PDB Chemical Component TRH

Ideal Model

Chemical Description

Name 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE
Formula C16 H26 N2 O15 P2
Formal charge 0
Molecular weight 548.330 g/mol
Component type NON-POLYMER

Chemical features

Atom count 61
Chiral atom count 10
Chiral atoms P2 C1 C2 C3 C4 C5 P C4' C3' C1'
Bond count 63
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl (2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyltetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)
Systematic name (OpenEye OEToolkits) [hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] [(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyl-oxan-2-yl] hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) C[C@@H]1O[C@H](O[P@@](O)(=O)O[P@](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@H](O)[C@H](O)[C@H]1O
SMILES (CACTVS) C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH](O)[CH](O)[CH]1O
Stereo SMILES (OpenEye) C[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)O[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O)O)O)O
InChI descriptor InChI=1S/C16H26N2O15P2/c1-6-4-18(16(24)17-14(6)23)10-3-8(19)9(31-10)5-29-34(25,26)33-35(27,28)32-15-13(22)12(21)11(20)7(2)30-15/h4,7-13,15,19-22H,3,5H2,1-2H3,(H,25,26)(H,27,28)(H,17,23,24)/t7-,8-,9+,10+,11-,12+,13+,15+/m0/s1
InChIKey descriptor ZOSQFDVXNQFKBY-CGAXJHMRSA-N

Status Information

Last modified 2011-06-04
Created 2000-11-28
Release status REL
Model PDB code 1G3L
Processing site EBI