PDB Chemical Component TSP

Ideal Model

Chemical Description

Name 3'-THIO-THYMIDINE-5'-PHOSPHATE
Formula C10 H15 N2 O7 P S
Formal charge 0
Molecular weight 338.274 g/mol
Component type DNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 36
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP3
Bond count 37
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 3'-thiothymidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-sulfanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@H]2C[C@H](S)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2C[CH](S)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)S
InChI descriptor InChI=1S/C10H15N2O7PS/c1-5-3-12(10(14)11-9(5)13)8-2-7(21)6(19-8)4-18-20(15,16)17/h3,6-8,21H,2,4H2,1H3,(H,11,13,14)(H2,15,16,17)/t6-,7+,8-/m1/s1
InChIKey descriptor BORVFKJZAOEGOO-GJMOJQLCSA-N

Status Information

Last modified 2019-09-04
Created 1999-07-08
Release status REL
Model PDB code 1EO3
Processing site EBI