PDB Chemical Component TSB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TSB

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CG2 CB 1.530 1.530
CG2 HG21 1.115 1.089
CG2 HG22 1.115 1.091
CG2 HG23 1.114 1.090
N CA 1.450 1.469
N HN11 1.020 1.009
N HN12 1.020 1.009
CA CB 1.542 1.530
CA C 1.492 1.507
CA HA 1.115 1.089
CB OG1 1.429 1.428
CB HB 1.116 1.090
OG1 HG1 0.950 0.967
C O 1.215 1.212
C N8 1.309 1.347
N8 S1 1.594 1.655
N8 HN8 1.020 0.969
S1 O1S 1.480 1.421
S1 O2S 1.488 1.421
S1 O5' 1.602 1.523
O5' C5' 1.434 1.428
C5' C4' 1.519 1.529
C5' H5'1 1.115 1.090
C5' H5'2 1.116 1.090
C4' O4' 1.452 1.438
C4' C3' 1.515 1.540
C4' H4' 1.115 1.090
O4' C1' 1.420 1.444
C3' O3' 1.431 1.429
C3' C2' 1.526 1.552
C3' H3' 1.114 1.090
O3' HO3' 0.950 0.966
C2' O2' 1.412 1.429
C2' C1' 1.534 1.549
C2' H2' 1.115 1.090
O2' HO2' 0.950 0.967
C1' N9 1.467 1.464
C1' H1' 1.116 1.090
N9 C8 1.377 1.363
N9 C4 1.378 1.373
C8 N7 1.311 1.302
C8 H8 1.102 1.080
N7 C5 1.389 1.354
C5 C6 1.406 1.406
C5 C4 1.383 1.406
C6 N6 1.337 1.383
C6 N1 1.353 1.329
N6 HN61 1.020 0.971
N6 HN62 1.019 0.970
N1 C2 1.335 1.320
C2 N3 1.334 1.316
C2 H2 1.104 1.079
N3 C4 1.344 1.328

Bond Angles for TSB

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CB CG2 HG21 110.7 109.5
CB CG2 HG22 111.8 109.5
CB CG2 HG23 111.7 109.5
CG2 CB CA 110.7 109.5
CG2 CB OG1 108.2 109.5
CG2 CB HB 109.7 109.5
HG21 CG2 HG22 111.7 109.5
HG21 CG2 HG23 111.8 109.5
HG22 CG2 HG23 98.7 109.4
CA N HN11 111.9 106.6
CA N HN12 111.3 106.8
N CA CB 111.9 109.5
N CA C 106.7 109.5
N CA HA 109.4 109.5
HN11 N HN12 111.4 106.7
CB CA C 108.4 109.5
CB CA HA 107.7 109.5
CA CB OG1 110.0 109.5
CA CB HB 107.9 109.5
C CA HA 112.8 109.4
CA C O 120.3 120.0
CA C N8 116.2 120.0
OG1 CB HB 110.4 109.5
CB OG1 HG1 108.2 106.8
O C N8 123.5 120.0
C N8 S1 120.9 120.0
C N8 HN8 109.7 120.0
S1 N8 HN8 129.4 120.0
N8 S1 O1S 108.0 105.8
N8 S1 O2S 106.9 105.8
N8 S1 O5' 105.4 107.4
O1S S1 O2S 118.8 125.4
O1S S1 O5' 107.4 105.7
O2S S1 O5' 109.5 105.8
S1 O5' C5' 120.8 106.8
O5' C5' C4' 110.8 109.5
O5' C5' H5'1 111.8 109.5
O5' C5' H5'2 111.7 109.5
C4' C5' H5'1 111.7 109.5
C4' C5' H5'2 111.7 109.4
C5' C4' O4' 109.2 109.8
C5' C4' C3' 115.6 109.9
C5' C4' H4' 103.8 109.9
H5'1 C5' H5'2 98.7 109.5
O4' C4' C3' 103.6 107.4
O4' C4' H4' 115.7 109.9
C4' O4' C1' 109.6 106.9
C3' C4' H4' 109.4 109.9
C4' C3' O3' 111.0 110.8
C4' C3' C2' 103.0 104.0
C4' C3' H3' 113.6 110.5
O4' C1' C2' 107.7 103.5
O4' C1' N9 109.4 110.6
O4' C1' H1' 111.7 110.6
O3' C3' C2' 112.0 110.5
O3' C3' H3' 104.9 110.4
C3' O3' HO3' 111.0 106.8
C2' C3' H3' 112.6 110.5
C3' C2' O2' 113.2 110.8
C3' C2' C1' 102.1 102.1
C3' C2' H2' 112.6 111.0
O2' C2' C1' 111.2 110.9
O2' C2' H2' 103.6 110.8
C2' O2' HO2' 113.2 106.8
C1' C2' H2' 114.5 110.9
C2' C1' N9 112.4 110.7
C2' C1' H1' 108.7 110.6
N9 C1' H1' 107.0 110.6
C1' N9 C8 128.3 126.3
C1' N9 C4 125.9 126.3
C8 N9 C4 105.8 107.5
N9 C8 N7 113.8 110.0
N9 C8 H8 125.2 125.0
N9 C4 C5 105.6 105.9
N9 C4 N3 127.6 135.0
N7 C8 H8 121.0 125.0
C8 N7 C5 103.7 109.5
N7 C5 C6 132.1 134.7
N7 C5 C4 111.1 107.2
C6 C5 C4 116.8 118.1
C5 C6 N6 123.5 120.7
C5 C6 N1 117.9 118.4
C5 C4 N3 126.8 119.1
N6 C6 N1 118.6 120.8
C6 N6 HN61 123.5 120.0
C6 N6 HN62 107.2 120.1
C6 N1 C2 118.5 121.2
HN61 N6 HN62 107.3 119.9
N1 C2 N3 129.2 122.4
N1 C2 H2 115.5 118.8
N3 C2 H2 115.3 118.8
C2 N3 C4 110.8 120.7

Torsion Angles for TSB

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HG21 CG2 CB HG22 234.8 240.0
HG21 CG2 CB HG23 125.2 120.1
HG22 CG2 CB HG23 250.5 240.1
N CA CB CG2 191.1 300.0
CG2 CB CA C 73.8 180.0
CG2 CB CA HA 311.4 60.0
CA CB CG2 OG1 120.6 120.0
CA CB CG2 HB 241.0 240.0
OG1 CB CG2 HB 120.4 120.0
CG2 CB OG1 HG1 180.0 60.0
CB CG2 HG21 HG22 125.3 120.0
CB CG2 HG21 HG23 234.8 240.0
HG21 CG2 CB CA 180.0 300.0
HG21 CG2 CB OG1 59.4 180.0
HG21 CG2 CB HB 299.0 60.0
HG22 CG2 HG21 HG23 109.5 119.9
CB CG2 HG22 HG21 235.4 239.9
CB CG2 HG22 HG23 117.7 120.0
HG22 CG2 CB CA 305.2 60.0
HG22 CG2 CB OG1 184.7 300.0
HG22 CG2 CB HB 64.2 180.0
HG21 CG2 HG22 HG23 242.3 240.0
CB CG2 HG23 HG21 124.6 120.1
CB CG2 HG23 HG22 242.3 240.0
HG23 CG2 CB CA 54.8 180.0
HG23 CG2 CB OG1 294.2 59.9
HG23 CG2 CB HB 173.7 299.9
HG21 CG2 HG23 HG22 117.7 120.0
CG2 CB CA N 191.1 300.0
HN11 N CA HN12 125.3 246.3
CB CA N C 241.6 240.0
CB CA N HA 119.2 120.0
N CA CB OG1 310.6 60.0
N CA CB HB 71.1 180.0
C CA N HA 237.6 240.0
N CA C O 324.5 330.0
N CA C N8 144.6 150.0
CA N HN11 HN12 234.7 113.8
HN11 N CA CB 180.0 300.0
HN11 N CA C 298.4 60.0
HN11 N CA HA 60.8 180.0
CA N HN12 HN11 125.6 246.3
HN12 N CA CB 54.7 53.7
HN12 N CA C 173.1 173.7
HN12 N CA HA 295.5 293.7
CA CB CG2 HG21 180.0 300.0
CA CB CG2 HG22 305.2 60.0
CA CB CG2 HG23 54.8 180.0
CG2 CB CA OG1 240.5 240.0
CG2 CB CA HB 120.1 120.0
CB CA N HN11 180.0 300.0
CB CA N HN12 54.7 53.7
N CA CB C 117.4 120.1
N CA CB HA 239.7 240.0
C CA CB HA 122.4 119.9
CB CA C O 85.1 90.0
CB CA C N8 265.2 270.0
OG1 CB CA HB 239.6 240.0
CA CB OG1 HG1 59.0 300.0
C CA N HN11 298.4 60.0
C CA N HN12 173.1 173.7
N CA C CB 239.3 240.0
N CA C HA 120.2 120.0
CB CA C HA 240.8 240.0
C CA CB OG1 193.2 299.9
C CA CB HB 313.7 60.0
O C CA N8 179.9 180.0
CA C N8 S1 180.0 180.0
CA C N8 HN8 0.1 360.0
HA CA N HN11 60.8 180.0
HA CA N HN12 295.5 293.7
N CA HA CB 121.8 120.0
N CA HA C 241.4 240.0
CB CA HA C 119.6 120.0
HA CA CB OG1 70.9 180.0
HA CA CB HB 191.3 300.0
HA CA C O 204.3 210.0
HA CA C N8 24.4 30.0
OG1 CB CG2 HG21 59.4 180.0
OG1 CB CG2 HG22 184.7 300.0
OG1 CB CG2 HG23 294.2 59.9
CG2 CB OG1 CA 121.0 120.0
CG2 CB OG1 HB 240.0 240.0
OG1 CB CA C 193.2 299.9
OG1 CB CA HA 70.9 180.0
CA CB OG1 HB 119.0 120.0
HB CB CG2 HG21 299.0 60.0
HB CB CG2 HG22 64.2 180.0
HB CB CG2 HG23 173.7 299.9
CG2 CB HB CA 239.3 240.0
CG2 CB HB OG1 119.1 120.0
HB CB CA C 313.7 60.0
HB CB CA HA 191.3 300.0
CA CB HB OG1 239.8 240.0
HB CB OG1 HG1 300.1 180.0
HG1 OG1 CB HB 300.1 180.0
O C CA HA 204.3 210.0
CA C O N8 180.1 180.0
O C N8 S1 0.1 0.0
O C N8 HN8 180.1 180.0
N8 C CA HA 24.4 30.0
CA C N8 O 179.9 180.0
S1 N8 C HN8 180.0 180.0
C N8 S1 O1S 52.9 172.6
C N8 S1 O2S 181.9 307.4
C N8 S1 O5' 298.3 60.0
C N8 S1 HN8 180.1 180.0
O1S S1 N8 O2S 231.0 225.1
O1S S1 N8 O5' 114.5 112.6
O2S S1 N8 O5' 243.5 247.4
N8 S1 O5' C5' 305.8 90.0
C N8 HN8 S1 179.9 180.0
HN8 N8 S1 O1S 232.8 352.6
HN8 N8 S1 O2S 1.8 127.4
HN8 N8 S1 O5' 118.3 240.0
O1S S1 N8 HN8 232.8 352.6
N8 S1 O1S O2S 121.9 123.2
N8 S1 O1S O5' 246.8 246.3
O2S S1 O1S O5' 124.9 123.1
O1S S1 O5' C5' 190.8 337.4
O2S S1 N8 HN8 1.8 127.4
N8 S1 O2S O1S 237.5 236.8
N8 S1 O2S O5' 113.7 113.7
O1S S1 O2S O5' 236.2 236.9
O2S S1 O5' C5' 60.5 202.6
O5' S1 N8 HN8 118.3 240.0
N8 S1 O5' O1S 115.0 112.6
N8 S1 O5' O2S 245.3 247.4
O1S S1 O5' O2S 130.3 134.8
S1 O5' C5' C4' 231.6 180.0
S1 O5' C5' H5'1 356.8 300.0
S1 O5' C5' H5'2 106.3 60.1
C4' C5' O5' H5'1 234.7 240.0
C4' C5' O5' H5'2 125.2 119.9
O5' C5' C4' O4' 301.8 61.7
O5' C5' C4' C3' 58.1 179.7
O5' C5' C4' H4' 177.9 300.7
H5'1 C5' O5' H5'2 250.5 239.9
O5' C5' C4' H5'1 125.3 120.0
O5' C5' C4' H5'2 234.8 240.0
H5'1 C5' C4' H5'2 109.4 120.0
O4' C4' C5' C3' 243.7 242.0
O4' C4' C5' H4' 123.9 121.0
C5' C4' O4' C1' 150.5 146.0
C3' C4' C5' H4' 240.2 239.0
C5' C4' C3' O3' 83.5 119.9
C5' C4' C3' C2' 203.5 238.6
C5' C4' C3' H3' 325.5 357.2
O5' C5' H5'1 C4' 235.2 240.0
O5' C5' H5'1 H5'2 117.6 120.0
C4' C5' H5'1 H5'2 242.4 240.1
H5'1 C5' C4' O4' 176.5 301.7
H5'1 C5' C4' C3' 292.8 59.7
H5'1 C5' C4' H4' 52.6 180.7
O5' C5' H5'2 C4' 124.7 120.0
O5' C5' H5'2 H5'1 242.3 239.9
C4' C5' H5'2 H5'1 117.6 120.0
H5'2 C5' C4' O4' 67.0 181.7
H5'2 C5' C4' C3' 183.3 299.7
H5'2 C5' C4' H4' 303.1 60.7
O4' C4' C5' H5'1 176.5 301.7
O4' C4' C5' H5'2 67.0 181.7
C5' C4' O4' C3' 123.7 119.5
C5' C4' O4' H4' 243.4 239.0
C3' C4' O4' H4' 119.7 119.5
O4' C4' C3' O3' 202.9 239.3
O4' C4' C3' C2' 322.9 358.1
O4' C4' C3' H3' 84.9 116.6
C4' O4' C1' C2' 354.6 319.9
C4' O4' C1' N9 232.2 201.3
C4' O4' C1' H1' 114.0 78.4
C3' C4' C5' H5'1 292.8 59.7
C3' C4' C5' H5'2 183.3 299.7
C5' C4' C3' O4' 240.6 240.5
C5' C4' C3' H4' 116.7 121.0
O4' C4' C3' H4' 236.1 240.5
C3' C4' O4' C1' 26.7 26.4
O3' C3' C4' C2' 240.0 241.3
O3' C3' C4' H3' 117.9 122.7
C4' C3' O3' HO3' 180.0 176.2
C2' C3' C4' H3' 237.9 241.5
C4' C3' C2' O2' 273.6 220.8
C4' C3' C2' C1' 33.2 339.0
C4' C3' C2' H2' 156.4 97.2
H4' C4' C5' H5'1 52.6 180.7
H4' C4' C5' H5'2 303.1 60.7
C5' C4' H4' O4' 119.6 121.0
C5' C4' H4' C3' 236.1 238.9
O4' C4' H4' C3' 116.5 118.0
H4' C4' O4' C1' 267.0 267.0
H4' C4' C3' O3' 326.8 358.8
H4' C4' C3' C2' 86.8 117.6
H4' C4' C3' H3' 208.9 236.1
C1' O4' C4' C3' 26.7 26.4
C1' O4' C4' H4' 267.0 267.0
C3' C2' C1' O4' 342.1 37.1
O2' C2' C1' O4' 103.1 155.2
O4' C1' C2' H2' 220.2 278.8
C2' C1' O4' N9 122.5 118.6
C2' C1' O4' H1' 240.7 241.5
N9 C1' O4' H1' 118.2 122.9
O4' C1' N9 C8 45.6 28.5
O4' C1' N9 C4 223.9 208.3
O3' C3' C4' H4' 326.8 358.8
C4' C3' O3' C2' 114.5 114.8
C4' C3' O3' H3' 236.9 237.3
C2' C3' O3' H3' 122.4 122.5
O3' C3' C2' O2' 32.9 339.8
O3' C3' C2' C1' 152.5 98.0
O3' C3' C2' H2' 275.7 216.2
C2' C3' C4' H4' 86.8 117.6
C4' C3' C2' O3' 240.7 241.0
C4' C3' C2' H3' 122.7 118.6
O4' C1' C2' C3' 342.1 37.1
O3' C3' C2' H3' 242.0 237.5
C2' C3' O3' HO3' 65.5 61.4
O2' C2' C3' C1' 240.4 241.8
O2' C2' C3' H2' 117.1 123.6
C3' C2' O2' HO2' 179.9 292.7
C1' C2' C3' H2' 236.8 241.8
C3' C2' C1' N9 102.7 155.7
C3' C2' C1' H1' 220.9 278.6
H3' C3' C4' H4' 208.9 236.1
C4' C3' H3' O3' 121.4 122.9
C4' C3' H3' C2' 243.4 245.4
O3' C3' H3' C2' 122.0 122.5
H3' C3' O3' HO3' 303.1 298.9
H3' C3' C2' O2' 150.8 102.2
H3' C3' C2' C1' 270.5 220.4
H3' C3' C2' H2' 33.7 338.6
HO3' O3' C3' C2' 65.5 61.4
HO3' O3' C3' H3' 303.1 298.9
O4' C1' C2' O2' 103.1 155.2
O2' C2' C3' H3' 150.8 102.2
C3' C2' O2' C1' 114.2 112.7
C3' C2' O2' H2' 237.7 236.3
C1' C2' O2' H2' 123.5 123.6
O2' C2' C1' N9 223.7 273.8
O2' C2' C1' H1' 341.9 36.7
O4' C1' C2' N9 239.4 241.4
O4' C1' C2' H1' 121.2 118.5
C1' C2' C3' H3' 270.5 220.4
C3' C2' C1' O2' 239.0 241.9
C3' C2' C1' H2' 121.9 118.3
O2' C2' C1' H2' 242.9 236.4
C1' C2' O2' HO2' 65.7 180.0
N9 C1' C2' H1' 241.8 237.1
C2' C1' N9 C8 286.0 274.3
C2' C1' N9 C4 104.2 94.1
H2' C2' C3' H3' 33.7 338.6
C3' C2' H2' O2' 122.7 123.6
C3' C2' H2' C1' 244.0 247.3
O2' C2' H2' C1' 121.3 123.7
H2' C2' O2' HO2' 302.2 56.3
H2' C2' C1' N9 340.8 37.4
H2' C2' C1' H1' 99.0 160.3
HO2' O2' C2' C1' 65.7 180.0
HO2' O2' C2' H2' 302.2 56.3
O4' C1' N9 C2' 119.7 114.2
O4' C1' N9 H1' 238.9 237.1
N9 C1' C2' H2' 340.8 37.4
C2' C1' N9 H1' 119.2 122.9
C8 N9 C1' C4 181.8 180.2
C1' N9 C8 N7 177.2 180.0
C1' N9 C8 H8 357.2 0.1
C1' N9 C4 C5 182.6 179.8
C1' N9 C4 N3 1.7 0.6
O4' C1' H1' C2' 241.3 245.9
O4' C1' H1' N9 119.7 122.9
H1' C1' C2' H2' 99.0 160.3
C2' C1' H1' N9 238.4 237.0
H1' C1' N9 C8 166.8 151.4
H1' C1' N9 C4 345.0 331.2
C8 N9 C1' H1' 166.8 151.4
C1' N9 C8 C4 178.5 179.9
C8 N9 C4 C5 1.2 359.7
C8 N9 C4 N3 180.3 180.5
N7 C8 N9 H8 180.0 179.9
N9 C8 N7 C5 0.8 0.1
C4 N9 C1' H1' 345.0 331.2
C1' N9 C4 C8 181.4 180.1
C4 N9 C8 N7 358.7 0.2
C4 N9 C8 H8 178.7 180.2
N7 C5 C4 N9 359.2 0.3
C6 C5 C4 N9 178.8 180.1
C5 C4 N9 N3 180.9 179.2
C2 N3 C4 N9 181.1 179.6
N7 C8 N9 C4 358.7 0.2
N9 C8 N7 H8 180.0 180.1
C8 N7 C5 C6 180.5 180.0
C8 N7 C5 C4 0.0 359.7
H8 C8 N9 C4 178.7 180.2
N9 C8 H8 N7 180.0 179.9
H8 C8 N7 C5 180.8 180.0
N9 C4 C5 N7 359.2 0.3
C5 N7 C8 H8 180.8 180.0
C6 C5 N7 C4 180.5 180.3
N7 C5 C6 N6 359.9 359.9
N7 C5 C6 N1 180.0 180.0
N7 C5 C4 N3 180.1 179.7
N9 C4 C5 C6 178.8 180.1
N7 C5 C6 C4 179.5 179.7
C6 C5 C4 N3 359.7 359.5
N6 C6 C5 N1 180.0 179.9
C5 C6 N6 HN61 180.0 180.0
C5 C6 N6 HN62 54.8 0.1
C5 C6 N1 C2 359.6 360.0
N9 C4 C5 N3 179.1 180.7
N7 C5 C4 C6 180.4 180.2
C4 C5 C6 N6 180.5 180.2
C4 C5 C6 N1 0.5 0.3
C2 N3 C4 C5 0.0 0.5
N6 C6 C5 C4 180.5 180.2
C5 C6 N6 N1 180.0 180.1
N6 C6 N1 C2 179.6 180.0
HN61 N6 C6 HN62 125.3 179.9
N1 C6 C5 C4 0.5 0.3
C5 C6 N1 N6 180.0 179.9
N1 C6 N6 HN61 0.0 360.0
N1 C6 N6 HN62 234.7 180.0
C6 N1 C2 N3 0.1 360.0
C6 N1 C2 H2 180.0 180.0
HN61 N6 C6 N1 0.0 360.0
C6 N6 HN61 HN62 234.7 180.1
HN62 N6 C6 N1 234.7 180.0
C6 N6 HN62 HN61 134.5 179.9
N3 C2 N1 H2 180.1 180.0
N1 C2 N3 C4 0.1 359.8
N9 C4 N3 C2 181.1 179.6
C5 C4 N3 C2 0.0 0.5
N1 C2 N3 H2 179.9 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 180.2 179.7
N9 C4 N3 C5 181.1 179.1
C4 N3 C2 H2 180.2 179.7