PDB Chemical Component TRU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TRU
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| S1 |
O17 |
1.454 |
1.421 |
| S1 |
O16 |
1.444 |
1.422 |
| S1 |
N10 |
1.507 |
1.668 |
| S1 |
C2 |
1.770 |
1.768 |
| N10 |
C9 |
1.435 |
1.477 |
| N10 |
H10 |
1.000 |
0.970 |
| C9 |
C18 |
1.536 |
1.530 |
| C9 |
N8 |
1.461 |
1.460 |
| C9 |
H9 |
1.100 |
1.090 |
| C18 |
CL20 |
1.776 |
1.803 |
| C18 |
CL19 |
1.780 |
1.804 |
| C18 |
H18 |
1.100 |
1.089 |
| N8 |
C3 |
1.410 |
1.392 |
| N8 |
HN8 |
1.000 |
0.970 |
| C3 |
C4 |
1.381 |
1.394 |
| C3 |
C2 |
1.401 |
1.388 |
| C4 |
C5 |
1.396 |
1.380 |
| C4 |
H4 |
1.080 |
1.080 |
| C5 |
CL11 |
1.733 |
1.737 |
| C5 |
C6 |
1.390 |
1.383 |
| C6 |
S12 |
1.769 |
1.761 |
| C6 |
C7 |
1.388 |
1.384 |
| S12 |
N15 |
1.484 |
1.656 |
| S12 |
O14 |
1.460 |
1.421 |
| S12 |
O13 |
1.438 |
1.421 |
| N15 |
H151 |
1.000 |
0.969 |
| N15 |
H152 |
1.000 |
0.970 |
| C7 |
C2 |
1.390 |
1.379 |
| C7 |
H7 |
1.080 |
1.080 |
Bond Angles for TRU
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O17 |
S1 |
O16 |
122.4 |
125.7 |
| O17 |
S1 |
N10 |
109.5 |
106.2 |
| O17 |
S1 |
C2 |
104.3 |
106.2 |
| O16 |
S1 |
N10 |
108.0 |
106.1 |
| O16 |
S1 |
C2 |
110.7 |
106.1 |
| N10 |
S1 |
C2 |
99.5 |
104.9 |
| S1 |
N10 |
C9 |
119.7 |
115.8 |
| S1 |
N10 |
H10 |
106.2 |
122.1 |
| S1 |
C2 |
C3 |
122.0 |
119.4 |
| S1 |
C2 |
C7 |
116.1 |
119.9 |
| C9 |
N10 |
H10 |
106.2 |
122.1 |
| N10 |
C9 |
C18 |
114.2 |
109.7 |
| N10 |
C9 |
N8 |
113.1 |
108.8 |
| N10 |
C9 |
H9 |
105.8 |
109.6 |
| C18 |
C9 |
N8 |
115.8 |
109.6 |
| C18 |
C9 |
H9 |
102.4 |
109.6 |
| C9 |
C18 |
CL20 |
108.7 |
109.5 |
| C9 |
C18 |
CL19 |
108.6 |
109.4 |
| C9 |
C18 |
H18 |
110.0 |
109.5 |
| N8 |
C9 |
H9 |
103.7 |
109.6 |
| C9 |
N8 |
C3 |
116.8 |
123.4 |
| C9 |
N8 |
HN8 |
107.1 |
118.3 |
| CL20 |
C18 |
CL19 |
107.9 |
109.5 |
| CL20 |
C18 |
H18 |
110.8 |
109.5 |
| CL19 |
C18 |
H18 |
110.8 |
109.5 |
| C3 |
N8 |
HN8 |
107.1 |
118.3 |
| N8 |
C3 |
C4 |
117.7 |
118.8 |
| N8 |
C3 |
C2 |
122.2 |
122.2 |
| C4 |
C3 |
C2 |
120.1 |
119.0 |
| C3 |
C4 |
C5 |
117.4 |
120.2 |
| C3 |
C4 |
H4 |
121.3 |
119.9 |
| C3 |
C2 |
C7 |
121.9 |
120.7 |
| C5 |
C4 |
H4 |
121.3 |
119.9 |
| C4 |
C5 |
CL11 |
115.5 |
119.8 |
| C4 |
C5 |
C6 |
122.9 |
120.3 |
| CL11 |
C5 |
C6 |
121.6 |
119.8 |
| C5 |
C6 |
S12 |
120.0 |
120.1 |
| C5 |
C6 |
C7 |
119.5 |
119.8 |
| S12 |
C6 |
C7 |
120.5 |
120.1 |
| C6 |
S12 |
N15 |
106.8 |
107.4 |
| C6 |
S12 |
O14 |
107.7 |
105.8 |
| C6 |
S12 |
O13 |
104.0 |
105.8 |
| C6 |
C7 |
C2 |
118.2 |
120.0 |
| C6 |
C7 |
H7 |
120.9 |
120.0 |
| N15 |
S12 |
O14 |
106.5 |
105.7 |
| N15 |
S12 |
O13 |
110.5 |
105.7 |
| S12 |
N15 |
H151 |
109.5 |
120.1 |
| S12 |
N15 |
H152 |
109.5 |
120.0 |
| O14 |
S12 |
O13 |
120.6 |
125.4 |
| H151 |
N15 |
H152 |
109.5 |
120.0 |
| C2 |
C7 |
H7 |
120.9 |
120.0 |
Torsion Angles for TRU
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O16 |
S1 |
O17 |
N10 |
232.1 |
124.4 |
| O16 |
S1 |
O17 |
C2 |
126.4 |
235.6 |
| N10 |
S1 |
O17 |
C2 |
254.3 |
111.3 |
| O17 |
S1 |
N10 |
C9 |
60.9 |
287.3 |
| O17 |
S1 |
N10 |
H10 |
180.8 |
107.3 |
| O17 |
S1 |
C2 |
C3 |
263.2 |
101.4 |
| O17 |
S1 |
C2 |
C7 |
83.2 |
282.2 |
| O17 |
S1 |
O16 |
N10 |
128.5 |
235.6 |
| O17 |
S1 |
O16 |
C2 |
236.5 |
124.4 |
| N10 |
S1 |
O16 |
C2 |
107.9 |
248.8 |
| O16 |
S1 |
N10 |
C9 |
196.4 |
151.5 |
| O16 |
S1 |
N10 |
H10 |
316.4 |
331.6 |
| O16 |
S1 |
C2 |
C3 |
129.8 |
237.2 |
| O16 |
S1 |
C2 |
C7 |
309.8 |
57.9 |
| O17 |
S1 |
N10 |
O16 |
224.5 |
135.8 |
| O17 |
S1 |
N10 |
C2 |
108.9 |
247.9 |
| O16 |
S1 |
N10 |
C2 |
244.5 |
112.1 |
| N10 |
S1 |
C2 |
C3 |
16.3 |
349.3 |
| N10 |
S1 |
C2 |
C7 |
196.3 |
170.0 |
| C9 |
N10 |
S1 |
H10 |
240.0 |
180.0 |
| S1 |
N10 |
C9 |
C18 |
200.6 |
61.7 |
| S1 |
N10 |
C9 |
N8 |
65.3 |
301.8 |
| S1 |
N10 |
C9 |
H9 |
312.4 |
182.0 |
| O17 |
S1 |
C2 |
O16 |
133.4 |
224.2 |
| O17 |
S1 |
C2 |
N10 |
246.9 |
112.1 |
| O16 |
S1 |
C2 |
N10 |
113.5 |
247.9 |
| C2 |
S1 |
N10 |
C9 |
311.9 |
39.4 |
| C2 |
S1 |
N10 |
H10 |
71.9 |
219.5 |
| N8 |
C3 |
C2 |
S1 |
360.0 |
2.2 |
| C4 |
C3 |
C2 |
S1 |
180.0 |
181.7 |
| C3 |
C2 |
S1 |
C7 |
180.0 |
179.2 |
| C6 |
C7 |
C2 |
S1 |
180.0 |
178.6 |
| S1 |
C2 |
C7 |
H7 |
0.0 |
358.7 |
| C9 |
N10 |
S1 |
C2 |
311.9 |
39.4 |
| S1 |
N10 |
C9 |
H10 |
120.0 |
180.0 |
| C18 |
C9 |
N10 |
N8 |
135.3 |
119.9 |
| C18 |
C9 |
N10 |
H9 |
248.2 |
239.7 |
| N10 |
C9 |
C18 |
CL20 |
48.7 |
55.8 |
| N10 |
C9 |
C18 |
CL19 |
165.8 |
175.8 |
| N10 |
C9 |
C18 |
H18 |
287.3 |
295.8 |
| N8 |
C9 |
N10 |
H9 |
112.9 |
119.8 |
| N10 |
C9 |
N8 |
C3 |
320.2 |
50.1 |
| N10 |
C9 |
N8 |
HN8 |
80.3 |
230.2 |
| H10 |
N10 |
S1 |
C2 |
71.9 |
219.5 |
| S1 |
N10 |
H10 |
C9 |
231.6 |
180.0 |
| H10 |
N10 |
C9 |
C18 |
80.6 |
241.7 |
| H10 |
N10 |
C9 |
N8 |
305.3 |
121.8 |
| H10 |
N10 |
C9 |
H9 |
192.4 |
2.0 |
| C18 |
C9 |
N10 |
H10 |
80.6 |
241.7 |
| N10 |
C9 |
C18 |
N8 |
225.9 |
240.6 |
| N10 |
C9 |
C18 |
H9 |
113.8 |
120.3 |
| N8 |
C9 |
C18 |
H9 |
247.9 |
239.7 |
| C18 |
C9 |
N8 |
C3 |
185.7 |
290.1 |
| C18 |
C9 |
N8 |
HN8 |
305.7 |
110.2 |
| CL20 |
C18 |
C9 |
CL19 |
242.9 |
240.0 |
| CL20 |
C18 |
C9 |
H18 |
121.4 |
120.0 |
| CL19 |
C18 |
C9 |
H18 |
238.5 |
240.0 |
| N8 |
C9 |
N10 |
H10 |
305.3 |
121.8 |
| N10 |
C9 |
N8 |
C18 |
134.5 |
119.9 |
| N10 |
C9 |
N8 |
H9 |
245.9 |
240.2 |
| C18 |
C9 |
N8 |
H9 |
111.3 |
120.3 |
| N8 |
C9 |
C18 |
CL20 |
182.8 |
175.2 |
| N8 |
C9 |
C18 |
CL19 |
299.9 |
295.1 |
| N8 |
C9 |
C18 |
H18 |
61.3 |
55.1 |
| C3 |
N8 |
C9 |
HN8 |
240.0 |
179.9 |
| C9 |
N8 |
C3 |
C4 |
190.5 |
158.3 |
| C9 |
N8 |
C3 |
C2 |
10.5 |
337.8 |
| H9 |
C9 |
N10 |
H10 |
192.4 |
2.0 |
| N10 |
C9 |
H9 |
C18 |
240.1 |
239.6 |
| N10 |
C9 |
H9 |
N8 |
119.3 |
119.3 |
| C18 |
C9 |
H9 |
N8 |
239.2 |
239.7 |
| H9 |
C9 |
C18 |
CL20 |
294.9 |
295.5 |
| H9 |
C9 |
C18 |
CL19 |
52.0 |
55.4 |
| H9 |
C9 |
C18 |
H18 |
173.4 |
175.4 |
| H9 |
C9 |
N8 |
C3 |
74.4 |
169.8 |
| H9 |
C9 |
N8 |
HN8 |
194.4 |
349.9 |
| CL20 |
C18 |
C9 |
N8 |
182.8 |
175.2 |
| CL20 |
C18 |
C9 |
H9 |
294.9 |
295.5 |
| C9 |
C18 |
CL20 |
CL19 |
117.6 |
120.0 |
| C9 |
C18 |
CL20 |
H18 |
239.0 |
240.0 |
| CL19 |
C18 |
CL20 |
H18 |
121.4 |
120.0 |
| CL19 |
C18 |
C9 |
N8 |
299.9 |
295.1 |
| CL19 |
C18 |
C9 |
H9 |
52.0 |
55.4 |
| C9 |
C18 |
CL19 |
CL20 |
242.4 |
240.0 |
| C9 |
C18 |
CL19 |
H18 |
121.0 |
120.0 |
| CL20 |
C18 |
CL19 |
H18 |
238.6 |
240.0 |
| H18 |
C18 |
C9 |
N8 |
61.3 |
55.1 |
| H18 |
C18 |
C9 |
H9 |
173.4 |
175.4 |
| C9 |
C18 |
H18 |
CL20 |
120.2 |
120.0 |
| C9 |
C18 |
H18 |
CL19 |
239.9 |
240.0 |
| CL20 |
C18 |
H18 |
CL19 |
119.7 |
120.0 |
| S1 |
C2 |
C3 |
N8 |
360.0 |
2.2 |
| C3 |
N8 |
C9 |
H9 |
74.4 |
169.8 |
| C9 |
N8 |
C3 |
HN8 |
120.0 |
180.1 |
| C4 |
C3 |
N8 |
C2 |
180.0 |
180.5 |
| N8 |
C3 |
C4 |
C5 |
180.0 |
178.6 |
| N8 |
C3 |
C4 |
H4 |
360.0 |
358.9 |
| N8 |
C3 |
C2 |
C7 |
180.0 |
181.4 |
| HN8 |
N8 |
C9 |
H9 |
194.4 |
349.9 |
| C9 |
N8 |
HN8 |
C3 |
234.0 |
179.9 |
| HN8 |
N8 |
C3 |
C4 |
70.5 |
338.2 |
| HN8 |
N8 |
C3 |
C2 |
250.5 |
157.7 |
| S1 |
C2 |
C3 |
C4 |
180.0 |
181.7 |
| C4 |
C3 |
N8 |
HN8 |
70.5 |
338.2 |
| N8 |
C3 |
C4 |
C2 |
180.0 |
179.5 |
| C4 |
C3 |
C2 |
C7 |
360.0 |
0.9 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
179.7 |
| C3 |
C4 |
C5 |
CL11 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
360.0 |
0.6 |
| S1 |
C2 |
C3 |
C7 |
180.0 |
180.8 |
| C2 |
C3 |
N8 |
HN8 |
250.5 |
157.7 |
| N8 |
C3 |
C2 |
C4 |
180.0 |
180.5 |
| C2 |
C3 |
C4 |
C5 |
0.0 |
359.1 |
| C2 |
C3 |
C4 |
H4 |
180.0 |
179.4 |
| C6 |
C7 |
C2 |
C3 |
0.0 |
359.4 |
| C3 |
C2 |
C7 |
H7 |
180.0 |
179.4 |
| C5 |
C4 |
C3 |
C2 |
0.0 |
359.1 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.3 |
| CL11 |
C5 |
C4 |
C6 |
180.0 |
179.4 |
| C4 |
C5 |
C6 |
S12 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
C7 |
0.0 |
359.7 |
| H4 |
C4 |
C3 |
C2 |
180.0 |
179.4 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
179.7 |
| H4 |
C4 |
C5 |
CL11 |
360.0 |
359.7 |
| H4 |
C4 |
C5 |
C6 |
180.0 |
180.2 |
| CL11 |
C5 |
C4 |
H4 |
360.0 |
359.7 |
| C4 |
C5 |
CL11 |
C6 |
180.0 |
180.6 |
| CL11 |
C5 |
C6 |
S12 |
0.0 |
0.6 |
| CL11 |
C5 |
C6 |
C7 |
180.0 |
180.3 |
| C6 |
C5 |
C4 |
H4 |
180.0 |
180.2 |
| C4 |
C5 |
C6 |
CL11 |
180.0 |
179.4 |
| S12 |
C6 |
C5 |
C7 |
180.0 |
180.3 |
| C5 |
C6 |
S12 |
N15 |
188.3 |
294.7 |
| C5 |
C6 |
S12 |
O14 |
302.3 |
182.1 |
| C5 |
C6 |
S12 |
O13 |
71.4 |
47.3 |
| C5 |
C6 |
C7 |
C2 |
360.0 |
0.3 |
| C5 |
C6 |
C7 |
H7 |
180.0 |
180.2 |
| C5 |
C6 |
S12 |
C7 |
180.0 |
179.7 |
| S12 |
C6 |
C7 |
C2 |
180.0 |
180.0 |
| S12 |
C6 |
C7 |
H7 |
0.0 |
359.9 |
| N15 |
S12 |
C6 |
O14 |
246.0 |
112.6 |
| N15 |
S12 |
C6 |
O13 |
116.9 |
247.4 |
| C6 |
S12 |
N15 |
H151 |
97.3 |
240.1 |
| C6 |
S12 |
N15 |
H152 |
337.3 |
59.7 |
| O14 |
S12 |
C6 |
O13 |
230.9 |
134.8 |
| S1 |
C2 |
C7 |
C6 |
180.0 |
178.6 |
| C3 |
C2 |
C7 |
C6 |
0.0 |
359.4 |
| C5 |
C6 |
C7 |
S12 |
180.0 |
180.3 |
| C7 |
C6 |
S12 |
N15 |
8.3 |
115.0 |
| C7 |
C6 |
S12 |
O14 |
122.3 |
2.4 |
| C7 |
C6 |
S12 |
O13 |
251.4 |
227.6 |
| C2 |
C7 |
C6 |
H7 |
180.0 |
180.0 |
| N15 |
S12 |
C6 |
C7 |
8.3 |
115.0 |
| C6 |
S12 |
N15 |
O14 |
114.8 |
247.4 |
| C6 |
S12 |
N15 |
O13 |
247.5 |
112.6 |
| O14 |
S12 |
N15 |
O13 |
132.7 |
225.2 |
| H151 |
N15 |
S12 |
H152 |
120.0 |
180.4 |
| O14 |
S12 |
C6 |
C7 |
122.3 |
2.4 |
| C6 |
S12 |
O14 |
N15 |
245.8 |
113.8 |
| C6 |
S12 |
O14 |
O13 |
119.0 |
236.8 |
| N15 |
S12 |
O14 |
O13 |
233.1 |
123.1 |
| O14 |
S12 |
N15 |
H151 |
342.5 |
352.7 |
| O14 |
S12 |
N15 |
H152 |
222.5 |
172.3 |
| O13 |
S12 |
C6 |
C7 |
251.4 |
227.6 |
| C6 |
S12 |
O13 |
N15 |
114.3 |
246.2 |
| C6 |
S12 |
O13 |
O14 |
239.2 |
123.2 |
| N15 |
S12 |
O13 |
O14 |
125.0 |
236.9 |
| O13 |
S12 |
N15 |
H151 |
209.8 |
127.4 |
| O13 |
S12 |
N15 |
H152 |
89.8 |
307.0 |
| H151 |
N15 |
S12 |
O14 |
342.5 |
352.7 |
| H151 |
N15 |
S12 |
O13 |
209.8 |
127.4 |
| S12 |
N15 |
H151 |
H152 |
240.0 |
179.6 |
| H152 |
N15 |
S12 |
O14 |
222.5 |
172.3 |
| H152 |
N15 |
S12 |
O13 |
89.8 |
307.0 |
| S12 |
N15 |
H152 |
H151 |
120.0 |
180.4 |
| S1 |
C2 |
C7 |
C3 |
180.0 |
179.2 |
| C6 |
C7 |
C2 |
H7 |
180.0 |
180.0 |
| C6 |
C7 |
H7 |
C2 |
180.0 |
180.0 |