PDB Chemical Component TRO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TRO

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.450 1.469
N H 1.019 1.009
N H2 1.021 1.008
CA CB 1.523 1.529
CA C 1.523 1.507
CA HA 1.115 1.090
CB CG 1.502 1.506
CB HB2 1.115 1.090
CB HB3 1.116 1.090
CG CD1 1.528 1.350
CG CD2 1.510 1.464
CD1 OD1 1.227 1.356
CD1 NE1 1.385 1.369
OD1 HD1 0.951 0.967
NE1 CE2 1.376 1.380
NE1 HE1 1.020 0.970
CE2 CZ2 1.410 1.389
CE2 CD2 1.414 1.406
CZ2 CH2 1.378 1.379
CZ2 HZ2 1.103 1.080
CH2 CZ3 1.410 1.387
CH2 HH2 1.103 1.080
CZ3 CE3 1.400 1.366
CZ3 HZ3 1.103 1.081
CE3 CD2 1.402 1.396
CE3 HE3 1.103 1.081
C O 1.236 1.208
C OXT 1.334 1.342
OXT HXT 0.950 0.968

Bond Angles for TRO

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 106.9 106.7
CA N H2 113.1 106.7
N CA CB 106.9 109.5
N CA C 109.1 109.4
N CA HA 111.3 109.4
H N H2 113.2 106.7
CB CA C 109.2 109.5
CB CA HA 111.2 109.5
CA CB CG 113.6 109.5
CA CB HB2 110.7 109.5
CA CB HB3 110.7 109.4
C CA HA 109.1 109.5
CA C O 120.3 120.0
CA C OXT 116.6 120.0
CG CB HB2 110.7 109.5
CG CB HB3 110.7 109.5
CB CG CD1 107.1 126.5
CB CG CD2 111.9 126.6
HB2 CB HB3 99.6 109.4
CD1 CG CD2 103.8 107.0
CG CD1 OD1 126.1 125.2
CG CD1 NE1 105.1 109.8
CG CD2 CE2 108.5 106.2
CG CD2 CE3 132.5 133.9
OD1 CD1 NE1 128.8 125.0
CD1 OD1 HD1 126.0 106.8
CD1 NE1 CE2 115.0 109.8
CD1 NE1 HE1 122.8 125.1
CE2 NE1 HE1 122.2 125.1
NE1 CE2 CZ2 130.1 133.4
NE1 CE2 CD2 107.6 107.2
CZ2 CE2 CD2 122.3 119.4
CE2 CZ2 CH2 117.5 119.8
CE2 CZ2 HZ2 122.3 120.2
CE2 CD2 CE3 119.0 119.9
CH2 CZ2 HZ2 120.1 120.1
CZ2 CH2 CZ3 121.3 120.6
CZ2 CH2 HH2 118.1 119.7
CZ3 CH2 HH2 120.6 119.7
CH2 CZ3 CE3 121.1 120.5
CH2 CZ3 HZ3 119.8 119.7
CE3 CZ3 HZ3 119.1 119.8
CZ3 CE3 CD2 118.8 119.8
CZ3 CE3 HE3 120.5 120.1
CD2 CE3 HE3 120.7 120.1
O C OXT 123.0 120.0
C OXT HXT 116.6 120.0

Torsion Angles for TRO

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 125.3 113.8
CB CA N C 242.1 240.0
CB CA N HA 121.6 120.0
N CA CB CG 296.6 300.0
N CA CB HB2 61.8 60.1
N CA CB HB3 171.3 180.0
C CA N HA 239.5 240.0
N CA C O 338.8 330.0
N CA C OXT 157.6 149.9
CA N H H2 234.8 246.2
H N CA CB 180.0 53.8
H N CA C 297.9 173.8
H N CA HA 58.4 293.8
CA N H2 H 121.8 113.8
H2 N CA CB 54.7 300.0
H2 N CA C 172.6 60.0
H2 N CA HA 293.1 180.1
CB CA N H 180.0 53.8
CB CA N H2 54.7 300.0
N CA CB C 117.9 120.0
N CA CB HA 238.4 240.1
C CA CB HA 120.5 120.1
CB CA C O 95.3 90.0
CB CA C OXT 274.1 269.9
CG CB CA HB2 234.7 239.9
CG CB CA HB3 125.2 120.0
CA CB CG CD1 270.9 90.1
CA CB CG CD2 157.8 269.7
HB2 CB CA HB3 250.5 240.1
C CA N H 297.9 173.8
C CA N H2 172.6 60.0
N CA C CB 243.5 240.0
N CA C HA 121.8 120.0
CB CA C HA 238.3 240.0
C CA CB CG 178.7 180.0
C CA CB HB2 303.9 300.1
C CA CB HB3 53.4 60.0
O C CA OXT 181.2 180.1
CA C OXT HXT 180.0 180.0
HA CA N H 58.4 293.8
HA CA N H2 293.1 180.1
N CA HA CB 119.0 120.0
N CA HA C 239.5 240.0
CB CA HA C 120.5 120.1
HA CA CB CG 58.2 59.9
HA CA CB HB2 183.5 180.0
HA CA CB HB3 293.0 299.9
HA CA C O 217.0 210.1
HA CA C OXT 35.8 30.0
CG CB CA C 178.7 180.0
CG CB CA HA 58.2 59.9
CA CB CG HB2 125.3 120.1
CA CB CG HB3 234.8 240.0
HB2 CB CG HB3 109.5 120.0
CD1 CG CB CD2 113.1 180.3
CB CG CD1 OD1 59.8 360.0
CB CG CD1 NE1 242.3 179.9
CB CG CD2 CE2 114.5 179.9
CB CG CD2 CE3 295.0 0.8
HB2 CB CA C 303.9 300.1
HB2 CB CA HA 183.5 180.0
CA CB HB2 CG 233.1 239.9
CA CB HB2 HB3 116.6 119.9
CG CB HB2 HB3 243.5 240.0
HB2 CB CG CD1 145.6 330.0
HB2 CB CG CD2 32.5 149.7
HB3 CB CA C 53.4 60.0
HB3 CB CA HA 293.0 299.9
CA CB HB3 CG 126.8 120.0
CA CB HB3 HB2 243.4 240.1
CG CB HB3 HB2 116.6 120.0
HB3 CB CG CD1 36.2 210.0
HB3 CB CG CD2 283.0 29.7
CD1 CG CB HB2 145.6 330.0
CD1 CG CB HB3 36.2 210.0
CB CG CD1 CD2 241.5 179.7
CD1 CG CD2 CE2 359.3 359.6
CD1 CG CD2 CE3 179.8 180.5
OD1 CD1 CG NE1 177.6 180.1
CG CD1 OD1 HD1 180.0 89.9
CG CD1 NE1 CE2 359.3 0.0
CG CD1 NE1 HE1 179.3 180.0
CD2 CG CB HB2 32.5 149.7
CD2 CG CB HB3 283.0 29.7
CB CG CD2 CD1 115.2 180.3
CD2 CG CD1 OD1 178.4 180.3
CD2 CG CD1 NE1 0.8 0.2
NE1 CE2 CD2 CG 0.3 0.3
CZ2 CE2 CD2 CG 180.7 180.1
CE2 CD2 CG CE3 179.5 179.2
CZ3 CE3 CD2 CG 179.1 179.6
CG CD2 CE3 HE3 359.1 359.3
OD1 CD1 CG CD2 178.4 180.3
CG CD1 OD1 NE1 183.0 179.9
OD1 CD1 NE1 CE2 181.9 179.9
OD1 CD1 NE1 HE1 1.9 360.0
NE1 CD1 CG CD2 0.8 0.2
CG CD1 NE1 OD1 177.5 180.1
NE1 CD1 OD1 HD1 356.9 270.0
CE2 NE1 CD1 HE1 180.0 180.0
CD1 NE1 CE2 CZ2 179.8 180.0
CD1 NE1 CE2 CD2 0.2 359.8
HD1 OD1 CD1 NE1 356.9 270.0
CG CD2 CE2 NE1 0.3 0.3
CD1 NE1 CE2 HE1 180.0 180.0
CZ2 CE2 NE1 CD2 179.6 180.2
NE1 CE2 CZ2 CH2 180.4 180.0
NE1 CE2 CZ2 HZ2 0.4 359.9
NE1 CE2 CD2 CE3 179.9 179.7
CD1 NE1 HE1 CE2 180.0 180.0
HE1 NE1 CE2 CZ2 359.8 360.0
HE1 NE1 CE2 CD2 180.2 179.8
CG CD2 CE2 CZ2 180.7 180.1
CZ2 CE2 NE1 HE1 359.8 360.0
NE1 CE2 CZ2 CD2 180.5 179.7
CZ2 CE2 CD2 CE3 0.3 359.5
CH2 CZ2 CE2 HZ2 180.0 180.0
CE2 CZ2 CH2 CZ3 360.0 0.0
CE2 CZ2 CH2 HH2 180.0 180.0
CG CD2 CE2 CE3 180.4 180.7
CD2 CE2 NE1 HE1 180.2 179.8
NE1 CE2 CD2 CZ2 179.6 180.2
CD2 CE2 CZ2 CH2 359.9 0.2
CD2 CE2 CZ2 HZ2 179.9 180.2
CZ3 CE3 CD2 CE2 359.7 0.6
CE2 CD2 CE3 HE3 179.7 180.2
CH2 CZ2 CE2 CD2 359.9 0.2
CE2 CZ2 CH2 HZ2 180.0 180.0
CZ3 CH2 CZ2 HH2 180.0 180.0
CZ2 CH2 CZ3 CE3 360.0 360.0
CZ2 CH2 CZ3 HZ3 180.0 180.0
HZ2 CZ2 CE2 CD2 179.9 180.2
CE2 CZ2 HZ2 CH2 180.0 180.0
HZ2 CZ2 CH2 CZ3 179.9 180.1
HZ2 CZ2 CH2 HH2 359.9 0.1
CZ3 CH2 CZ2 HZ2 179.9 180.1
CZ2 CH2 CZ3 HH2 180.0 180.0
CE3 CZ3 CH2 HZ3 180.0 180.0
CH2 CZ3 CE3 CD2 0.2 359.7
CH2 CZ3 CE3 HE3 180.2 180.0
HH2 CH2 CZ2 HZ2 359.9 0.1
CZ2 CH2 HH2 CZ3 180.0 180.0
HH2 CH2 CZ3 CE3 180.0 180.0
HH2 CH2 CZ3 HZ3 360.0 0.0
CG CD2 CE3 CZ3 179.1 179.6
CE2 CD2 CE3 CZ3 359.7 0.6
CE3 CZ3 CH2 HH2 180.0 180.0
CH2 CZ3 CE3 HZ3 180.0 180.0
CD2 CE3 CZ3 HE3 180.0 179.7
HZ3 CZ3 CH2 HH2 360.0 0.0
CH2 CZ3 HZ3 CE3 180.0 180.0
HZ3 CZ3 CE3 CD2 180.2 179.7
HZ3 CZ3 CE3 HE3 0.2 0.0
CG CD2 CE3 CE2 179.4 179.1
CD2 CE3 CZ3 HZ3 180.2 179.7
CZ3 CE3 CD2 HE3 180.0 180.3
HE3 CE3 CZ3 HZ3 0.2 0.0
CZ3 CE3 HE3 CD2 180.0 179.7
O C CA HA 217.0 210.1
CA C O OXT 178.7 179.9
O C OXT HXT 358.7 359.9
OXT C CA HA 35.8 30.0
CA C OXT O 181.2 180.1