PDB Chemical Component TRX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TRX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.491 1.469
N H 1.000 1.009
N H2 1.000 1.009
CA C 1.561 1.507
CA CB 1.574 1.530
CA HA 1.100 1.089
C O 1.239 1.208
C OXT   1.342
CB CG 1.518 1.506
CB HB2 1.100 1.090
CB HB3 1.100 1.090
CG CD1 1.428 1.342
CG CD2 1.470 1.466
CD1 NE1 1.422 1.369
CD1 HD1 1.080 1.080
CD2 CE2 1.464 1.406
CD2 CE3 1.443 1.397
NE1 CE2 1.359 1.377
NE1 HE1 1.000 0.970
CE2 CZ2 1.487 1.392
CE3 CZ3 1.396 1.366
CE3 HE3 1.080 1.080
CZ2 CH2 1.471 1.382
CZ2 HZ2 1.080 1.080
CZ3 CH2 1.442 1.393
CZ3 HZ3 1.080 1.080
CH2 OH2 1.414 1.359
OH2 HH2 0.950 0.967
OXT HXT   0.968

Bond Angles for TRX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 109.5 111.0
CA N H2 109.5 111.1
N CA C 116.4 109.4
N CA CB 102.5 109.4
N CA HA 112.9 109.5
H N H2 109.4 111.0
C CA CB 117.4 109.5
C CA HA 96.2 109.5
CA C O 118.5 120.0
CA C OXT   120.0
CB CA HA 111.8 109.5
CA CB CG 118.8 109.5
CA CB HB2 106.5 109.5
CA CB HB3 106.5 109.4
O C OXT   120.0
C OXT HXT   117.0
CG CB HB2 106.5 109.5
CG CB HB3 106.5 109.5
CB CG CD1 130.9 126.5
CB CG CD2 124.5 126.5
HB2 CB HB3 112.3 109.5
CD1 CG CD2 104.6 107.0
CG CD1 NE1 110.1 109.9
CG CD1 HD1 125.0 125.0
CG CD2 CE2 107.6 106.0
CG CD2 CE3 133.2 133.9
NE1 CD1 HD1 125.0 125.0
CD1 NE1 CE2 109.6 109.9
CD1 NE1 HE1 125.2 125.1
CE2 CD2 CE3 119.2 120.0
CD2 CE2 NE1 108.1 107.2
CD2 CE2 CZ2 120.9 119.4
CD2 CE3 CZ3 121.0 119.8
CD2 CE3 HE3 119.5 120.0
CE2 NE1 HE1 125.2 125.1
NE1 CE2 CZ2 130.9 133.4
CE2 CZ2 CH2 116.4 119.7
CE2 CZ2 HZ2 121.8 120.1
CZ3 CE3 HE3 119.5 120.1
CE3 CZ3 CH2 121.5 120.5
CE3 CZ3 HZ3 119.2 119.8
CH2 CZ2 HZ2 121.8 120.2
CZ2 CH2 CZ3 121.0 120.6
CZ2 CH2 OH2 127.2 119.7
CH2 CZ3 HZ3 119.2 119.8
CZ3 CH2 OH2 111.8 119.7
CH2 OH2 HH2 109.5 114.0

Torsion Angles for TRX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 240.0 236.1
C CA N CB 129.6 120.0
C CA N HA 250.0 240.0
N CA C O 127.9 340.0
N CA C OXT   160.1
CB CA N HA 120.4 120.0
N CA CB CG 180.1 295.0
N CA CB HB2 300.1 55.0
N CA CB HB3 60.1 174.9
CA N H H2 120.0 124.0
H N CA C 180.0 296.0
H N CA CB 50.4 176.1
H N CA HA 290.0 56.0
CA N H2 H 240.0 236.1
H2 N CA C 300.0 60.0
H2 N CA CB 170.4 300.0
H2 N CA HA 50.0 180.0
C CA N H 180.0 296.0
C CA N H2 300.0 60.0
N CA C CB 238.0 240.0
N CA C HA 119.5 120.0
CB CA C HA 241.5 239.9
C CA CB CG 51.2 175.0
C CA CB HB2 171.2 295.0
C CA CB HB3 291.1 55.0
O C CA OXT   179.9
CA C OXT HXT   180.0
CB CA N H 50.4 176.1
CB CA N H2 170.4 300.0
N CA CB C 128.9 120.0
N CA CB HA 238.8 240.0
C CA CB HA 109.8 120.0
CB CA C O 249.9 99.9
CB CA C OXT   280.0
CG CB CA HB2 240.0 240.0
CG CB CA HB3 120.0 120.0
CA CB CG CD1 228.7 265.0
CA CB CG CD2 49.2 84.7
HB2 CB CA HB3 240.0 240.0
HA CA N H 290.0 56.0
HA CA N H2 50.0 180.0
N CA HA C 237.8 240.0
N CA HA CB 115.0 120.0
C CA HA CB 237.1 240.0
HA CA C O 8.4 220.0
HA CA C OXT   40.1
HA CA CB CG 301.3 55.0
HA CA CB HB2 61.3 175.0
HA CA CB HB3 181.3 295.0
O C CA CB 249.9 99.9
O C CA HA 8.4 220.0
CA C O OXT   180.1
O C OXT HXT   0.1
OXT C CA CB   280.0
OXT C CA HA   40.1
CA C OXT O   179.9
CG CB CA HA 301.3 55.0
CA CB CG HB2 120.0 120.0
CA CB CG HB3 240.0 240.0
HB2 CB CG HB3 120.0 120.0
CD1 CG CB CD2 179.5 180.3
CB CG CD1 NE1 180.6 179.9
CB CG CD1 HD1 0.6 0.0
CB CG CD2 CE2 179.4 180.1
CB CG CD2 CE3 0.0 0.0
HB2 CB CA HA 61.3 175.0
CA CB HB2 CG 232.3 240.0
CA CB HB2 HB3 116.1 120.0
CG CB HB2 HB3 243.8 240.0
HB2 CB CG CD1 108.7 145.0
HB2 CB CG CD2 289.2 324.7
HB3 CB CA HA 181.3 295.0
CA CB HB3 CG 127.7 120.0
CA CB HB3 HB2 243.8 240.0
CG CB HB3 HB2 116.2 120.0
HB3 CB CG CD1 348.7 25.0
HB3 CB CG CD2 169.2 204.7
CD1 CG CB HB2 108.7 145.0
CD1 CG CB HB3 348.7 25.0
CB CG CD1 CD2 180.4 179.8
CD1 CG CD2 CE2 359.8 359.8
CD1 CG CD2 CE3 180.4 179.8
NE1 CD1 CG HD1 180.0 179.9
CG CD1 NE1 CE2 360.0 359.9
CG CD1 NE1 HE1 179.9 180.0
CD2 CG CB HB2 289.2 324.7
CD2 CG CB HB3 169.2 204.7
CB CG CD2 CD1 179.6 180.2
CD2 CG CD1 NE1 0.1 0.2
CD2 CG CD1 HD1 180.2 180.3
CE2 CD2 CG CE3 179.4 180.0
CG CD2 CE2 NE1 0.1 0.1
CG CD2 CE2 CZ2 180.9 180.0
CG CD2 CE3 CZ3 179.3 180.0
CG CD2 CE3 HE3 359.3 360.0
NE1 CD1 CG CD2 0.1 0.2
CG CD1 NE1 HD1 180.0 180.1
CD2 CE2 NE1 CD1 359.9 360.0
CE2 NE1 CD1 HE1 180.0 179.9
CD1 NE1 CE2 CZ2 179.1 180.2
HD1 CD1 CG CD2 180.2 180.3
CG CD1 HD1 NE1 180.0 179.9
HD1 CD1 NE1 CE2 179.9 179.8
HD1 CD1 NE1 HE1 359.9 359.9
CG CD2 CE2 CE3 180.5 180.0
CD1 NE1 CE2 CD2 359.9 360.0
CE2 CD2 CE3 CZ3 359.9 0.0
CE2 CD2 CE3 HE3 179.9 180.0
CD2 CE2 NE1 HE1 180.0 179.9
NE1 CE2 CD2 CZ2 179.3 180.1
CD2 CE2 CZ2 CH2 359.2 0.0
CD2 CE2 CZ2 HZ2 179.2 179.9
CG CD2 CE3 CE2 179.4 180.0
CE3 CD2 CE2 NE1 179.7 180.1
CE3 CD2 CE2 CZ2 0.4 0.0
CZ3 CE3 CD2 HE3 180.0 180.1
CD2 CE3 CZ3 CH2 0.2 359.9
CD2 CE3 CZ3 HZ3 180.2 180.0
CE2 NE1 CD1 HD1 179.9 179.8
CD1 NE1 CE2 HE1 180.0 180.1
NE1 CE2 CD2 CE3 179.7 180.1
CD2 CE2 NE1 CZ2 180.8 179.8
NE1 CE2 CZ2 CH2 180.1 179.8
NE1 CE2 CZ2 HZ2 0.1 359.7
HE1 NE1 CD1 HD1 359.9 359.9
CD1 NE1 HE1 CE2 180.0 179.9
HE1 NE1 CE2 CZ2 359.1 0.0
CZ2 CE2 CD2 CE3 0.4 0.0
CD2 CE2 CZ2 NE1 179.1 180.2
CZ2 CE2 NE1 HE1 359.1 0.0
CH2 CZ2 CE2 HZ2 180.0 180.1
CE2 CZ2 CH2 CZ3 0.9 359.9
CE2 CZ2 CH2 OH2 181.4 180.0
CD2 CE3 CZ3 HE3 180.0 179.9
CZ2 CH2 CZ3 CE3 359.4 0.1
CH2 CZ3 CE3 HZ3 180.0 179.9
CE3 CZ3 CH2 OH2 179.0 180.0
CD2 CE3 HE3 CZ3 180.0 180.1
HE3 CE3 CZ3 CH2 180.2 180.0
HE3 CE3 CZ3 HZ3 0.2 0.1
CE2 CZ2 CH2 HZ2 180.0 179.9
CE3 CZ3 CH2 CZ2 359.4 0.1
CZ2 CH2 CZ3 HZ3 179.4 180.0
CZ3 CH2 CZ2 OH2 179.5 179.9
CZ2 CH2 OH2 HH2 180.0 90.0
CE2 CZ2 HZ2 CH2 180.0 180.1
HZ2 CZ2 CH2 CZ3 180.9 180.0
HZ2 CZ2 CH2 OH2 1.4 0.1
CH2 CZ3 CE3 HE3 180.2 180.0
CE3 CZ3 CH2 HZ3 180.0 180.1
CZ3 CH2 CZ2 HZ2 180.9 180.0
CZ2 CH2 CZ3 OH2 180.4 180.1
CZ3 CH2 OH2 HH2 0.5 270.0
HZ3 CZ3 CE3 HE3 0.2 0.1
CE3 CZ3 HZ3 CH2 180.0 179.9
HZ3 CZ3 CH2 OH2 358.9 360.0
OH2 CH2 CZ2 HZ2 1.4 0.1
CZ2 CH2 OH2 CZ3 179.5 179.9
OH2 CH2 CZ3 HZ3 358.9 360.0