243.4
C1' O4' C4' C3' 21.4 40.1
C1' O4' C4' C5' 144.4 158.6
C1' O4' C4' H11 264.0 281.6
C3' C2' C1' H6 219.0 242.5
C1' C2' C3' H7 119.5 118.7
C1' C2' C3' H8 240.5 241.3
O4' C4' C3' C2' 327.4 323.0
O3' C3' C2' C4' 122.1 118.2
C2' C3' C4' C5' 204.8 204.5
C4' C3' C2' H9 114.8 118.2
C2' C3' C4' H11 85.0 81.5
O3' C3' C2' H9 236.9 236.4
C2' C3' O3' H10 125.8 61.4
H7 C2' C3' H8 121.1 122.6
C4' O4' C1' C2' 0.3 333.5
C4' O4' C1' H6 118.9 93.0
C2' C3' C4' O4' 327.4 323.0
O3' C3' C4' O4' 205.8 204.8
C3' C4' O4' C5' 237.0 241.5
O4' C4' C3' H9 81.8 81.2
C3' C4' O4' H11 117.4 118.5
C5' C4' O4' H11 240.4 237.0
O4' C4' C5' H12 59.2 186.5
O4' C4' C5' H13 180.3 306.4
C2' C3' C4' O3' 121.6 118.2
C4' C3' C2' H7 273.2 262.2
C4' C3' C2' H8 152.1 139.6
C2' C3' C4' H9 245.6 241.8
O4' C4' C3' C5' 122.6 118.5
O4' C4' C3' H11 242.3 241.5
O3' C3' C4' H9 124.0 123.6
C4' C3' O3' H10 239.7 174.2
C5' C4' C3' H11 119.7 123.0
C3' C4' C5' H12 178.9 300.5
C3' C4' C5' H13 300.0 60.5
C2' C3' O3' C4' 246.1 247.3
O3' C3' C2' H7 35.3 20.4
O3' C3' C2' H8 274.3 257.8
C2' C3' O3' H9 122.4 123.6
O4' C4' C3' O3' 205.8 204.8
O3' C3' C4' C5' 83.2 86.3
C4' C3' O3' H9 236.4 236.4
O3' C3' C4' H11 323.5 323.2
O4' C4' C5' C3' 240.3 245.9
O4' C4' C5' H11 120.2 123.0
C5' C4' C3' H9 319.2 322.7
C3' C4' C5' H11 239.9 237.0
O5' C5' C4' H12 240.6 240.0
O5' C5' C4' H13 119.5 120.0
H12 C5' C4' H13 238.9 240.0
O5' C5' C4' H11 179.6 303.5
C4' C5' O5' H12 119.4 120.0
C4' C5' O5' H13 240.6 240.0
H12 C5' O5' H13 121.1 119.9
PA O5' C5' H12 96.9 60.0
PA O5' C5' H13 335.8 300.0
O1A PA O5' O3A 119.4 120.0
O1A PA O5' O2A 241.7 240.0
O2A PA O5' O3A 237.7 240.0
O5' PA O3A PB 284.6 164.9
O5' PA O2A H14 242.6 60.0
O5' PA O1A O3A 243.0 240.0
O5' PA O1A O2A 120.7 120.0
O2A PA O1A O3A 122.4 120.0
O1A PA O3A PB 168.0 44.9
O1A PA O2A H14 0.0 180.0
O3A PB O1B N3B 113.5 120.0
O3A PB O1B O2B 238.3 240.0
O2B PB O1B N3B 235.2 239.9
O1B PB N3B PG 198.2 300.0
O1B PB N3B H16 319.9 63.9
O1B PB O2B H15 0.0 180.0
O5' PA O3A O2A 237.2 240.0
O1A PA O3A O2A 120.7 120.0
O3A PA O2A H14 122.4 300.0
PA O3A PB N3B 227.9 180.0
PA O3A PB O2B 349.1 300.1
O5' PA O2A O3A 120.2 120.0
O1A PA O2A O3A 237.6 240.0
O2A PA O3A PB 47.3 284.9
O1B PB O3A N3B 242.4 240.0
O1B PB O3A O2B 121.2 120.0
O2B PB O3A N3B 121.2 120.0
O3A PB N3B PG 79.9 180.0
O3A PB N3B H16 201.6 304.0
O3A PB O2B H15 122.1 299.9
O1B PB N3B O2B 237.4 240.0
O3A PB N3B O2B 119.1 120.0
N3B PB O2B H15 237.2 60.0
PB N3B PG O3G 220.6 60.0
PB N3B PG O2G 347.5 300.0
PB N3B PG O1G 103.7 180.0
PG N3B PB H16 238.2 236.0
O1B PB O2B N3B 122.8 120.0
O3A PB O2B N3B 244.9 240.0
O2B PB N3B PG 320.7 60.0
O2B PB N3B H16 82.5 184.0
PB N3B PG H16 121.7 124.0
O2G PG N3B O3G 126.8 240.0
O1G PG N3B O3G 243.1 120.0
O1G PG N3B O2G 116.2 240.0
N3B PG O2G H18 235.6 300.0
N3B PG O1G H17 119.7 180.0
N3B PG O3G O2G 120.9 240.0
N3B PG O3G O1G 244.5 120.0
O3G PG N3B H16 98.9 296.0
O1G PG O3G O2G 236.4 120.0
O3G PG O2G H18 360.0 180.0
O3G PG O1G H17 360.0 300.0
N3B PG O2G O3G 235.6 120.0
N3B PG O2G O1G 113.2 240.0
O2G PG N3B H16 225.7 176.0
O1G PG O2G O3G 122.4 240.0
O2G PG O1G H17 232.8 60.0
N3B PG O1G O3G 119.8 240.0
N3B PG O1G O2G 246.9 120.0
O1G PG N3B H16 342.0 56.1
O2G PG O1G O3G 232.9 120.0
O1G PG O2G H18 122.4 60.0
H1 N3 C2 N1 179.0 180.0
H1 N3 C4 C5 180.8 180.2
H2 C5M C5 C6 0.5 180.0
C5 C5M H2 H3 120.0 120.0
C5 C5M H2 H4 240.0 240.0
H3 C5M H2 H4 120.0 120.0
H3 C5M C5 C6 120.5 300.1
C5 C5M H3 H2 240.0 240.0
C5 C5M H3 H4 120.0 119.9
H2 C5M H3 H4 240.0 240.0
H4 C5M C5 C6 240.5 60.0
C5 C5M H4 H2 120.0 120.0
C5 C5M H4 H3 240.0 240.0
H2 C5M H4 H3 120.0 120.0
N1 C1' H6 C2' 124.0 121.1
N1 C1' H6 O4' 239.6 239.0
O4' C1' H6 C2' 244.4 242.1
H6 C1' C2' C3' 219.0 242.5
H6 C1' C2' H7 338.5 1.2
H6 C1' C2' H8 99.6 123.8
H6 C1' O4' C4' 118.9 93.0
C1' C2' H7 C3' 243.3 245.2
H7 C2' C1' H6 338.5 1.2
C1' C2' H7 H8 121.6 122.6
H7 C2' C3' C4' 273.2 262.2
H7 C2' C3' O3' 35.3 20.4
C3' C2' H7 H8 238.4 237.4
H7 C2' C3' H9 158.4 144.0
C1' C2' H8 C3' 116.7 114.8
H8 C2' C1' H6 99.6 123.8
C1' C2' H8 H7 238.4 237.4
H8 C2' C3' C4' 152.1 139.6
H8 C2' C3' O3' 274.3 257.8
C3' C2' H8 H7 121.6 122.6
H8 C2' C3' H9 37.4 21.4
C2' C3' H9 C4' 108.6 112.7
C2' C3' H9 O3' 234.9 236.4
H9 C3' C2' H7 158.4 144.0
H9 C3' C2' H8 37.4 21.4
O3' C3' H9 C4' 233.7 236.4
H9 C3' C4' C5' 319.2 322.7
H9 C3' C4' H11 199.5 199.7
H9 C3' O3' H10 3.4 297.8
H10 O3' C3' C4' 239.7 174.2
H10 O3' C3' H9 3.4 297.8
O4' C4' H11 C3' 116.1 114.0
O4' C4' H11 C5' 238.3 237.0
C3' C4' H11 C5' 122.2 123.0
H11 C4' C3' H9 199.5 199.7
H11 C4' C5' H12 299.0 63.5
H11 C4' C5' H13 60.1 183.5
H12 C5' C4' H11 299.0 63.5
C4' C5' H12 H13 121.6 120.0
O5' C5' H12 H13 238.3 240.1
H13 C5' C4' H11 60.1 183.5
C4' C5' H13 H12 238.4 240.0
O5' C5' H13 H12 121.7 119.9
H14 O2A PA O3A 122.4 300.0
H15 O2B PB N3B 237.2 60.0
PB N3B H16 PG 228.5 236.1
H16 N3B PG O3G 98.9 296.0
H16 N3B PG O2G 225.7 176.0
H16 N3B PG O1G 342.0 56.1
H17 O1G PG O3G 360.0 300.0
H17 O1G PG O2G 232.8 60.0
H18 O2G PG O3G 360.0 180.0