PDB Chemical Component TTP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TTP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PA O1A 1.486 1.479
PA O2A 1.488 1.610
PA O3A 1.576 1.610
PA O5' 1.592 1.609
O2A HOA2 0.950 0.966
O3A PB 1.598 1.610
PB O1B 1.468 1.480
PB O2B 1.476 1.608
PB O3B 1.616 1.610
O2B HOB2 0.951 0.968
O3B PG 1.681 1.610
PG O1G 1.473 1.479
PG O2G 1.480 1.611
PG O3G 1.584 1.609
O2G HOG2 0.950 0.967
O3G HOG3 0.950 0.966
O5' C5' 1.467 1.428
C5' C4' 1.549 1.530
C5' H5'1 1.115 1.090
C5' H5'2 1.116 1.090
C4' O4' 1.421 1.445
C4' C3' 1.529 1.550
C4' H4' 1.114 1.090
O4' C1' 1.384 1.438
C3' O3' 1.424 1.428
C3' C2' 1.537 1.548
C3' H3' 1.115 1.090
O3' HO3' 0.949 0.967
C2' C1' 1.522 1.541
C2' H2'1 1.115 1.089
C2' H2'2 1.114 1.090
C1' N1 1.521 1.465
C1' H1' 1.114 1.091
N1 C2 1.426 1.345
N1 C6 1.346 1.369
C2 O2 1.243 1.216
C2 N3 1.367 1.345
N3 C4 1.327 1.348
N3 HN3 1.020 0.970
C4 O4 1.346 1.218
C4 C5 1.450 1.415
C5 C5M 1.498 1.507
C5 C6 1.343 1.350
C5M HM51 1.116 1.090
C5M HM52 1.115 1.090
C5M HM53 1.116 1.090
C6 H6 1.103 1.080

Bond Angles for TTP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1A PA O2A 118.5 109.5
O1A PA O3A 109.2 109.5
O1A PA O5' 110.2 109.5
O2A PA O3A 107.4 109.4
O2A PA O5' 106.2 109.5
PA O2A HOA2 118.4 106.9
O3A PA O5' 104.4 109.5
PA O3A PB 128.3 106.8
PA O5' C5' 114.8 106.8
O3A PB O1B 105.4 109.5
O3A PB O2B 109.0 109.5
O3A PB O3B 101.7 109.4
O1B PB O2B 118.7 109.5
O1B PB O3B 108.6 109.5
O2B PB O3B 111.9 109.5
PB O2B HOB2 109.0 106.8
PB O3B PG 138.8 106.8
O3B PG O1G 109.5 109.5
O3B PG O2G 110.2 109.5
O3B PG O3G 103.2 109.5
O1G PG O2G 116.6 109.5
O1G PG O3G 108.4 109.5
O2G PG O3G 108.1 109.4
PG O2G HOG2 110.3 106.8
PG O3G HOG3 103.2 106.9
O5' C5' C4' 111.8 109.5
O5' C5' H5'1 111.3 109.5
O5' C5' H5'2 111.3 109.5
C4' C5' H5'1 111.4 109.5
C4' C5' H5'2 111.4 109.5
C5' C4' O4' 109.6 110.8
C5' C4' C3' 114.5 110.7
C5' C4' H4' 104.9 110.5
H5'1 C5' H5'2 98.9 109.4
O4' C4' C3' 106.5 103.6
O4' C4' H4' 113.3 110.5
C4' O4' C1' 110.9 106.9
C3' C4' H4' 108.2 110.6
C4' C3' O3' 110.4 110.9
C4' C3' C2' 103.8 102.1
C4' C3' H3' 114.1 110.9
O4' C1' C2' 107.4 107.4
O4' C1' N1 108.5 109.9
O4' C1' H1' 112.8 109.9
O3' C3' C2' 113.8 110.9
O3' C3' H3' 104.2 110.8
C3' O3' HO3' 110.4 106.8
C2' C3' H3' 110.8 110.9
C3' C2' C1' 100.7 104.2
C3' C2' H2'1 115.6 110.5
C3' C2' H2'2 115.6 110.5
C1' C2' H2'1 115.6 110.5
C1' C2' H2'2 115.6 110.4
C2' C1' N1 113.3 109.9
C2' C1' H1' 108.0 109.9
H2'1 C2' H2'2 94.9 110.5
N1 C1' H1' 106.8 109.9
C1' N1 C2 110.2 119.7
C1' N1 C6 129.4 119.7
C2 N1 C6 120.4 120.6
N1 C2 O2 121.2 119.5
N1 C2 N3 118.0 120.9
N1 C6 C5 122.4 119.7
N1 C6 H6 118.9 120.2
O2 C2 N3 120.9 119.5
C2 N3 C4 121.0 120.3
C2 N3 HN3 121.0 119.8
C4 N3 HN3 118.0 119.9
N3 C4 O4 116.8 120.3
N3 C4 C5 121.5 119.4
O4 C4 C5 121.7 120.3
C4 C5 C5M 120.7 120.4
C4 C5 C6 116.7 119.1
C5M C5 C6 122.6 120.5
C5 C5M HM51 120.7 109.5
C5 C5M HM52 108.3 109.5
C5 C5M HM53 108.2 109.5
C5 C6 H6 118.7 120.1
HM51 C5M HM52 108.2 109.4
HM51 C5M HM53 108.2 109.5
HM52 C5M HM53 101.6 109.5

Torsion Angles for TTP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2A PA O1A O3A 236.6 240.0
O2A PA O1A O5' 122.5 120.0
O1A PA O2A HOA2 179.9 180.0
O3A PA O1A O5' 245.8 240.0
O1A PA O3A PB 269.2 300.0
O1A PA O5' C5' 166.1 60.0
O1A PA O2A O3A 124.2 120.0
O1A PA O2A O5' 235.5 240.0
O3A PA O2A O5' 111.3 120.0
O2A PA O3A PB 38.9 60.0
O2A PA O5' C5' 36.6 299.9
O1A PA O3A O2A 230.3 240.0
O1A PA O3A O5' 117.9 120.0
O2A PA O3A O5' 247.6 240.0
O3A PA O2A HOA2 55.7 60.0
O3A PA O5' C5' 283.3 180.0
PA O3A PB O1B 29.4 300.0
PA O3A PB O2B 157.9 60.0
PA O3A PB O3B 276.2 180.0
O1A PA O5' O2A 129.5 120.0
O1A PA O5' O3A 242.8 240.0
O2A PA O5' O3A 113.4 120.0
O5' PA O2A HOA2 304.4 300.0
O5' PA O3A PB 151.3 180.0
PA O5' C5' C4' 201.2 180.0
PA O5' C5' H5'1 326.5 60.0
PA O5' C5' H5'2 75.9 300.1
HOA2 O2A PA O3A 55.7 60.0
HOA2 O2A PA O5' 304.4 300.0
PB O3A PA O5' 151.3 180.0
O1B PB O3A O2B 231.5 240.0
O1B PB O3A O3B 113.2 120.0
O2B PB O3A O3B 241.7 240.0
O3A PB O2B HOB2 180.0 60.0
O3A PB O3B PG 157.2 180.0
O3A PB O1B O2B 122.5 120.0
O3A PB O1B O3B 251.7 240.0
O2B PB O1B O3B 129.3 120.0
O1B PB O2B HOB2 300.7 180.0
O1B PB O3B PG 46.3 60.1
O3A PB O2B O1B 239.4 240.0
O3A PB O2B O3B 111.6 120.0
O1B PB O2B O3B 232.3 240.0
O2B PB O3B PG 273.4 300.0
O3A PB O3B O1B 110.9 120.0
O3A PB O3B O2B 243.8 240.0
O1B PB O3B O2B 132.9 120.0
O3B PB O2B HOB2 68.4 300.0
PB O3B PG O1G 325.8 60.0
PB O3B PG O2G 95.3 180.0
PB O3B PG O3G 210.6 299.9
HOB2 O2B PB O3B 68.4 300.0
O1G PG O3B O2G 230.5 240.0
O1G PG O3B O3G 115.2 120.1
O2G PG O3B O3G 244.7 240.1
O3B PG O2G HOG2 180.0 179.9
O3B PG O3G HOG3 180.0 300.0
O3B PG O1G O2G 126.0 120.0
O3B PG O1G O3G 248.1 240.0
O2G PG O1G O3G 122.2 120.0
O1G PG O2G HOG2 305.6 299.9
O1G PG O3G HOG3 64.0 180.0
O3B PG O2G O1G 234.4 240.0
O3B PG O2G O3G 112.1 120.0
O1G PG O2G O3G 237.7 240.0
O2G PG O3G HOG3 296.8 60.0
O3B PG O3G O1G 116.0 120.0
O3B PG O3G O2G 243.2 240.0
O1G PG O3G O2G 127.2 120.0
O3G PG O2G HOG2 67.9 60.0
HOG2 O2G PG O3G 67.9 60.0
C4' C5' O5' H5'1 234.7 120.0
C4' C5' O5' H5'2 125.3 240.0
O5' C5' C4' O4' 295.3 65.7
O5' C5' C4' C3' 54.8 180.0
O5' C5' C4' H4' 173.4 302.8
H5'1 C5' O5' H5'2 250.6 120.0
O5' C5' C4' H5'1 125.3 240.0
O5' C5' C4' H5'2 234.7 120.0
H5'1 C5' C4' H5'2 109.4 240.0
O4' C4' C5' C3' 240.4 245.7
O4' C4' C5' H4' 121.9 122.8
C5' C4' O4' C1' 127.4 158.5
C3' C4' C5' H4' 241.5 237.2
C5' C4' C3' O3' 134.0 86.1
C5' C4' C3' C2' 256.4 204.3
C5' C4' C3' H3' 17.0 322.5
O5' C5' H5'1 C4' 234.4 120.0
O5' C5' H5'1 H5'2 117.2 240.0
C4' C5' H5'1 H5'2 242.7 120.0
H5'1 C5' C4' O4' 170.0 185.7
H5'1 C5' C4' C3' 289.5 300.0
H5'1 C5' C4' H4' 48.1 62.9
O5' C5' H5'2 C4' 125.5 239.9
O5' C5' H5'2 H5'1 242.8 120.0
C4' C5' H5'2 H5'1 117.3 240.0
H5'2 C5' C4' O4' 60.5 305.7
H5'2 C5' C4' C3' 180.1 60.0
H5'2 C5' C4' H4' 298.6 182.8
O4' C4' C5' H5'1 170.0 185.7
O4' C4' C5' H5'2 60.5 305.7
C5' C4' O4' C3' 124.4 118.7
C5' C4' O4' H4' 243.2 237.2
C3' C4' O4' H4' 118.8 118.5
O4' C4' C3' O3' 255.3 204.8
O4' C4' C3' C2' 17.6 323.1
O4' C4' C3' H3' 138.3 81.3
C4' O4' C1' C2' 337.0 333.7
C4' O4' C1' N1 214.2 214.2
C4' O4' C1' H1' 96.0 93.2
C3' C4' C5' H5'1 289.5 300.0
C3' C4' C5' H5'2 180.1 60.0
C5' C4' C3' O4' 238.7 241.2
C5' C4' C3' H4' 116.7 122.8
O4' C4' C3' H4' 237.9 241.6
C3' C4' O4' C1' 3.0 39.8
O3' C3' C4' C2' 237.6 241.8
O3' C3' C4' H3' 117.0 123.6
C4' C3' O3' HO3' 180.0 174.2
C2' C3' C4' H3' 239.3 241.8
C4' C3' C2' C1' 330.7 20.9
C4' C3' C2' H2'1 95.9 262.2
C4' C3' C2' H2'2 205.5 139.5
H4' C4' C5' H5'1 48.1 62.9
H4' C4' C5' H5'2 298.6 182.8
C5' C4' H4' O4' 119.5 123.0
C5' C4' H4' C3' 237.3 237.1
O4' C4' H4' C3' 117.8 114.1
H4' C4' O4' C1' 244.2 281.4
H4' C4' C3' O3' 17.3 323.3
H4' C4' C3' C2' 139.7 81.5
H4' C4' C3' H3' 260.4 199.7
C1' O4' C4' C3' 3.0 39.8
C1' O4' C4' H4' 244.2 281.4
C3' C2' C1' O4' 32.4 1.9
O4' C1' C2' H2'1 267.2 120.6
O4' C1' C2' H2'2 157.7 243.2
C2' C1' O4' N1 122.9 119.5
C2' C1' O4' H1' 241.1 240.5
N1 C1' O4' H1' 118.2 121.0
O4' C1' N1 C2 233.9 58.3
O4' C1' N1 C6 53.7 238.3
O3' C3' C4' H4' 17.3 323.3
C4' C3' O3' C2' 116.3 112.7
C4' C3' O3' H3' 237.1 236.4
C2' C3' O3' H3' 120.8 123.7
O3' C3' C2' C1' 90.8 139.1
O3' C3' C2' H2'1 216.0 20.4
O3' C3' C2' H2'2 325.6 257.7
C2' C3' C4' H4' 139.7 81.5
C4' C3' C2' O3' 239.9 241.8
C4' C3' C2' H3' 122.8 118.2
O4' C1' C2' C3' 32.4 1.9
O3' C3' C2' H3' 243.0 236.4
C2' C3' O3' HO3' 63.7 61.5
C1' C2' C3' H2'1 234.8 118.7
C1' C2' C3' H2'2 125.3 241.4
C3' C2' C1' N1 152.3 121.5
C3' C2' C1' H1' 270.4 242.4
H2'1 C2' C3' H2'2 250.5 122.7
H3' C3' C4' H4' 260.4 199.7
C4' C3' H3' O3' 120.5 123.6
C4' C3' H3' C2' 243.3 247.3
O3' C3' H3' C2' 122.8 123.7
H3' C3' O3' HO3' 302.9 297.8
H3' C3' C2' C1' 207.9 262.7
H3' C3' C2' H2'1 333.1 144.0
H3' C3' C2' H2'2 82.6 21.4
HO3' O3' C3' C2' 63.7 61.5
HO3' O3' C3' H3' 302.9 297.8
O4' C1' C2' N1 240.2 240.5
O4' C1' C2' H1' 122.0 119.5
C1' C2' C3' H3' 207.9 262.7
C3' C2' C1' H2'1 125.2 241.3
C3' C2' C1' H2'2 234.7 118.7
H2'1 C2' C1' H2'2 109.5 237.4
N1 C1' C2' H1' 241.8 239.0
C2' C1' N1 C2 114.7 300.3
C2' C1' N1 C6 294.5 120.3
H2'1 C2' C3' H3' 333.1 144.0
C3' C2' H2'1 C1' 242.9 114.8
C3' C2' H2'1 H2'2 121.4 237.3
C1' C2' H2'1 H2'2 238.6 122.6
H2'1 C2' C1' N1 27.1 240.1
H2'1 C2' C1' H1' 145.2 1.1
H2'2 C2' C3' H3' 82.6 21.4
C3' C2' H2'2 C1' 117.2 245.3
C3' C2' H2'2 H2'1 238.6 122.6
C1' C2' H2'2 H2'1 121.4 237.4
H2'2 C2' C1' N1 277.5 2.8
H2'2 C2' C1' H1' 35.7 123.7
O4' C1' N1 C2' 119.2 118.0
O4' C1' N1 H1' 238.1 239.0
N1 C1' C2' H2'1 27.1 240.1
N1 C1' C2' H2'2 277.5 2.8
C2' C1' N1 H1' 118.9 121.0
C2 N1 C1' C6 180.2 180.0
C1' N1 C2 O2 0.0 360.0
C1' N1 C2 N3 179.5 180.0
C1' N1 C6 C5 180.1 180.0
C1' N1 C6 H6 0.1 360.0
O4' C1' H1' C2' 241.4 242.0
O4' C1' H1' N1 119.2 121.0
H1' C1' C2' H2'1 145.2 1.1
H1' C1' C2' H2'2 35.7 123.7
C2' C1' H1' N1 237.8 239.0
H1' C1' N1 C2 355.9 179.3
H1' C1' N1 C6 175.6 359.3
C2 N1 C1' H1' 355.9 179.3
C1' N1 C2 C6 179.8 180.0
C2 N1 C6 C5 359.8 0.0
C2 N1 C6 H6 179.8 180.0
O2 C2 N1 N3 180.5 180.0
N1 C2 N3 C4 0.5 359.7
N1 C2 N3 HN3 180.5 180.0
C6 N1 C1' H1' 175.6 359.3
C1' N1 C6 C2 180.3 180.0
C6 N1 C2 O2 180.3 180.0
C6 N1 C2 N3 359.7 0.0
C4 C5 C6 N1 0.3 0.2
C5M C5 C6 N1 180.0 180.0
C5 C6 N1 H6 180.0 180.0
O2 C2 N1 C6 180.3 180.0
N1 C2 O2 N3 179.4 180.0
O2 C2 N3 C4 180.0 179.8
O2 C2 N3 HN3 360.0 0.1
N3 C2 N1 C6 359.7 0.0
N1 C2 N3 O2 180.5 180.0
C4 N3 C2 HN3 180.0 179.7
C2 N3 C4 O4 179.8 180.0
C2 N3 C4 C5 359.6 0.5
C2 N3 C4 HN3 180.0 180.3
O4 C4 N3 C5 180.2 179.6
N3 C4 C5 C5M 180.3 179.8
N3 C4 C5 C6 359.9 359.6
C2 N3 HN3 C4 180.0 179.7
HN3 N3 C4 O4 359.8 359.7
HN3 N3 C4 C5 179.6 180.1
O4 C4 N3 HN3 359.8 359.7
N3 C4 O4 C5 179.8 180.4
O4 C4 C5 C5M 0.1 0.2
O4 C4 C5 C6 179.8 180.0
N1 C6 C5 C4 0.3 0.2
C5 C4 N3 HN3 179.6 180.1
N3 C4 C5 O4 180.2 179.6
C5M C5 C4 C6 180.3 180.2
C4 C5 C5M HM51 180.0 359.8
C4 C5 C5M HM52 305.3 119.8
C4 C5 C5M HM53 54.7 239.8
C4 C5 C6 H6 180.4 180.2
N1 C6 C5 C5M 180.0 180.0
C4 C5 C5M C6 179.7 179.8
C5M C5 C6 H6 0.0 0.0
HM51 C5M C5 HM52 234.7 240.0
HM51 C5M C5 HM53 125.3 120.0
HM52 C5M C5 HM53 250.6 240.0
N1 C6 C5 H6 180.0 180.0
C4 C5 C6 C5M 180.3 180.2
C6 C5 C5M HM51 0.3 180.0
C6 C5 C5M HM52 125.7 300.0
C6 C5 C5M HM53 235.1 60.0
HM51 C5M C5 C6 0.3 180.0
C5 C5M HM51 HM52 125.4 120.0
C5 C5M HM51 HM53 234.7 240.0
HM52 C5M HM51 HM53 109.3 120.0
HM52 C5M C5 C6 125.7 300.0
C5 C5M HM52 HM51 227.6 240.0
C5 C5M HM52 HM53 113.9 120.0
HM51 C5M HM52 HM53 246.3 240.0
HM53 C5M C5 C6 235.1 60.0
C5 C5M HM53 HM51 132.4 120.1
C5 C5M HM53 HM52 246.1 240.0
HM51 C5M HM53 HM52 113.8 119.9
N1 C6 H6 C5 180.0 180.0