PDB Chemical Component TTE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TTE

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.343 1.345
N1 C6 1.359 1.368
N1 C1' 1.393 1.465
C2 O2 1.239 1.216
C2 N3 1.326 1.347
N3 C4 1.352 1.348
N3 HN3 1.021 0.969
C4 O4 1.204 1.218
C4 C5 1.502 1.414
C5 C5M 1.490 1.507
C5 C6 1.337 1.350
C5M H5M1 1.115 1.090
C5M H5M2 1.116 1.090
C5M H5M3 1.115 1.090
C6 H6 1.103 1.080
C1' C2' 1.532 1.541
C1' O4' 1.357 1.437
C1' H1' 1.115 1.090
C2' C3' 1.520 1.548
C2' H2'1 1.114 1.090
C2' H2'2 1.115 1.089
C3' O3' 1.421 1.429
C3' C4' 1.482 1.550
C3' H3' 1.115 1.090
O3' HO'3 0.949 0.967
C4' O4' 1.643 1.445
C4' C5' 1.523 1.530
C4' H4' 1.114 1.090
C5' O5' 1.436 1.427
C5' H5'1 1.115 1.090
C5' H5'2 1.114 1.090
O5' PA 1.632 1.610
PA O1A 1.598 1.481
PA O2A 1.610 1.610
PA O3A 1.619 1.609
O2A HOA2 0.950 0.966
O3A PB 1.628 1.610
PB O1B 1.617 1.480
PB O2B 1.599 1.609
PB CC 1.848 1.823
O2B HOB2 0.949 0.966
CC PG 1.854 1.823
CC HCC1 1.115 1.090
CC HCC2 1.116 1.091
PG O1G 1.620 1.479
PG O2G 1.604 1.610
PG O3G 1.616 1.609
O2G HOG2 0.950 0.967
O3G HOG3 0.950 0.966

Bond Angles for TTE

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 118.3 120.6
C2 N1 C1' 120.8 119.7
N1 C2 O2 119.6 119.6
N1 C2 N3 121.9 120.9
C6 N1 C1' 120.9 119.7
N1 C6 C5 123.2 119.7
N1 C6 H6 119.3 120.1
N1 C1' C2' 113.7 109.8
N1 C1' O4' 113.6 109.9
N1 C1' H1' 102.2 109.8
O2 C2 N3 118.5 119.5
C2 N3 C4 124.2 120.2
C2 N3 HN3 116.9 119.9
C4 N3 HN3 118.9 119.9
N3 C4 O4 123.2 120.3
N3 C4 C5 114.2 119.4
O4 C4 C5 122.6 120.3
C4 C5 C5M 119.7 120.5
C4 C5 C6 118.2 119.1
C5M C5 C6 122.1 120.4
C5 C5M H5M1 119.7 109.5
C5 C5M H5M2 108.5 109.5
C5 C5M H5M3 108.5 109.5
C5 C6 H6 117.5 120.2
H5M1 C5M H5M2 108.5 109.4
H5M1 C5M H5M3 108.6 109.4
H5M2 C5M H5M3 101.4 109.5
C2' C1' O4' 105.4 107.4
C2' C1' H1' 111.0 109.9
C1' C2' C3' 103.5 104.2
C1' C2' H2'1 114.5 110.5
C1' C2' H2'2 114.5 110.5
O4' C1' H1' 111.1 109.9
C1' O4' C4' 113.6 106.9
C3' C2' H2'1 114.5 110.4
C3' C2' H2'2 114.5 110.6
C2' C3' O3' 109.2 110.9
C2' C3' C4' 110.1 102.1
C2' C3' H3' 108.9 110.9
H2'1 C2' H2'2 96.0 110.6
O3' C3' C4' 108.6 111.0
O3' C3' H3' 110.4 110.8
C3' O3' HO'3 109.2 106.8
C4' C3' H3' 109.6 110.8
C3' C4' O4' 97.8 103.6
C3' C4' C5' 114.2 110.7
C3' C4' H4' 114.9 110.6
O4' C4' C5' 111.7 110.8
O4' C4' H4' 117.2 110.5
C5' C4' H4' 101.7 110.5
C4' C5' O5' 111.6 109.5
C4' C5' H5'1 111.4 109.5
C4' C5' H5'2 111.4 109.4
O5' C5' H5'1 111.4 109.5
O5' C5' H5'2 111.4 109.5
C5' O5' PA 123.8 106.8
H5'1 C5' H5'2 99.0 109.5
O5' PA O1A 113.5 109.4
O5' PA O2A 104.3 109.5
O5' PA O3A 102.9 109.5
O1A PA O2A 118.4 109.5
O1A PA O3A 111.5 109.5
O2A PA O3A 104.7 109.5
PA O2A HOA2 104.4 106.8
PA O3A PB 133.6 106.8
O3A PB O1B 101.5 109.4
O3A PB O2B 104.6 109.5
O3A PB CC 100.9 109.5
O1B PB O2B 106.2 109.5
O1B PB CC 102.4 109.5
O2B PB CC 136.5 109.5
PB O2B HOB2 104.6 106.9
PB CC PG 108.5 109.5
PB CC HCC1 112.6 109.4
PB CC HCC2 112.6 109.4
PG CC HCC1 112.6 109.5
PG CC HCC2 112.6 109.5
CC PG O1G 102.0 109.5
CC PG O2G 105.5 109.5
CC PG O3G 101.4 109.5
HCC1 CC HCC2 97.8 109.5
O1G PG O2G 104.6 109.4
O1G PG O3G 100.9 109.5
O2G PG O3G 137.8 109.5
PG O2G HOG2 105.5 106.8
PG O3G HOG3 101.4 106.9

Torsion Angles for TTE

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 C1' 179.6 179.9
C2 N1 C6 C5 0.0 0.0
C2 N1 C6 H6 180.0 180.0
C2 N1 C1' C2' 129.4 300.3
C2 N1 C1' O4' 249.9 58.3
C2 N1 C1' H1' 9.6 179.3
O2 C2 N1 N3 180.0 180.1
N1 C2 N3 C4 0.2 359.8
N1 C2 N3 HN3 180.1 180.0
C2 N1 C6 C1' 180.4 180.1
C6 N1 C2 O2 180.0 180.0
C6 N1 C2 N3 0.0 359.9
C6 N1 C1' C2' 309.8 120.3
C6 N1 C1' O4' 70.3 238.3
C6 N1 C1' H1' 190.1 359.4
C4 C5 C6 N1 359.8 0.3
C5M C5 C6 N1 179.7 180.0
C5 C6 N1 H6 180.0 180.0
C2 N1 C1' C6 179.6 179.9
C1' N1 C2 O2 0.4 0.1
C1' N1 C2 N3 180.4 180.0
C1' N1 C6 C5 179.6 180.0
C1' N1 C6 H6 359.6 360.0
C2' C1' N1 O4' 239.5 242.0
C2' C1' N1 H1' 119.7 121.0
N1 C1' C2' C3' 96.2 121.5
N1 C1' C2' H2'1 221.5 240.1
N1 C1' C2' H2'2 331.0 2.8
O4' C1' N1 H1' 240.2 239.0
N1 C1' O4' C4' 252.1 214.2
O2 C2 N1 C6 180.0 180.0
O2 C2 N1 C1' 0.4 0.1
N1 C2 O2 N3 180.0 179.9
O2 C2 N3 C4 180.2 179.8
O2 C2 N3 HN3 0.1 359.9
N3 C2 N1 C6 0.0 359.9
N3 C2 N1 C1' 180.4 180.0
N1 C2 N3 O2 180.0 180.1
C4 N3 C2 HN3 180.0 179.8
C2 N3 C4 O4 179.7 180.0
C2 N3 C4 C5 359.7 0.4
C2 N3 C4 HN3 180.0 180.2
O4 C4 N3 C5 180.0 179.5
N3 C4 C5 C5M 180.4 179.8
N3 C4 C5 C6 0.3 359.5
C2 N3 HN3 C4 180.0 179.8
HN3 N3 C4 O4 359.7 359.8
HN3 N3 C4 C5 179.7 180.3
O4 C4 N3 HN3 359.7 359.8
N3 C4 O4 C5 180.0 180.5
O4 C4 C5 C5M 0.4 0.3
O4 C4 C5 C6 180.4 180.0
N1 C6 C5 C4 359.8 0.3
C5 C4 N3 HN3 179.7 180.3
N3 C4 C5 O4 180.0 179.5
C5M C5 C4 C6 180.1 180.3
C4 C5 C5M H5M1 180.0 359.7
C4 C5 C5M H5M2 305.3 119.7
C4 C5 C5M H5M3 54.7 239.7
C4 C5 C6 H6 179.8 180.2
N1 C6 C5 C5M 179.7 180.0
C4 C5 C5M C6 179.9 179.7
C5M C5 C6 H6 359.7 359.9
H5M1 C5M C5 H5M2 234.7 240.0
H5M1 C5M C5 H5M3 125.3 120.0
H5M2 C5M C5 H5M3 250.6 240.0
C5 C6 N1 C1' 179.6 180.0
N1 C6 C5 H6 180.0 180.0
C4 C5 C6 C5M 180.1 180.3
C6 C5 C5M H5M1 0.1 180.0
C6 C5 C5M H5M2 125.4 300.0
C6 C5 C5M H5M3 234.8 60.0
H5M1 C5M C5 C6 0.1 180.0
C5 C5M H5M1 H5M2 125.3 120.0
C5 C5M H5M1 H5M3 234.7 240.0
H5M2 C5M H5M1 H5M3 109.4 120.0
H5M2 C5M C5 C6 125.4 300.0
C5 C5M H5M2 H5M1 228.4 240.0
C5 C5M H5M2 H5M3 114.2 120.1
H5M1 C5M H5M2 H5M3 245.8 240.0
H5M3 C5M C5 C6 234.8 60.0
C5 C5M H5M3 H5M1 131.6 120.0
C5 C5M H5M3 H5M2 245.8 239.9
H5M1 C5M H5M3 H5M2 114.2 120.0
H6 C6 N1 C1' 359.6 360.0
N1 C6 H6 C5 180.0 180.0
N1 C1' C2' O4' 125.1 119.5
N1 C1' C2' H1' 245.4 239.1
O4' C1' C2' H1' 120.4 119.5
C2' C1' O4' C4' 17.2 333.7
C3' C2' C1' H2'1 234.7 241.4
C3' C2' C1' H2'2 125.2 118.8
C1' C2' C3' O3' 150.9 139.1
C1' C2' C3' C4' 31.7 20.8
C1' C2' C3' H3' 271.6 262.7
H2'1 C2' C1' H2'2 250.5 237.3
N1 C1' O4' C2' 234.9 240.5
N1 C1' O4' H1' 114.6 121.0
C2' C1' O4' H1' 239.7 240.5
O4' C1' C2' C3' 331.2 2.0
O4' C1' C2' H2'1 96.5 120.6
O4' C1' C2' H2'2 205.9 243.2
C3' C4' O4' C1' 1.7 39.8
C1' O4' C4' C5' 121.7 158.6
C1' O4' C4' H4' 238.5 281.4
N1 C1' H1' C2' 121.6 120.9
N1 C1' H1' O4' 238.5 239.0
C2' C1' H1' O4' 116.9 118.0
H1' C1' C2' C3' 210.8 242.5
H1' C1' C2' H2'1 336.1 1.0
H1' C1' C2' H2'2 85.5 123.7
H1' C1' O4' C4' 137.5 93.2
C3' C2' C1' O4' 331.2 2.0
C3' C2' C1' H1' 210.8 242.5
C1' C2' C3' H2'1 125.3 118.6
C1' C2' C3' H2'2 234.8 241.3
H2'1 C2' C3' H2'2 109.5 122.7
O3' C3' C2' C4' 119.2 118.3
O3' C3' C2' H3' 239.3 236.4
C2' C3' O3' HO'3 180.0 61.4
C4' C3' C2' H3' 120.1 118.1
C2' C3' C4' O4' 339.5 323.1
C2' C3' C4' C5' 221.4 204.3
C2' C3' C4' H4' 104.4 81.5
H2'1 C2' C1' O4' 96.5 120.6
H2'1 C2' C1' H1' 336.1 1.0
C1' C2' H2'1 C3' 240.7 245.3
C1' C2' H2'1 H2'2 120.4 122.6
C3' C2' H2'1 H2'2 239.6 237.3
H2'1 C2' C3' O3' 25.6 20.5
H2'1 C2' C3' C4' 266.4 262.2
H2'1 C2' C3' H3' 146.3 144.1
H2'2 C2' C1' O4' 205.9 243.2
H2'2 C2' C1' H1' 85.5 123.7
C1' C2' H2'2 C3' 119.2 114.8
C1' C2' H2'2 H2'1 239.6 237.4
C3' C2' H2'2 H2'1 120.4 122.6
H2'2 C2' C3' O3' 276.1 257.8
H2'2 C2' C3' C4' 157.0 139.5
H2'2 C2' C3' H3' 36.8 21.4
O3' C3' C2' H2'1 25.6 20.5
O3' C3' C2' H2'2 276.1 257.8
C2' C3' O3' C4' 239.9 247.2
C2' C3' O3' H3' 119.7 123.6
C4' C3' O3' H3' 239.8 236.4
O3' C3' C4' O4' 219.9 204.9
O3' C3' C4' C5' 101.8 86.0
O3' C3' C4' H4' 344.8 323.3
C1' O4' C4' C3' 1.7 39.8
C4' C3' C2' H2'1 266.4 262.2
C4' C3' C2' H2'2 157.0 139.5
C2' C3' C4' O3' 119.6 118.3
C2' C3' C4' H3' 240.3 241.9
O3' C3' C4' H3' 120.7 123.6
C4' C3' O3' HO'3 300.1 174.2
O4' C4' C3' C5' 118.1 118.8
O4' C4' C3' H4' 235.1 241.6
C5' C4' C3' H4' 117.0 122.7
C3' C4' C5' O5' 11.6 180.0
C3' C4' C5' H5'1 136.8 300.1
C3' C4' C5' H5'2 246.4 60.0
H3' C3' C2' H2'1 146.3 144.1
H3' C3' C2' H2'2 36.8 21.4
C2' C3' H3' O3' 240.1 236.4
C2' C3' H3' C4' 120.5 112.7
O3' C3' H3' C4' 240.4 236.3
H3' C3' O3' HO'3 60.3 297.8
H3' C3' C4' O4' 99.2 81.3
H3' C3' C4' C5' 341.1 322.4
H3' C3' C4' H4' 224.1 199.7
HO'3 O3' C3' C4' 300.1 174.2
HO'3 O3' C3' H3' 60.3 297.8
C4' O4' C1' H1' 137.5 93.2
O4' C4' C3' H3' 99.2 81.3
C3' C4' O4' C5' 240.0 241.3
C3' C4' O4' H4' 123.2 118.5
C5' C4' O4' H4' 243.2 237.2
O4' C4' C5' O5' 261.8 65.6
O4' C4' C5' H5'1 27.0 185.7
O4' C4' C5' H5'2 136.6 305.7
C5' C4' C3' H3' 341.1 322.4
C3' C4' C5' O4' 109.8 114.4
C3' C4' C5' H4' 235.7 237.2
O4' C4' C5' H4' 125.8 122.8
O5' C5' C4' H5'1 234.8 239.9
O5' C5' C4' H5'2 125.2 120.0
C4' C5' O5' PA 223.6 180.0
H5'1 C5' C4' H5'2 250.4 240.0
H4' C4' C3' H3' 224.1 199.7
C3' C4' H4' O4' 246.1 245.9
C3' C4' H4' C5' 123.9 122.9
O4' C4' H4' C5' 237.9 237.0
H4' C4' C5' O5' 136.0 302.8
H4' C4' C5' H5'1 261.2 62.9
H4' C4' C5' H5'2 10.7 182.9
O5' C5' C4' H4' 136.0 302.8
C4' C5' O5' H5'1 125.2 120.1
C4' C5' O5' H5'2 234.8 240.1
H5'1 C5' O5' H5'2 109.5 120.0
C5' O5' PA O1A 357.8 60.0
C5' O5' PA O2A 227.5 300.1
C5' O5' PA O3A 118.4 180.0
H5'1 C5' C4' H4' 261.2 62.9
C4' C5' H5'1 O5' 234.7 239.9
C4' C5' H5'1 H5'2 117.4 119.9
O5' C5' H5'1 H5'2 242.7 240.0
H5'1 C5' O5' PA 98.4 59.9
H5'2 C5' C4' H4' 10.7 182.9
C4' C5' H5'2 O5' 125.3 120.0
C4' C5' H5'2 H5'1 242.6 240.0
O5' C5' H5'2 H5'1 117.3 120.0
H5'2 C5' O5' PA 348.9 299.9
PA O5' C5' H5'1 98.4 59.9
PA O5' C5' H5'2 348.9 299.9
O1A PA O5' O2A 130.3 120.0
O1A PA O5' O3A 239.4 240.0
O2A PA O5' O3A 109.1 120.1
O5' PA O2A HOA2 180.0 300.0
O5' PA O3A PB 275.3 180.0
O5' PA O1A O2A 237.2 240.0
O5' PA O1A O3A 115.6 120.0
O2A PA O1A O3A 238.4 240.0
O1A PA O2A HOA2 52.7 180.0
O1A PA O3A PB 37.3 299.9
O5' PA O2A O1A 127.3 119.9
O5' PA O2A O3A 252.2 239.9
O1A PA O2A O3A 125.0 120.0
O2A PA O3A PB 166.5 59.9
O5' PA O3A O1A 238.1 240.0
O5' PA O3A O2A 108.8 120.0
O1A PA O3A O2A 230.8 240.0
O3A PA O2A HOA2 287.8 60.0
PA O3A PB O1B 115.8 60.0
PA O3A PB O2B 5.5 300.0
PA O3A PB CC 221.0 180.0
HOA2 O2A PA O3A 287.8 60.0
O1B PB O3A O2B 110.3 120.0
O1B PB O3A CC 254.8 240.0
O2B PB O3A CC 144.4 120.0
O3A PB O2B HOB2 180.0 299.9
O3A PB CC PG 64.0 180.0
O3A PB CC HCC1 189.3 300.1
O3A PB CC HCC2 298.7 60.0
O3A PB O1B O2B 250.9 240.0
O3A PB O1B CC 104.1 120.0
O2B PB O1B CC 213.2 240.0
O1B PB O2B HOB2 73.2 180.0
O1B PB CC PG 168.4 300.0
O1B PB CC HCC1 293.7 60.0
O1B PB CC HCC2 43.2 180.0
O3A PB O2B O1B 106.8 120.0
O3A PB O2B CC 236.0 240.0
O1B PB O2B CC 129.1 120.0
O2B PB CC PG 298.7 60.0
O2B PB CC HCC1 64.0 180.0
O2B PB CC HCC2 173.5 300.0
O3A PB CC O1B 255.5 240.1
O3A PB CC O2B 125.2 120.0
O1B PB CC O2B 229.7 240.0
CC PB O2B HOB2 304.0 60.0
PG CC PB HCC1 234.7 240.0
PG CC PB HCC2 125.3 120.0
PB CC PG O1G 328.0 60.1
PB CC PG O2G 77.0 180.0
PB CC PG O3G 224.1 300.0
HCC1 CC PB HCC2 250.6 240.0
HOB2 O2B PB CC 304.0 60.0
PB CC PG HCC1 125.3 120.0
PB CC PG HCC2 234.7 240.1
HCC1 CC PG HCC2 109.4 120.1
O1G PG CC O2G 250.9 240.1
O1G PG CC O3G 103.9 120.1
O2G PG CC O3G 212.9 240.0
CC PG O2G HOG2 180.0 180.0
CC PG O3G HOG3 180.0 300.0
PB CC HCC1 PG 236.9 240.0
PB CC HCC1 HCC2 118.5 119.9
PG CC HCC1 HCC2 241.5 239.9
HCC1 CC PG O1G 202.7 300.1
HCC1 CC PG O2G 311.7 60.0
HCC1 CC PG O3G 98.8 180.0
PB CC HCC2 PG 123.0 120.0
PB CC HCC2 HCC1 241.5 240.1
PG CC HCC2 HCC1 118.5 120.1
HCC2 CC PG O1G 93.3 180.0
HCC2 CC PG O2G 202.3 299.9
HCC2 CC PG O3G 349.4 59.9
O1G PG CC HCC1 202.7 300.1
O1G PG CC HCC2 93.3 180.0
CC PG O1G O2G 109.8 120.0
CC PG O1G O3G 255.8 239.9
O2G PG O1G O3G 146.0 120.0
O1G PG O2G HOG2 287.2 299.9
O1G PG O3G HOG3 75.2 180.0
O2G PG CC HCC1 311.7 60.0
O2G PG CC HCC2 202.3 299.9
CC PG O2G O1G 252.8 240.0
CC PG O2G O3G 127.6 120.0
O1G PG O2G O3G 234.8 240.0
O2G PG O3G HOG3 308.8 60.0
O3G PG CC HCC1 98.8 180.0
O3G PG CC HCC2 349.4 59.9
CC PG O3G O1G 104.8 120.0
CC PG O3G O2G 231.2 240.0
O1G PG O3G O2G 126.4 120.0
O3G PG O2G HOG2 52.4 60.0
HOG2 O2G PG O3G 52.4 60.0