PDB Chemical Component TRR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TRR
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.377 |
1.325 |
N1 |
C6 |
1.374 |
1.324 |
N1 |
H1 |
0.984 |
0.970 |
C2 |
N2 |
1.377 |
1.384 |
C2 |
N3 |
1.381 |
1.324 |
N2 |
H21 |
0.995 |
0.970 |
N2 |
H22 |
0.990 |
0.970 |
N3 |
C4 |
1.381 |
1.329 |
C4 |
N4 |
1.376 |
1.385 |
C4 |
C5 |
1.388 |
1.396 |
N4 |
H41 |
0.988 |
0.971 |
N4 |
H42 |
0.987 |
0.969 |
C5 |
C6 |
1.389 |
1.382 |
C5 |
C7 |
1.506 |
1.507 |
C6 |
H6 |
1.099 |
1.080 |
C7 |
C11 |
1.503 |
1.507 |
C7 |
H71 |
1.093 |
1.090 |
C7 |
H72 |
1.086 |
1.090 |
C11 |
C12 |
1.392 |
1.382 |
C11 |
C16 |
1.392 |
1.382 |
C12 |
C13 |
1.401 |
1.387 |
C12 |
H12 |
1.099 |
1.080 |
C13 |
C14 |
1.394 |
1.390 |
C13 |
O13 |
1.393 |
1.360 |
C14 |
C15 |
1.394 |
1.390 |
C14 |
O14 |
1.380 |
1.361 |
C15 |
C16 |
1.401 |
1.387 |
C15 |
O15 |
1.394 |
1.360 |
C16 |
H16 |
1.100 |
1.080 |
O13 |
C17 |
1.405 |
1.429 |
O14 |
C18 |
1.400 |
1.429 |
O15 |
C19 |
1.406 |
1.429 |
C17 |
H171 |
1.090 |
1.089 |
C17 |
H172 |
1.090 |
1.090 |
C17 |
H173 |
1.090 |
1.090 |
C18 |
H181 |
1.090 |
1.090 |
C18 |
H182 |
1.090 |
1.090 |
C18 |
H183 |
1.089 |
1.090 |
C19 |
H191 |
1.091 |
1.090 |
C19 |
H192 |
1.090 |
1.091 |
C19 |
H193 |
1.089 |
1.090 |
Bond Angles for TRR
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
120.4 |
121.0 |
C2 |
N1 |
H1 |
119.8 |
119.5 |
N1 |
C2 |
N2 |
119.9 |
119.2 |
N1 |
C2 |
N3 |
119.9 |
121.6 |
C6 |
N1 |
H1 |
119.8 |
119.6 |
N1 |
C6 |
C5 |
120.1 |
119.3 |
N1 |
C6 |
H6 |
119.9 |
120.4 |
N2 |
C2 |
N3 |
120.2 |
119.2 |
C2 |
N2 |
H21 |
120.6 |
120.0 |
C2 |
N2 |
H22 |
120.4 |
120.0 |
C2 |
N3 |
C4 |
120.2 |
120.6 |
H21 |
N2 |
H22 |
119.0 |
120.0 |
N3 |
C4 |
N4 |
120.0 |
120.5 |
N3 |
C4 |
C5 |
120.0 |
119.0 |
N4 |
C4 |
C5 |
120.1 |
120.4 |
C4 |
N4 |
H41 |
120.5 |
119.9 |
C4 |
N4 |
H42 |
120.5 |
120.0 |
C4 |
C5 |
C6 |
119.5 |
118.5 |
C4 |
C5 |
C7 |
120.2 |
120.8 |
H41 |
N4 |
H42 |
119.0 |
120.0 |
C6 |
C5 |
C7 |
120.3 |
120.7 |
C5 |
C6 |
H6 |
120.0 |
120.4 |
C5 |
C7 |
C11 |
113.2 |
109.5 |
C5 |
C7 |
H71 |
108.8 |
109.4 |
C5 |
C7 |
H72 |
108.9 |
109.5 |
C11 |
C7 |
H71 |
109.2 |
109.5 |
C11 |
C7 |
H72 |
108.4 |
109.5 |
C7 |
C11 |
C12 |
120.0 |
119.9 |
C7 |
C11 |
C16 |
119.9 |
119.9 |
H71 |
C7 |
H72 |
108.3 |
109.4 |
C12 |
C11 |
C16 |
120.1 |
120.2 |
C11 |
C12 |
C13 |
120.0 |
120.1 |
C11 |
C12 |
H12 |
119.9 |
120.0 |
C11 |
C16 |
C15 |
120.1 |
120.1 |
C11 |
C16 |
H16 |
119.9 |
119.9 |
C13 |
C12 |
H12 |
120.1 |
120.0 |
C12 |
C13 |
C14 |
119.8 |
119.9 |
C12 |
C13 |
O13 |
120.7 |
120.1 |
C14 |
C13 |
O13 |
119.5 |
120.0 |
C13 |
C14 |
C15 |
120.2 |
119.8 |
C13 |
C14 |
O14 |
119.9 |
120.1 |
C13 |
O13 |
C17 |
119.2 |
106.8 |
C15 |
C14 |
O14 |
119.9 |
120.1 |
C14 |
C15 |
C16 |
119.8 |
119.9 |
C14 |
C15 |
O15 |
119.5 |
120.1 |
C14 |
O14 |
C18 |
117.9 |
106.8 |
C16 |
C15 |
O15 |
120.8 |
120.1 |
C15 |
C16 |
H16 |
120.1 |
119.9 |
C15 |
O15 |
C19 |
119.1 |
106.8 |
O13 |
C17 |
H171 |
111.4 |
109.5 |
O13 |
C17 |
H172 |
111.4 |
109.5 |
O13 |
C17 |
H173 |
111.4 |
109.5 |
O14 |
C18 |
H181 |
111.4 |
109.5 |
O14 |
C18 |
H182 |
111.5 |
109.5 |
O14 |
C18 |
H183 |
111.4 |
109.4 |
O15 |
C19 |
H191 |
111.4 |
109.5 |
O15 |
C19 |
H192 |
111.4 |
109.4 |
O15 |
C19 |
H193 |
111.5 |
109.5 |
H171 |
C17 |
H172 |
107.5 |
109.5 |
H171 |
C17 |
H173 |
107.5 |
109.5 |
H172 |
C17 |
H173 |
107.4 |
109.4 |
H181 |
C18 |
H182 |
107.4 |
109.5 |
H181 |
C18 |
H183 |
107.4 |
109.5 |
H182 |
C18 |
H183 |
107.5 |
109.5 |
H191 |
C19 |
H192 |
107.4 |
109.5 |
H191 |
C19 |
H193 |
107.4 |
109.4 |
H192 |
C19 |
H193 |
107.5 |
109.5 |
Torsion Angles for TRR
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
N1 |
C2 |
H1 |
179.9 |
180.1 |
C2 |
N1 |
C6 |
C5 |
0.0 |
359.9 |
C2 |
N1 |
C6 |
H6 |
180.0 |
180.0 |
N2 |
C2 |
N1 |
N3 |
180.0 |
179.9 |
N1 |
C2 |
N2 |
H21 |
360.0 |
0.1 |
N1 |
C2 |
N2 |
H22 |
180.0 |
180.0 |
N1 |
C2 |
N3 |
C4 |
0.0 |
359.7 |
C2 |
N1 |
C6 |
H1 |
180.1 |
179.9 |
C6 |
N1 |
C2 |
N2 |
180.0 |
180.0 |
C6 |
N1 |
C2 |
N3 |
360.0 |
0.1 |
C4 |
C5 |
C6 |
N1 |
0.0 |
0.3 |
N1 |
C6 |
C5 |
C7 |
179.9 |
179.9 |
C5 |
C6 |
N1 |
H6 |
180.0 |
179.9 |
C2 |
N1 |
H1 |
C6 |
179.9 |
180.1 |
H1 |
N1 |
C2 |
N2 |
0.0 |
359.9 |
H1 |
N1 |
C2 |
N3 |
180.0 |
180.0 |
H1 |
N1 |
C6 |
C5 |
180.0 |
180.0 |
H1 |
N1 |
C6 |
H6 |
360.0 |
0.0 |
N2 |
C2 |
N1 |
C6 |
180.0 |
180.0 |
N2 |
C2 |
N1 |
H1 |
0.0 |
359.9 |
N1 |
C2 |
N2 |
N3 |
180.0 |
180.1 |
N2 |
C2 |
N3 |
C4 |
180.0 |
179.8 |
H21 |
N2 |
C2 |
H22 |
180.0 |
180.1 |
N3 |
C2 |
N1 |
C6 |
360.0 |
0.1 |
N3 |
C2 |
N1 |
H1 |
180.0 |
180.0 |
N1 |
C2 |
N3 |
N2 |
180.0 |
179.9 |
N3 |
C2 |
N2 |
H21 |
180.0 |
180.0 |
N3 |
C2 |
N2 |
H22 |
0.0 |
359.9 |
C2 |
N3 |
C4 |
N4 |
180.0 |
180.0 |
C2 |
N3 |
C4 |
C5 |
0.0 |
0.5 |
H21 |
N2 |
C2 |
N3 |
180.0 |
180.0 |
C2 |
N2 |
H21 |
H22 |
180.0 |
179.9 |
H22 |
N2 |
C2 |
N3 |
0.0 |
359.9 |
C2 |
N2 |
H22 |
H21 |
180.0 |
180.1 |
N4 |
C4 |
N3 |
C5 |
180.0 |
179.5 |
N3 |
C4 |
N4 |
H41 |
180.0 |
360.0 |
N3 |
C4 |
N4 |
H42 |
360.0 |
180.0 |
N3 |
C4 |
C5 |
C6 |
360.0 |
359.5 |
N3 |
C4 |
C5 |
C7 |
180.1 |
179.8 |
N3 |
C4 |
N4 |
C5 |
180.0 |
180.5 |
N4 |
C4 |
C5 |
C6 |
180.0 |
179.9 |
N4 |
C4 |
C5 |
C7 |
0.1 |
0.3 |
H41 |
N4 |
C4 |
H42 |
180.0 |
180.0 |
N1 |
C6 |
C5 |
C4 |
0.0 |
0.3 |
N3 |
C4 |
C5 |
N4 |
180.0 |
179.5 |
C5 |
C4 |
N4 |
H41 |
360.0 |
179.5 |
C5 |
C4 |
N4 |
H42 |
180.0 |
359.5 |
C6 |
C5 |
C4 |
C7 |
179.9 |
179.6 |
C4 |
C5 |
C6 |
H6 |
180.0 |
180.3 |
C4 |
C5 |
C7 |
C11 |
203.4 |
84.7 |
C4 |
C5 |
C7 |
H71 |
81.9 |
324.6 |
C4 |
C5 |
C7 |
H72 |
324.1 |
204.7 |
H41 |
N4 |
C4 |
C5 |
360.0 |
179.5 |
C4 |
N4 |
H41 |
H42 |
180.0 |
180.0 |
H42 |
N4 |
C4 |
C5 |
180.0 |
359.5 |
C4 |
N4 |
H42 |
H41 |
180.0 |
180.0 |
C5 |
C6 |
N1 |
H1 |
180.0 |
180.0 |
N1 |
C6 |
C5 |
H6 |
180.0 |
180.1 |
C4 |
C5 |
C6 |
C7 |
180.1 |
180.4 |
C6 |
C5 |
C7 |
C11 |
23.5 |
265.1 |
C6 |
C5 |
C7 |
H71 |
262.0 |
145.0 |
C6 |
C5 |
C7 |
H72 |
144.2 |
25.1 |
C4 |
C5 |
C7 |
C6 |
179.9 |
179.6 |
C7 |
C5 |
C6 |
H6 |
359.9 |
359.9 |
C11 |
C7 |
C5 |
H71 |
121.5 |
120.1 |
C11 |
C7 |
C5 |
H72 |
239.3 |
240.0 |
C5 |
C7 |
C11 |
C12 |
247.3 |
90.0 |
C5 |
C7 |
C11 |
C16 |
67.1 |
270.0 |
H71 |
C7 |
C5 |
H72 |
117.8 |
119.9 |
H6 |
C6 |
N1 |
H1 |
360.0 |
0.0 |
N1 |
C6 |
H6 |
C5 |
180.0 |
179.9 |
H6 |
C6 |
C5 |
C7 |
359.9 |
359.9 |
C5 |
C7 |
C11 |
H71 |
238.7 |
240.0 |
C5 |
C7 |
C11 |
H72 |
121.0 |
120.0 |
H71 |
C7 |
C11 |
H72 |
242.3 |
240.0 |
C12 |
C11 |
C7 |
C16 |
180.2 |
180.0 |
C7 |
C11 |
C12 |
C13 |
179.9 |
180.0 |
C7 |
C11 |
C12 |
H12 |
359.9 |
0.0 |
C7 |
C11 |
C16 |
C15 |
180.0 |
180.0 |
C7 |
C11 |
C16 |
H16 |
0.1 |
359.9 |
C5 |
C7 |
H71 |
C11 |
124.0 |
120.1 |
C5 |
C7 |
H71 |
H72 |
241.8 |
240.1 |
C11 |
C7 |
H71 |
H72 |
117.8 |
120.0 |
H71 |
C7 |
C11 |
C12 |
8.6 |
210.0 |
H71 |
C7 |
C11 |
C16 |
188.4 |
30.0 |
C5 |
C7 |
H72 |
C11 |
236.4 |
239.9 |
C5 |
C7 |
H72 |
H71 |
118.1 |
119.9 |
C11 |
C7 |
H72 |
H71 |
241.7 |
240.0 |
H72 |
C7 |
C11 |
C12 |
126.3 |
330.0 |
H72 |
C7 |
C11 |
C16 |
306.1 |
150.0 |
C12 |
C11 |
C7 |
H71 |
8.6 |
210.0 |
C12 |
C11 |
C7 |
H72 |
126.3 |
330.0 |
C7 |
C11 |
C12 |
C16 |
179.8 |
180.0 |
C12 |
C11 |
C16 |
C15 |
359.9 |
0.0 |
C12 |
C11 |
C16 |
H16 |
180.0 |
180.0 |
C13 |
C12 |
C11 |
H12 |
180.1 |
180.0 |
C11 |
C12 |
C13 |
C14 |
360.0 |
0.3 |
C11 |
C12 |
C13 |
O13 |
179.9 |
180.0 |
C16 |
C11 |
C7 |
H71 |
188.4 |
30.0 |
C16 |
C11 |
C7 |
H72 |
306.1 |
150.0 |
C7 |
C11 |
C16 |
C12 |
180.2 |
180.0 |
C16 |
C11 |
C12 |
C13 |
0.1 |
360.0 |
C16 |
C11 |
C12 |
H12 |
180.0 |
180.0 |
C14 |
C15 |
C16 |
C11 |
0.1 |
359.7 |
C11 |
C16 |
C15 |
O15 |
179.8 |
180.0 |
C15 |
C16 |
C11 |
H16 |
179.9 |
180.1 |
C13 |
C12 |
C11 |
C16 |
0.1 |
360.0 |
C11 |
C12 |
C13 |
H12 |
179.9 |
180.0 |
C14 |
C13 |
C12 |
O13 |
180.1 |
180.3 |
C12 |
C13 |
C14 |
C15 |
0.0 |
359.4 |
C12 |
C13 |
C14 |
O14 |
180.0 |
179.9 |
C12 |
C13 |
O13 |
C17 |
360.0 |
0.0 |
H12 |
C12 |
C11 |
C16 |
180.0 |
180.0 |
C11 |
C12 |
H12 |
C13 |
180.1 |
180.0 |
H12 |
C12 |
C13 |
C14 |
180.0 |
180.3 |
H12 |
C12 |
C13 |
O13 |
360.0 |
360.0 |
C14 |
C13 |
C12 |
H12 |
180.0 |
180.3 |
C12 |
C13 |
C14 |
O13 |
179.9 |
179.7 |
C14 |
C13 |
O13 |
C17 |
179.9 |
179.7 |
C15 |
C14 |
C13 |
O14 |
180.0 |
179.5 |
C13 |
C14 |
C15 |
C16 |
360.0 |
0.6 |
C13 |
C14 |
C15 |
O15 |
180.2 |
180.2 |
C13 |
C14 |
O14 |
C18 |
83.6 |
269.5 |
O13 |
C13 |
C12 |
H12 |
360.0 |
360.0 |
C12 |
C13 |
O13 |
C14 |
180.1 |
180.3 |
O13 |
C13 |
C14 |
C15 |
180.1 |
179.7 |
O13 |
C13 |
C14 |
O14 |
0.0 |
0.3 |
C13 |
O13 |
C17 |
H171 |
163.7 |
300.0 |
C13 |
O13 |
C17 |
H172 |
43.7 |
60.0 |
C13 |
O13 |
C17 |
H173 |
283.7 |
179.9 |
C11 |
C16 |
C15 |
C14 |
0.1 |
359.7 |
C15 |
C14 |
C13 |
O13 |
180.1 |
179.7 |
C13 |
C14 |
C15 |
O14 |
180.0 |
180.5 |
C15 |
C14 |
O14 |
C18 |
263.5 |
90.0 |
C16 |
C15 |
C14 |
O15 |
179.7 |
180.4 |
C14 |
C15 |
C16 |
H16 |
180.0 |
179.7 |
C14 |
C15 |
O15 |
C19 |
179.4 |
180.3 |
O14 |
C14 |
C13 |
O13 |
0.0 |
0.3 |
C13 |
C14 |
O14 |
C15 |
180.0 |
179.5 |
O14 |
C14 |
C15 |
C16 |
180.0 |
180.1 |
O14 |
C14 |
C15 |
O15 |
0.3 |
359.7 |
C14 |
O14 |
C18 |
H181 |
97.8 |
180.0 |
C14 |
O14 |
C18 |
H182 |
337.9 |
300.0 |
C14 |
O14 |
C18 |
H183 |
217.8 |
60.0 |
C11 |
C16 |
C15 |
H16 |
180.1 |
179.9 |
C16 |
C15 |
C14 |
O14 |
180.0 |
180.1 |
C14 |
C15 |
C16 |
O15 |
180.3 |
179.6 |
C16 |
C15 |
O15 |
C19 |
359.7 |
360.0 |
O15 |
C15 |
C14 |
O14 |
0.3 |
359.7 |
C14 |
C15 |
O15 |
C16 |
179.7 |
180.4 |
O15 |
C15 |
C16 |
H16 |
359.7 |
0.1 |
C15 |
O15 |
C19 |
H191 |
285.0 |
180.0 |
C15 |
O15 |
C19 |
H192 |
165.1 |
300.0 |
C15 |
O15 |
C19 |
H193 |
45.0 |
60.0 |
C11 |
C16 |
H16 |
C15 |
179.9 |
180.1 |
H16 |
C16 |
C15 |
O15 |
359.7 |
0.1 |
H171 |
C17 |
O13 |
H172 |
120.1 |
239.9 |
H171 |
C17 |
O13 |
H173 |
240.0 |
120.0 |
H172 |
C17 |
O13 |
H173 |
120.0 |
240.1 |
H181 |
C18 |
O14 |
H182 |
120.0 |
240.0 |
H181 |
C18 |
O14 |
H183 |
240.1 |
120.0 |
H182 |
C18 |
O14 |
H183 |
120.1 |
240.0 |
H191 |
C19 |
O15 |
H192 |
119.9 |
240.0 |
H191 |
C19 |
O15 |
H193 |
240.0 |
120.0 |
H192 |
C19 |
O15 |
H193 |
120.1 |
240.0 |
O13 |
C17 |
H171 |
H172 |
237.6 |
120.0 |
O13 |
C17 |
H171 |
H173 |
122.3 |
240.0 |
H172 |
C17 |
H171 |
H173 |
244.6 |
119.9 |
O13 |
C17 |
H172 |
H171 |
122.3 |
239.9 |
O13 |
C17 |
H172 |
H173 |
237.8 |
119.9 |
H171 |
C17 |
H172 |
H173 |
115.4 |
240.0 |
O13 |
C17 |
H173 |
H171 |
237.7 |
120.1 |
O13 |
C17 |
H173 |
H172 |
122.3 |
240.1 |
H171 |
C17 |
H173 |
H172 |
244.6 |
120.0 |
O14 |
C18 |
H181 |
H182 |
237.7 |
120.0 |
O14 |
C18 |
H181 |
H183 |
122.3 |
240.0 |
H182 |
C18 |
H181 |
H183 |
244.6 |
120.0 |
O14 |
C18 |
H182 |
H181 |
122.3 |
240.0 |
O14 |
C18 |
H182 |
H183 |
237.6 |
120.0 |
H181 |
C18 |
H182 |
H183 |
115.4 |
240.0 |
O14 |
C18 |
H183 |
H181 |
237.8 |
120.0 |
O14 |
C18 |
H183 |
H182 |
122.4 |
240.0 |
H181 |
C18 |
H183 |
H182 |
244.6 |
120.0 |
O15 |
C19 |
H191 |
H192 |
237.8 |
120.0 |
O15 |
C19 |
H191 |
H193 |
122.4 |
240.0 |
H192 |
C19 |
H191 |
H193 |
244.6 |
120.0 |
O15 |
C19 |
H192 |
H191 |
122.2 |
239.9 |
O15 |
C19 |
H192 |
H193 |
237.5 |
120.0 |
H191 |
C19 |
H192 |
H193 |
115.3 |
240.0 |
O15 |
C19 |
H193 |
H191 |
237.7 |
120.1 |
O15 |
C19 |
H193 |
H192 |
122.4 |
240.0 |
H191 |
C19 |
H193 |
H192 |
244.7 |
120.0 |