PDB Chemical Component TRO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TRO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.450 |
1.469 |
| N |
H |
1.019 |
1.009 |
| N |
H2 |
1.021 |
1.008 |
| CA |
CB |
1.523 |
1.529 |
| CA |
C |
1.523 |
1.507 |
| CA |
HA |
1.115 |
1.090 |
| CB |
CG |
1.502 |
1.506 |
| CB |
HB2 |
1.115 |
1.090 |
| CB |
HB3 |
1.116 |
1.090 |
| CG |
CD1 |
1.528 |
1.350 |
| CG |
CD2 |
1.510 |
1.464 |
| CD1 |
OD1 |
1.227 |
1.356 |
| CD1 |
NE1 |
1.385 |
1.369 |
| OD1 |
HD1 |
0.951 |
0.967 |
| NE1 |
CE2 |
1.376 |
1.380 |
| NE1 |
HE1 |
1.020 |
0.970 |
| CE2 |
CZ2 |
1.410 |
1.389 |
| CE2 |
CD2 |
1.414 |
1.406 |
| CZ2 |
CH2 |
1.378 |
1.379 |
| CZ2 |
HZ2 |
1.103 |
1.080 |
| CH2 |
CZ3 |
1.410 |
1.387 |
| CH2 |
HH2 |
1.103 |
1.080 |
| CZ3 |
CE3 |
1.400 |
1.366 |
| CZ3 |
HZ3 |
1.103 |
1.081 |
| CE3 |
CD2 |
1.402 |
1.396 |
| CE3 |
HE3 |
1.103 |
1.081 |
| C |
O |
1.236 |
1.208 |
| C |
OXT |
1.334 |
1.342 |
| OXT |
HXT |
0.950 |
0.968 |
Bond Angles for TRO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
106.9 |
106.7 |
| CA |
N |
H2 |
113.1 |
106.7 |
| N |
CA |
CB |
106.9 |
109.5 |
| N |
CA |
C |
109.1 |
109.4 |
| N |
CA |
HA |
111.3 |
109.4 |
| H |
N |
H2 |
113.2 |
106.7 |
| CB |
CA |
C |
109.2 |
109.5 |
| CB |
CA |
HA |
111.2 |
109.5 |
| CA |
CB |
CG |
113.6 |
109.5 |
| CA |
CB |
HB2 |
110.7 |
109.5 |
| CA |
CB |
HB3 |
110.7 |
109.4 |
| C |
CA |
HA |
109.1 |
109.5 |
| CA |
C |
O |
120.3 |
120.0 |
| CA |
C |
OXT |
116.6 |
120.0 |
| CG |
CB |
HB2 |
110.7 |
109.5 |
| CG |
CB |
HB3 |
110.7 |
109.5 |
| CB |
CG |
CD1 |
107.1 |
126.5 |
| CB |
CG |
CD2 |
111.9 |
126.6 |
| HB2 |
CB |
HB3 |
99.6 |
109.4 |
| CD1 |
CG |
CD2 |
103.8 |
107.0 |
| CG |
CD1 |
OD1 |
126.1 |
125.2 |
| CG |
CD1 |
NE1 |
105.1 |
109.8 |
| CG |
CD2 |
CE2 |
108.5 |
106.2 |
| CG |
CD2 |
CE3 |
132.5 |
133.9 |
| OD1 |
CD1 |
NE1 |
128.8 |
125.0 |
| CD1 |
OD1 |
HD1 |
126.0 |
106.8 |
| CD1 |
NE1 |
CE2 |
115.0 |
109.8 |
| CD1 |
NE1 |
HE1 |
122.8 |
125.1 |
| CE2 |
NE1 |
HE1 |
122.2 |
125.1 |
| NE1 |
CE2 |
CZ2 |
130.1 |
133.4 |
| NE1 |
CE2 |
CD2 |
107.6 |
107.2 |
| CZ2 |
CE2 |
CD2 |
122.3 |
119.4 |
| CE2 |
CZ2 |
CH2 |
117.5 |
119.8 |
| CE2 |
CZ2 |
HZ2 |
122.3 |
120.2 |
| CE2 |
CD2 |
CE3 |
119.0 |
119.9 |
| CH2 |
CZ2 |
HZ2 |
120.1 |
120.1 |
| CZ2 |
CH2 |
CZ3 |
121.3 |
120.6 |
| CZ2 |
CH2 |
HH2 |
118.1 |
119.7 |
| CZ3 |
CH2 |
HH2 |
120.6 |
119.7 |
| CH2 |
CZ3 |
CE3 |
121.1 |
120.5 |
| CH2 |
CZ3 |
HZ3 |
119.8 |
119.7 |
| CE3 |
CZ3 |
HZ3 |
119.1 |
119.8 |
| CZ3 |
CE3 |
CD2 |
118.8 |
119.8 |
| CZ3 |
CE3 |
HE3 |
120.5 |
120.1 |
| CD2 |
CE3 |
HE3 |
120.7 |
120.1 |
| O |
C |
OXT |
123.0 |
120.0 |
| C |
OXT |
HXT |
116.6 |
120.0 |
Torsion Angles for TRO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
113.8 |
| CB |
CA |
N |
C |
242.1 |
240.0 |
| CB |
CA |
N |
HA |
121.6 |
120.0 |
| N |
CA |
CB |
CG |
296.6 |
300.0 |
| N |
CA |
CB |
HB2 |
61.8 |
60.1 |
| N |
CA |
CB |
HB3 |
171.3 |
180.0 |
| C |
CA |
N |
HA |
239.5 |
240.0 |
| N |
CA |
C |
O |
338.8 |
330.0 |
| N |
CA |
C |
OXT |
157.6 |
149.9 |
| CA |
N |
H |
H2 |
234.8 |
246.2 |
| H |
N |
CA |
CB |
180.0 |
53.8 |
| H |
N |
CA |
C |
297.9 |
173.8 |
| H |
N |
CA |
HA |
58.4 |
293.8 |
| CA |
N |
H2 |
H |
121.8 |
113.8 |
| H2 |
N |
CA |
CB |
54.7 |
300.0 |
| H2 |
N |
CA |
C |
172.6 |
60.0 |
| H2 |
N |
CA |
HA |
293.1 |
180.1 |
| CB |
CA |
N |
H |
180.0 |
53.8 |
| CB |
CA |
N |
H2 |
54.7 |
300.0 |
| N |
CA |
CB |
C |
117.9 |
120.0 |
| N |
CA |
CB |
HA |
238.4 |
240.1 |
| C |
CA |
CB |
HA |
120.5 |
120.1 |
| CB |
CA |
C |
O |
95.3 |
90.0 |
| CB |
CA |
C |
OXT |
274.1 |
269.9 |
| CG |
CB |
CA |
HB2 |
234.7 |
239.9 |
| CG |
CB |
CA |
HB3 |
125.2 |
120.0 |
| CA |
CB |
CG |
CD1 |
270.9 |
90.1 |
| CA |
CB |
CG |
CD2 |
157.8 |
269.7 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
240.1 |
| C |
CA |
N |
H |
297.9 |
173.8 |
| C |
CA |
N |
H2 |
172.6 |
60.0 |
| N |
CA |
C |
CB |
243.5 |
240.0 |
| N |
CA |
C |
HA |
121.8 |
120.0 |
| CB |
CA |
C |
HA |
238.3 |
240.0 |
| C |
CA |
CB |
CG |
178.7 |
180.0 |
| C |
CA |
CB |
HB2 |
303.9 |
300.1 |
| C |
CA |
CB |
HB3 |
53.4 |
60.0 |
| O |
C |
CA |
OXT |
181.2 |
180.1 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
N |
H |
58.4 |
293.8 |
| HA |
CA |
N |
H2 |
293.1 |
180.1 |
| N |
CA |
HA |
CB |
119.0 |
120.0 |
| N |
CA |
HA |
C |
239.5 |
240.0 |
| CB |
CA |
HA |
C |
120.5 |
120.1 |
| HA |
CA |
CB |
CG |
58.2 |
59.9 |
| HA |
CA |
CB |
HB2 |
183.5 |
180.0 |
| HA |
CA |
CB |
HB3 |
293.0 |
299.9 |
| HA |
CA |
C |
O |
217.0 |
210.1 |
| HA |
CA |
C |
OXT |
35.8 |
30.0 |
| CG |
CB |
CA |
C |
178.7 |
180.0 |
| CG |
CB |
CA |
HA |
58.2 |
59.9 |
| CA |
CB |
CG |
HB2 |
125.3 |
120.1 |
| CA |
CB |
CG |
HB3 |
234.8 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
109.5 |
120.0 |
| CD1 |
CG |
CB |
CD2 |
113.1 |
180.3 |
| CB |
CG |
CD1 |
OD1 |
59.8 |
360.0 |
| CB |
CG |
CD1 |
NE1 |
242.3 |
179.9 |
| CB |
CG |
CD2 |
CE2 |
114.5 |
179.9 |
| CB |
CG |
CD2 |
CE3 |
295.0 |
0.8 |
| HB2 |
CB |
CA |
C |
303.9 |
300.1 |
| HB2 |
CB |
CA |
HA |
183.5 |
180.0 |
| CA |
CB |
HB2 |
CG |
233.1 |
239.9 |
| CA |
CB |
HB2 |
HB3 |
116.6 |
119.9 |
| CG |
CB |
HB2 |
HB3 |
243.5 |
240.0 |
| HB2 |
CB |
CG |
CD1 |
145.6 |
330.0 |
| HB2 |
CB |
CG |
CD2 |
32.5 |
149.7 |
| HB3 |
CB |
CA |
C |
53.4 |
60.0 |
| HB3 |
CB |
CA |
HA |
293.0 |
299.9 |
| CA |
CB |
HB3 |
CG |
126.8 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
243.4 |
240.1 |
| CG |
CB |
HB3 |
HB2 |
116.6 |
120.0 |
| HB3 |
CB |
CG |
CD1 |
36.2 |
210.0 |
| HB3 |
CB |
CG |
CD2 |
283.0 |
29.7 |
| CD1 |
CG |
CB |
HB2 |
145.6 |
330.0 |
| CD1 |
CG |
CB |
HB3 |
36.2 |
210.0 |
| CB |
CG |
CD1 |
CD2 |
241.5 |
179.7 |
| CD1 |
CG |
CD2 |
CE2 |
359.3 |
359.6 |
| CD1 |
CG |
CD2 |
CE3 |
179.8 |
180.5 |
| OD1 |
CD1 |
CG |
NE1 |
177.6 |
180.1 |
| CG |
CD1 |
OD1 |
HD1 |
180.0 |
89.9 |
| CG |
CD1 |
NE1 |
CE2 |
359.3 |
0.0 |
| CG |
CD1 |
NE1 |
HE1 |
179.3 |
180.0 |
| CD2 |
CG |
CB |
HB2 |
32.5 |
149.7 |
| CD2 |
CG |
CB |
HB3 |
283.0 |
29.7 |
| CB |
CG |
CD2 |
CD1 |
115.2 |
180.3 |
| CD2 |
CG |
CD1 |
OD1 |
178.4 |
180.3 |
| CD2 |
CG |
CD1 |
NE1 |
0.8 |
0.2 |
| NE1 |
CE2 |
CD2 |
CG |
0.3 |
0.3 |
| CZ2 |
CE2 |
CD2 |
CG |
180.7 |
180.1 |
| CE2 |
CD2 |
CG |
CE3 |
179.5 |
179.2 |
| CZ3 |
CE3 |
CD2 |
CG |
179.1 |
179.6 |
| CG |
CD2 |
CE3 |
HE3 |
359.1 |
359.3 |
| OD1 |
CD1 |
CG |
CD2 |
178.4 |
180.3 |
| CG |
CD1 |
OD1 |
NE1 |
183.0 |
179.9 |
| OD1 |
CD1 |
NE1 |
CE2 |
181.9 |
179.9 |
| OD1 |
CD1 |
NE1 |
HE1 |
1.9 |
360.0 |
| NE1 |
CD1 |
CG |
CD2 |
0.8 |
0.2 |
| CG |
CD1 |
NE1 |
OD1 |
177.5 |
180.1 |
| NE1 |
CD1 |
OD1 |
HD1 |
356.9 |
270.0 |
| CE2 |
NE1 |
CD1 |
HE1 |
180.0 |
180.0 |
| CD1 |
NE1 |
CE2 |
CZ2 |
179.8 |
180.0 |
| CD1 |
NE1 |
CE2 |
CD2 |
0.2 |
359.8 |
| HD1 |
OD1 |
CD1 |
NE1 |
356.9 |
270.0 |
| CG |
CD2 |
CE2 |
NE1 |
0.3 |
0.3 |
| CD1 |
NE1 |
CE2 |
HE1 |
180.0 |
180.0 |
| CZ2 |
CE2 |
NE1 |
CD2 |
179.6 |
180.2 |
| NE1 |
CE2 |
CZ2 |
CH2 |
180.4 |
180.0 |
| NE1 |
CE2 |
CZ2 |
HZ2 |
0.4 |
359.9 |
| NE1 |
CE2 |
CD2 |
CE3 |
179.9 |
179.7 |
| CD1 |
NE1 |
HE1 |
CE2 |
180.0 |
180.0 |
| HE1 |
NE1 |
CE2 |
CZ2 |
359.8 |
360.0 |
| HE1 |
NE1 |
CE2 |
CD2 |
180.2 |
179.8 |
| CG |
CD2 |
CE2 |
CZ2 |
180.7 |
180.1 |
| CZ2 |
CE2 |
NE1 |
HE1 |
359.8 |
360.0 |
| NE1 |
CE2 |
CZ2 |
CD2 |
180.5 |
179.7 |
| CZ2 |
CE2 |
CD2 |
CE3 |
0.3 |
359.5 |
| CH2 |
CZ2 |
CE2 |
HZ2 |
180.0 |
180.0 |
| CE2 |
CZ2 |
CH2 |
CZ3 |
360.0 |
0.0 |
| CE2 |
CZ2 |
CH2 |
HH2 |
180.0 |
180.0 |
| CG |
CD2 |
CE2 |
CE3 |
180.4 |
180.7 |
| CD2 |
CE2 |
NE1 |
HE1 |
180.2 |
179.8 |
| NE1 |
CE2 |
CD2 |
CZ2 |
179.6 |
180.2 |
| CD2 |
CE2 |
CZ2 |
CH2 |
359.9 |
0.2 |
| CD2 |
CE2 |
CZ2 |
HZ2 |
179.9 |
180.2 |
| CZ3 |
CE3 |
CD2 |
CE2 |
359.7 |
0.6 |
| CE2 |
CD2 |
CE3 |
HE3 |
179.7 |
180.2 |
| CH2 |
CZ2 |
CE2 |
CD2 |
359.9 |
0.2 |
| CE2 |
CZ2 |
CH2 |
HZ2 |
180.0 |
180.0 |
| CZ3 |
CH2 |
CZ2 |
HH2 |
180.0 |
180.0 |
| CZ2 |
CH2 |
CZ3 |
CE3 |
360.0 |
360.0 |
| CZ2 |
CH2 |
CZ3 |
HZ3 |
180.0 |
180.0 |
| HZ2 |
CZ2 |
CE2 |
CD2 |
179.9 |
180.2 |
| CE2 |
CZ2 |
HZ2 |
CH2 |
180.0 |
180.0 |
| HZ2 |
CZ2 |
CH2 |
CZ3 |
179.9 |
180.1 |
| HZ2 |
CZ2 |
CH2 |
HH2 |
359.9 |
0.1 |
| CZ3 |
CH2 |
CZ2 |
HZ2 |
179.9 |
180.1 |
| CZ2 |
CH2 |
CZ3 |
HH2 |
180.0 |
180.0 |
| CE3 |
CZ3 |
CH2 |
HZ3 |
180.0 |
180.0 |
| CH2 |
CZ3 |
CE3 |
CD2 |
0.2 |
359.7 |
| CH2 |
CZ3 |
CE3 |
HE3 |
180.2 |
180.0 |
| HH2 |
CH2 |
CZ2 |
HZ2 |
359.9 |
0.1 |
| CZ2 |
CH2 |
HH2 |
CZ3 |
180.0 |
180.0 |
| HH2 |
CH2 |
CZ3 |
CE3 |
180.0 |
180.0 |
| HH2 |
CH2 |
CZ3 |
HZ3 |
360.0 |
0.0 |
| CG |
CD2 |
CE3 |
CZ3 |
179.1 |
179.6 |
| CE2 |
CD2 |
CE3 |
CZ3 |
359.7 |
0.6 |
| CE3 |
CZ3 |
CH2 |
HH2 |
180.0 |
180.0 |
| CH2 |
CZ3 |
CE3 |
HZ3 |
180.0 |
180.0 |
| CD2 |
CE3 |
CZ3 |
HE3 |
180.0 |
179.7 |
| HZ3 |
CZ3 |
CH2 |
HH2 |
360.0 |
0.0 |
| CH2 |
CZ3 |
HZ3 |
CE3 |
180.0 |
180.0 |
| HZ3 |
CZ3 |
CE3 |
CD2 |
180.2 |
179.7 |
| HZ3 |
CZ3 |
CE3 |
HE3 |
0.2 |
0.0 |
| CG |
CD2 |
CE3 |
CE2 |
179.4 |
179.1 |
| CD2 |
CE3 |
CZ3 |
HZ3 |
180.2 |
179.7 |
| CZ3 |
CE3 |
CD2 |
HE3 |
180.0 |
180.3 |
| HE3 |
CE3 |
CZ3 |
HZ3 |
0.2 |
0.0 |
| CZ3 |
CE3 |
HE3 |
CD2 |
180.0 |
179.7 |
| O |
C |
CA |
HA |
217.0 |
210.1 |
| CA |
C |
O |
OXT |
178.7 |
179.9 |
| O |
C |
OXT |
HXT |
358.7 |
359.9 |
| OXT |
C |
CA |
HA |
35.8 |
30.0 |
| CA |
C |
OXT |
O |
181.2 |
180.1 |