PDB Chemical Component TTM

Ideal Model

Chemical Description

Name N3-ETHYL-THYMIDINE-5'-MONOPHOSPHATE
Formula C12 H19 N2 O8 P
Formal charge 0
Molecular weight 350.262 g/mol
Component type DNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 42
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3 HO3'
Bond count 43
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 3-ethylthymidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(3-ethyl-5-methyl-2,4-dioxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CCN1C(=O)N(C=C(C)C1=O)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2
SMILES (CACTVS) CCN1C(=O)N(C=C(C)C1=O)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2
Stereo SMILES (OpenEye) CCN1C(=O)C(=CN(C1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O)C
InChI descriptor InChI=1S/C12H19N2O8P/c1-3-13-11(16)7(2)5-14(12(13)17)10-4-8(15)9(22-10)6-21-23(18,19)20/h5,8-10,15H,3-4,6H2,1-2H3,(H2,18,19,20)/t8-,9+,10+/m0/s1
InChIKey descriptor DDXOXFHHQKBFFH-IVZWLZJFSA-N

Status Information

Last modified 2011-06-04
Created 2004-09-13
Release status REL
Model PDB code 1XCI
Processing site PDBJ