PDB Chemical Component TRX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TRX
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CA |
1.491 |
1.469 |
N |
H |
1.000 |
1.009 |
N |
H2 |
1.000 |
1.009 |
CA |
C |
1.561 |
1.507 |
CA |
CB |
1.574 |
1.530 |
CA |
HA |
1.100 |
1.089 |
C |
O |
1.239 |
1.208 |
C |
OXT |
|
1.342 |
CB |
CG |
1.518 |
1.506 |
CB |
HB2 |
1.100 |
1.090 |
CB |
HB3 |
1.100 |
1.090 |
CG |
CD1 |
1.428 |
1.342 |
CG |
CD2 |
1.470 |
1.466 |
CD1 |
NE1 |
1.422 |
1.369 |
CD1 |
HD1 |
1.080 |
1.080 |
CD2 |
CE2 |
1.464 |
1.406 |
CD2 |
CE3 |
1.443 |
1.397 |
NE1 |
CE2 |
1.359 |
1.377 |
NE1 |
HE1 |
1.000 |
0.970 |
CE2 |
CZ2 |
1.487 |
1.392 |
CE3 |
CZ3 |
1.396 |
1.366 |
CE3 |
HE3 |
1.080 |
1.080 |
CZ2 |
CH2 |
1.471 |
1.382 |
CZ2 |
HZ2 |
1.080 |
1.080 |
CZ3 |
CH2 |
1.442 |
1.393 |
CZ3 |
HZ3 |
1.080 |
1.080 |
CH2 |
OH2 |
1.414 |
1.359 |
OH2 |
HH2 |
0.950 |
0.967 |
OXT |
HXT |
|
0.968 |
Bond Angles for TRX
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
H |
109.5 |
111.0 |
CA |
N |
H2 |
109.5 |
111.1 |
N |
CA |
C |
116.4 |
109.4 |
N |
CA |
CB |
102.5 |
109.4 |
N |
CA |
HA |
112.9 |
109.5 |
H |
N |
H2 |
109.4 |
111.0 |
C |
CA |
CB |
117.4 |
109.5 |
C |
CA |
HA |
96.2 |
109.5 |
CA |
C |
O |
118.5 |
120.0 |
CA |
C |
OXT |
|
120.0 |
CB |
CA |
HA |
111.8 |
109.5 |
CA |
CB |
CG |
118.8 |
109.5 |
CA |
CB |
HB2 |
106.5 |
109.5 |
CA |
CB |
HB3 |
106.5 |
109.4 |
O |
C |
OXT |
|
120.0 |
C |
OXT |
HXT |
|
117.0 |
CG |
CB |
HB2 |
106.5 |
109.5 |
CG |
CB |
HB3 |
106.5 |
109.5 |
CB |
CG |
CD1 |
130.9 |
126.5 |
CB |
CG |
CD2 |
124.5 |
126.5 |
HB2 |
CB |
HB3 |
112.3 |
109.5 |
CD1 |
CG |
CD2 |
104.6 |
107.0 |
CG |
CD1 |
NE1 |
110.1 |
109.9 |
CG |
CD1 |
HD1 |
125.0 |
125.0 |
CG |
CD2 |
CE2 |
107.6 |
106.0 |
CG |
CD2 |
CE3 |
133.2 |
133.9 |
NE1 |
CD1 |
HD1 |
125.0 |
125.0 |
CD1 |
NE1 |
CE2 |
109.6 |
109.9 |
CD1 |
NE1 |
HE1 |
125.2 |
125.1 |
CE2 |
CD2 |
CE3 |
119.2 |
120.0 |
CD2 |
CE2 |
NE1 |
108.1 |
107.2 |
CD2 |
CE2 |
CZ2 |
120.9 |
119.4 |
CD2 |
CE3 |
CZ3 |
121.0 |
119.8 |
CD2 |
CE3 |
HE3 |
119.5 |
120.0 |
CE2 |
NE1 |
HE1 |
125.2 |
125.1 |
NE1 |
CE2 |
CZ2 |
130.9 |
133.4 |
CE2 |
CZ2 |
CH2 |
116.4 |
119.7 |
CE2 |
CZ2 |
HZ2 |
121.8 |
120.1 |
CZ3 |
CE3 |
HE3 |
119.5 |
120.1 |
CE3 |
CZ3 |
CH2 |
121.5 |
120.5 |
CE3 |
CZ3 |
HZ3 |
119.2 |
119.8 |
CH2 |
CZ2 |
HZ2 |
121.8 |
120.2 |
CZ2 |
CH2 |
CZ3 |
121.0 |
120.6 |
CZ2 |
CH2 |
OH2 |
127.2 |
119.7 |
CH2 |
CZ3 |
HZ3 |
119.2 |
119.8 |
CZ3 |
CH2 |
OH2 |
111.8 |
119.7 |
CH2 |
OH2 |
HH2 |
109.5 |
114.0 |
Torsion Angles for TRX
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H |
N |
CA |
H2 |
240.0 |
236.1 |
C |
CA |
N |
CB |
129.6 |
120.0 |
C |
CA |
N |
HA |
250.0 |
240.0 |
N |
CA |
C |
O |
127.9 |
340.0 |
N |
CA |
C |
OXT |
|
160.1 |
CB |
CA |
N |
HA |
120.4 |
120.0 |
N |
CA |
CB |
CG |
180.1 |
295.0 |
N |
CA |
CB |
HB2 |
300.1 |
55.0 |
N |
CA |
CB |
HB3 |
60.1 |
174.9 |
CA |
N |
H |
H2 |
120.0 |
124.0 |
H |
N |
CA |
C |
180.0 |
296.0 |
H |
N |
CA |
CB |
50.4 |
176.1 |
H |
N |
CA |
HA |
290.0 |
56.0 |
CA |
N |
H2 |
H |
240.0 |
236.1 |
H2 |
N |
CA |
C |
300.0 |
60.0 |
H2 |
N |
CA |
CB |
170.4 |
300.0 |
H2 |
N |
CA |
HA |
50.0 |
180.0 |
C |
CA |
N |
H |
180.0 |
296.0 |
C |
CA |
N |
H2 |
300.0 |
60.0 |
N |
CA |
C |
CB |
238.0 |
240.0 |
N |
CA |
C |
HA |
119.5 |
120.0 |
CB |
CA |
C |
HA |
241.5 |
239.9 |
C |
CA |
CB |
CG |
51.2 |
175.0 |
C |
CA |
CB |
HB2 |
171.2 |
295.0 |
C |
CA |
CB |
HB3 |
291.1 |
55.0 |
O |
C |
CA |
OXT |
|
179.9 |
CA |
C |
OXT |
HXT |
|
180.0 |
CB |
CA |
N |
H |
50.4 |
176.1 |
CB |
CA |
N |
H2 |
170.4 |
300.0 |
N |
CA |
CB |
C |
128.9 |
120.0 |
N |
CA |
CB |
HA |
238.8 |
240.0 |
C |
CA |
CB |
HA |
109.8 |
120.0 |
CB |
CA |
C |
O |
249.9 |
99.9 |
CB |
CA |
C |
OXT |
|
280.0 |
CG |
CB |
CA |
HB2 |
240.0 |
240.0 |
CG |
CB |
CA |
HB3 |
120.0 |
120.0 |
CA |
CB |
CG |
CD1 |
228.7 |
265.0 |
CA |
CB |
CG |
CD2 |
49.2 |
84.7 |
HB2 |
CB |
CA |
HB3 |
240.0 |
240.0 |
HA |
CA |
N |
H |
290.0 |
56.0 |
HA |
CA |
N |
H2 |
50.0 |
180.0 |
N |
CA |
HA |
C |
237.8 |
240.0 |
N |
CA |
HA |
CB |
115.0 |
120.0 |
C |
CA |
HA |
CB |
237.1 |
240.0 |
HA |
CA |
C |
O |
8.4 |
220.0 |
HA |
CA |
C |
OXT |
|
40.1 |
HA |
CA |
CB |
CG |
301.3 |
55.0 |
HA |
CA |
CB |
HB2 |
61.3 |
175.0 |
HA |
CA |
CB |
HB3 |
181.3 |
295.0 |
O |
C |
CA |
CB |
249.9 |
99.9 |
O |
C |
CA |
HA |
8.4 |
220.0 |
CA |
C |
O |
OXT |
|
180.1 |
O |
C |
OXT |
HXT |
|
0.1 |
OXT |
C |
CA |
CB |
|
280.0 |
OXT |
C |
CA |
HA |
|
40.1 |
CA |
C |
OXT |
O |
|
179.9 |
CG |
CB |
CA |
HA |
301.3 |
55.0 |
CA |
CB |
CG |
HB2 |
120.0 |
120.0 |
CA |
CB |
CG |
HB3 |
240.0 |
240.0 |
HB2 |
CB |
CG |
HB3 |
120.0 |
120.0 |
CD1 |
CG |
CB |
CD2 |
179.5 |
180.3 |
CB |
CG |
CD1 |
NE1 |
180.6 |
179.9 |
CB |
CG |
CD1 |
HD1 |
0.6 |
0.0 |
CB |
CG |
CD2 |
CE2 |
179.4 |
180.1 |
CB |
CG |
CD2 |
CE3 |
0.0 |
0.0 |
HB2 |
CB |
CA |
HA |
61.3 |
175.0 |
CA |
CB |
HB2 |
CG |
232.3 |
240.0 |
CA |
CB |
HB2 |
HB3 |
116.1 |
120.0 |
CG |
CB |
HB2 |
HB3 |
243.8 |
240.0 |
HB2 |
CB |
CG |
CD1 |
108.7 |
145.0 |
HB2 |
CB |
CG |
CD2 |
289.2 |
324.7 |
HB3 |
CB |
CA |
HA |
181.3 |
295.0 |
CA |
CB |
HB3 |
CG |
127.7 |
120.0 |
CA |
CB |
HB3 |
HB2 |
243.8 |
240.0 |
CG |
CB |
HB3 |
HB2 |
116.2 |
120.0 |
HB3 |
CB |
CG |
CD1 |
348.7 |
25.0 |
HB3 |
CB |
CG |
CD2 |
169.2 |
204.7 |
CD1 |
CG |
CB |
HB2 |
108.7 |
145.0 |
CD1 |
CG |
CB |
HB3 |
348.7 |
25.0 |
CB |
CG |
CD1 |
CD2 |
180.4 |
179.8 |
CD1 |
CG |
CD2 |
CE2 |
359.8 |
359.8 |
CD1 |
CG |
CD2 |
CE3 |
180.4 |
179.8 |
NE1 |
CD1 |
CG |
HD1 |
180.0 |
179.9 |
CG |
CD1 |
NE1 |
CE2 |
360.0 |
359.9 |
CG |
CD1 |
NE1 |
HE1 |
179.9 |
180.0 |
CD2 |
CG |
CB |
HB2 |
289.2 |
324.7 |
CD2 |
CG |
CB |
HB3 |
169.2 |
204.7 |
CB |
CG |
CD2 |
CD1 |
179.6 |
180.2 |
CD2 |
CG |
CD1 |
NE1 |
0.1 |
0.2 |
CD2 |
CG |
CD1 |
HD1 |
180.2 |
180.3 |
CE2 |
CD2 |
CG |
CE3 |
179.4 |
180.0 |
CG |
CD2 |
CE2 |
NE1 |
0.1 |
0.1 |
CG |
CD2 |
CE2 |
CZ2 |
180.9 |
180.0 |
CG |
CD2 |
CE3 |
CZ3 |
179.3 |
180.0 |
CG |
CD2 |
CE3 |
HE3 |
359.3 |
360.0 |
NE1 |
CD1 |
CG |
CD2 |
0.1 |
0.2 |
CG |
CD1 |
NE1 |
HD1 |
180.0 |
180.1 |
CD2 |
CE2 |
NE1 |
CD1 |
359.9 |
360.0 |
CE2 |
NE1 |
CD1 |
HE1 |
180.0 |
179.9 |
CD1 |
NE1 |
CE2 |
CZ2 |
179.1 |
180.2 |
HD1 |
CD1 |
CG |
CD2 |
180.2 |
180.3 |
CG |
CD1 |
HD1 |
NE1 |
180.0 |
179.9 |
HD1 |
CD1 |
NE1 |
CE2 |
179.9 |
179.8 |
HD1 |
CD1 |
NE1 |
HE1 |
359.9 |
359.9 |
CG |
CD2 |
CE2 |
CE3 |
180.5 |
180.0 |
CD1 |
NE1 |
CE2 |
CD2 |
359.9 |
360.0 |
CE2 |
CD2 |
CE3 |
CZ3 |
359.9 |
0.0 |
CE2 |
CD2 |
CE3 |
HE3 |
179.9 |
180.0 |
CD2 |
CE2 |
NE1 |
HE1 |
180.0 |
179.9 |
NE1 |
CE2 |
CD2 |
CZ2 |
179.3 |
180.1 |
CD2 |
CE2 |
CZ2 |
CH2 |
359.2 |
0.0 |
CD2 |
CE2 |
CZ2 |
HZ2 |
179.2 |
179.9 |
CG |
CD2 |
CE3 |
CE2 |
179.4 |
180.0 |
CE3 |
CD2 |
CE2 |
NE1 |
179.7 |
180.1 |
CE3 |
CD2 |
CE2 |
CZ2 |
0.4 |
0.0 |
CZ3 |
CE3 |
CD2 |
HE3 |
180.0 |
180.1 |
CD2 |
CE3 |
CZ3 |
CH2 |
0.2 |
359.9 |
CD2 |
CE3 |
CZ3 |
HZ3 |
180.2 |
180.0 |
CE2 |
NE1 |
CD1 |
HD1 |
179.9 |
179.8 |
CD1 |
NE1 |
CE2 |
HE1 |
180.0 |
180.1 |
NE1 |
CE2 |
CD2 |
CE3 |
179.7 |
180.1 |
CD2 |
CE2 |
NE1 |
CZ2 |
180.8 |
179.8 |
NE1 |
CE2 |
CZ2 |
CH2 |
180.1 |
179.8 |
NE1 |
CE2 |
CZ2 |
HZ2 |
0.1 |
359.7 |
HE1 |
NE1 |
CD1 |
HD1 |
359.9 |
359.9 |
CD1 |
NE1 |
HE1 |
CE2 |
180.0 |
179.9 |
HE1 |
NE1 |
CE2 |
CZ2 |
359.1 |
0.0 |
CZ2 |
CE2 |
CD2 |
CE3 |
0.4 |
0.0 |
CD2 |
CE2 |
CZ2 |
NE1 |
179.1 |
180.2 |
CZ2 |
CE2 |
NE1 |
HE1 |
359.1 |
0.0 |
CH2 |
CZ2 |
CE2 |
HZ2 |
180.0 |
180.1 |
CE2 |
CZ2 |
CH2 |
CZ3 |
0.9 |
359.9 |
CE2 |
CZ2 |
CH2 |
OH2 |
181.4 |
180.0 |
CD2 |
CE3 |
CZ3 |
HE3 |
180.0 |
179.9 |
CZ2 |
CH2 |
CZ3 |
CE3 |
359.4 |
0.1 |
CH2 |
CZ3 |
CE3 |
HZ3 |
180.0 |
179.9 |
CE3 |
CZ3 |
CH2 |
OH2 |
179.0 |
180.0 |
CD2 |
CE3 |
HE3 |
CZ3 |
180.0 |
180.1 |
HE3 |
CE3 |
CZ3 |
CH2 |
180.2 |
180.0 |
HE3 |
CE3 |
CZ3 |
HZ3 |
0.2 |
0.1 |
CE2 |
CZ2 |
CH2 |
HZ2 |
180.0 |
179.9 |
CE3 |
CZ3 |
CH2 |
CZ2 |
359.4 |
0.1 |
CZ2 |
CH2 |
CZ3 |
HZ3 |
179.4 |
180.0 |
CZ3 |
CH2 |
CZ2 |
OH2 |
179.5 |
179.9 |
CZ2 |
CH2 |
OH2 |
HH2 |
180.0 |
90.0 |
CE2 |
CZ2 |
HZ2 |
CH2 |
180.0 |
180.1 |
HZ2 |
CZ2 |
CH2 |
CZ3 |
180.9 |
180.0 |
HZ2 |
CZ2 |
CH2 |
OH2 |
1.4 |
0.1 |
CH2 |
CZ3 |
CE3 |
HE3 |
180.2 |
180.0 |
CE3 |
CZ3 |
CH2 |
HZ3 |
180.0 |
180.1 |
CZ3 |
CH2 |
CZ2 |
HZ2 |
180.9 |
180.0 |
CZ2 |
CH2 |
CZ3 |
OH2 |
180.4 |
180.1 |
CZ3 |
CH2 |
OH2 |
HH2 |
0.5 |
270.0 |
HZ3 |
CZ3 |
CE3 |
HE3 |
0.2 |
0.1 |
CE3 |
CZ3 |
HZ3 |
CH2 |
180.0 |
179.9 |
HZ3 |
CZ3 |
CH2 |
OH2 |
358.9 |
360.0 |
OH2 |
CH2 |
CZ2 |
HZ2 |
1.4 |
0.1 |
CZ2 |
CH2 |
OH2 |
CZ3 |
179.5 |
179.9 |
OH2 |
CH2 |
CZ3 |
HZ3 |
358.9 |
360.0 |