PDB Chemical Component TR7
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TR7
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.474 |
1.469 |
| CA |
C |
1.533 |
1.507 |
| CA |
CB |
1.526 |
1.530 |
| C |
O |
1.362 |
1.342 |
| C |
OXT |
1.233 |
1.209 |
| O |
CAJ |
1.428 |
1.451 |
| CB |
CG |
1.539 |
1.507 |
| CG |
CD1 |
1.336 |
1.342 |
| CG |
CD2 |
1.387 |
1.465 |
| CD1 |
NE1 |
1.343 |
1.369 |
| CD2 |
CE2 |
1.388 |
1.407 |
| CD2 |
CE3 |
1.390 |
1.396 |
| NE1 |
CE2 |
1.328 |
1.377 |
| CE2 |
CZ2 |
1.384 |
1.391 |
| CE3 |
CZ3 |
1.394 |
1.367 |
| CZ2 |
CH2 |
1.381 |
1.377 |
| CZ3 |
CH2 |
1.382 |
1.388 |
| N |
HN1 |
1.000 |
1.009 |
| N |
HN2 |
1.000 |
1.009 |
| CA |
HA |
1.100 |
1.090 |
| CB |
HB1C |
1.100 |
1.090 |
| CB |
HB2C |
1.100 |
1.090 |
| CAJ |
HAJ1 |
1.100 |
1.090 |
| CAJ |
HAJ2 |
1.100 |
1.090 |
| CAJ |
HAJ3 |
1.100 |
1.091 |
| CD1 |
HD1 |
1.080 |
1.081 |
| NE1 |
HE1 |
1.000 |
0.970 |
| CE3 |
HE3 |
1.080 |
1.080 |
| CZ2 |
HZ2 |
1.079 |
1.080 |
| CZ3 |
HZ3 |
1.080 |
1.080 |
| CH2 |
HH2 |
1.080 |
1.080 |
Bond Angles for TR7
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
C |
110.2 |
109.5 |
| N |
CA |
CB |
109.6 |
109.5 |
| CA |
N |
HN1 |
109.5 |
111.0 |
| CA |
N |
HN2 |
109.5 |
111.0 |
| N |
CA |
HA |
110.0 |
109.4 |
| C |
CA |
CB |
108.7 |
109.5 |
| CA |
C |
O |
119.1 |
120.0 |
| CA |
C |
OXT |
120.9 |
120.0 |
| C |
CA |
HA |
109.1 |
109.4 |
| CA |
CB |
CG |
111.2 |
109.5 |
| CB |
CA |
HA |
109.2 |
109.5 |
| CA |
CB |
HB1C |
109.0 |
109.5 |
| CA |
CB |
HB2C |
109.0 |
109.5 |
| O |
C |
OXT |
120.0 |
120.0 |
| C |
O |
CAJ |
110.6 |
117.0 |
| O |
CAJ |
HAJ1 |
109.5 |
109.5 |
| O |
CAJ |
HAJ2 |
109.4 |
109.5 |
| O |
CAJ |
HAJ3 |
109.5 |
109.5 |
| CB |
CG |
CD1 |
127.2 |
126.5 |
| CB |
CG |
CD2 |
125.7 |
126.5 |
| CG |
CB |
HB1C |
109.0 |
109.4 |
| CG |
CB |
HB2C |
109.0 |
109.5 |
| CD1 |
CG |
CD2 |
107.1 |
107.0 |
| CG |
CD1 |
NE1 |
110.1 |
109.9 |
| CG |
CD1 |
HD1 |
125.0 |
125.0 |
| CG |
CD2 |
CE2 |
106.1 |
106.1 |
| CG |
CD2 |
CE3 |
133.3 |
134.0 |
| CD1 |
NE1 |
CE2 |
108.3 |
109.9 |
| NE1 |
CD1 |
HD1 |
125.0 |
125.0 |
| CD1 |
NE1 |
HE1 |
125.9 |
125.0 |
| CE2 |
CD2 |
CE3 |
120.6 |
119.9 |
| CD2 |
CE2 |
NE1 |
108.5 |
107.1 |
| CD2 |
CE2 |
CZ2 |
119.9 |
119.4 |
| CD2 |
CE3 |
CZ3 |
119.4 |
119.8 |
| CD2 |
CE3 |
HE3 |
120.3 |
120.2 |
| NE1 |
CE2 |
CZ2 |
131.6 |
133.5 |
| CE2 |
NE1 |
HE1 |
125.8 |
125.1 |
| CE2 |
CZ2 |
CH2 |
119.3 |
119.8 |
| CE2 |
CZ2 |
HZ2 |
120.4 |
120.1 |
| CE3 |
CZ3 |
CH2 |
119.3 |
120.5 |
| CZ3 |
CE3 |
HE3 |
120.3 |
120.1 |
| CE3 |
CZ3 |
HZ3 |
120.3 |
119.7 |
| CZ2 |
CH2 |
CZ3 |
121.4 |
120.7 |
| CH2 |
CZ2 |
HZ2 |
120.3 |
120.1 |
| CZ2 |
CH2 |
HH2 |
119.3 |
119.7 |
| CH2 |
CZ3 |
HZ3 |
120.3 |
119.8 |
| CZ3 |
CH2 |
HH2 |
119.3 |
119.6 |
| HN1 |
N |
HN2 |
109.5 |
111.0 |
| HB1C |
CB |
HB2C |
109.5 |
109.4 |
| HAJ1 |
CAJ |
HAJ2 |
109.5 |
109.5 |
| HAJ1 |
CAJ |
HAJ3 |
109.5 |
109.4 |
| HAJ2 |
CAJ |
HAJ3 |
109.5 |
109.4 |
Torsion Angles for TR7
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
CA |
N |
CB |
119.6 |
120.0 |
| N |
CA |
C |
O |
150.7 |
160.0 |
| N |
CA |
C |
OXT |
330.9 |
339.9 |
| C |
CA |
N |
HA |
239.7 |
240.1 |
| N |
CA |
CB |
CG |
180.5 |
295.0 |
| CB |
CA |
N |
HA |
120.0 |
120.0 |
| N |
CA |
CB |
HB1C |
300.8 |
55.0 |
| N |
CA |
CB |
HB2C |
60.3 |
175.0 |
| HN1 |
N |
CA |
HN2 |
240.0 |
236.1 |
| N |
CA |
C |
CB |
239.8 |
240.0 |
| C |
CA |
N |
HN1 |
180.0 |
60.1 |
| C |
CA |
N |
HN2 |
300.0 |
184.0 |
| N |
CA |
C |
HA |
120.8 |
119.9 |
| C |
CA |
CB |
CG |
60.0 |
175.0 |
| CB |
CA |
C |
HA |
241.0 |
240.0 |
| C |
CA |
CB |
HB1C |
180.3 |
295.0 |
| C |
CA |
CB |
HB2C |
299.7 |
54.9 |
| O |
C |
CA |
OXT |
179.8 |
180.1 |
| CA |
C |
O |
CAJ |
180.0 |
180.0 |
| N |
CA |
CB |
C |
120.5 |
120.0 |
| CB |
CA |
N |
HN1 |
60.4 |
300.0 |
| CB |
CA |
N |
HN2 |
180.4 |
63.9 |
| N |
CA |
CB |
HA |
239.5 |
240.0 |
| CB |
CA |
C |
O |
270.8 |
280.1 |
| CB |
CA |
C |
OXT |
91.1 |
100.0 |
| C |
CA |
CB |
HA |
119.0 |
120.0 |
| CA |
CB |
CG |
CD1 |
260.6 |
265.1 |
| CA |
CB |
CG |
CD2 |
80.5 |
84.6 |
| CG |
CB |
CA |
HB1C |
239.7 |
240.0 |
| CG |
CB |
CA |
HB2C |
120.2 |
120.1 |
| HB1C |
CB |
CA |
HB2C |
240.5 |
240.1 |
| O |
C |
CA |
CB |
270.8 |
280.1 |
| CA |
C |
O |
OXT |
180.2 |
179.9 |
| O |
C |
CA |
HA |
29.9 |
40.1 |
| C |
O |
CAJ |
HAJ1 |
180.0 |
179.9 |
| C |
O |
CAJ |
HAJ2 |
300.0 |
300.0 |
| C |
O |
CAJ |
HAJ3 |
60.0 |
60.0 |
| OXT |
C |
CA |
CB |
91.1 |
100.0 |
| CA |
C |
OXT |
O |
179.8 |
180.1 |
| OXT |
C |
CA |
HA |
210.1 |
220.0 |
| OXT |
C |
O |
CAJ |
359.8 |
0.1 |
| CAJ |
O |
C |
OXT |
359.8 |
0.1 |
| HAJ1 |
CAJ |
O |
HAJ2 |
240.0 |
239.9 |
| HAJ1 |
CAJ |
O |
HAJ3 |
120.0 |
120.0 |
| HAJ2 |
CAJ |
O |
HAJ3 |
240.0 |
240.0 |
| CG |
CB |
CA |
HA |
301.0 |
55.0 |
| CA |
CB |
CG |
HB1C |
120.3 |
120.0 |
| CA |
CB |
CG |
HB2C |
239.7 |
239.9 |
| CD1 |
CG |
CB |
CD2 |
180.1 |
180.5 |
| CB |
CG |
CD1 |
NE1 |
180.2 |
179.9 |
| CB |
CG |
CD1 |
HD1 |
0.1 |
359.9 |
| CB |
CG |
CD2 |
CE2 |
179.6 |
180.1 |
| CB |
CG |
CD2 |
CE3 |
360.0 |
0.1 |
| HB1C |
CB |
CG |
HB2C |
119.5 |
119.9 |
| CB |
CG |
CD1 |
CD2 |
179.9 |
179.6 |
| CD1 |
CG |
CB |
HB1C |
140.3 |
145.1 |
| CD1 |
CG |
CB |
HB2C |
20.9 |
25.2 |
| CD1 |
CG |
CD2 |
CE2 |
359.6 |
359.7 |
| CD1 |
CG |
CD2 |
CE3 |
179.9 |
179.8 |
| CG |
CD1 |
NE1 |
CE2 |
0.1 |
359.8 |
| NE1 |
CD1 |
CG |
HD1 |
180.0 |
180.1 |
| CG |
CD1 |
NE1 |
HE1 |
180.1 |
179.9 |
| CB |
CG |
CD2 |
CD1 |
180.1 |
180.4 |
| CD2 |
CG |
CB |
HB1C |
320.2 |
324.6 |
| CD2 |
CG |
CB |
HB2C |
200.8 |
204.7 |
| CD2 |
CG |
CD1 |
NE1 |
0.2 |
0.3 |
| CD2 |
CG |
CD1 |
HD1 |
180.2 |
180.2 |
| CE2 |
CD2 |
CG |
CE3 |
179.7 |
179.9 |
| CG |
CD2 |
CE2 |
NE1 |
0.5 |
0.2 |
| CG |
CD2 |
CE2 |
CZ2 |
180.2 |
180.1 |
| CG |
CD2 |
CE3 |
CZ3 |
179.6 |
180.0 |
| CG |
CD2 |
CE3 |
HE3 |
359.6 |
359.9 |
| NE1 |
CD1 |
CG |
CD2 |
0.2 |
0.3 |
| CG |
CD1 |
NE1 |
HD1 |
180.0 |
179.9 |
| CD2 |
CE2 |
NE1 |
CD1 |
359.7 |
0.0 |
| CD1 |
NE1 |
CE2 |
CZ2 |
179.9 |
180.1 |
| CE2 |
NE1 |
CD1 |
HE1 |
180.0 |
179.9 |
| CG |
CD2 |
CE2 |
CE3 |
180.3 |
180.1 |
| CD1 |
NE1 |
CE2 |
CD2 |
359.7 |
0.0 |
| CE2 |
CD2 |
CE3 |
CZ3 |
360.0 |
0.1 |
| CE2 |
CD2 |
CE3 |
HE3 |
180.0 |
179.9 |
| NE1 |
CE2 |
CD2 |
CZ2 |
180.2 |
180.1 |
| CD2 |
CE2 |
NE1 |
HE1 |
179.6 |
179.9 |
| CD2 |
CE2 |
CZ2 |
CH2 |
0.0 |
360.0 |
| CD2 |
CE2 |
CZ2 |
HZ2 |
180.0 |
180.0 |
| CG |
CD2 |
CE3 |
CE2 |
179.7 |
179.9 |
| CE3 |
CD2 |
CE2 |
NE1 |
180.2 |
180.1 |
| CE3 |
CD2 |
CE2 |
CZ2 |
360.0 |
0.0 |
| CD2 |
CE3 |
CZ3 |
CH2 |
0.1 |
359.9 |
| CZ3 |
CE3 |
CD2 |
HE3 |
180.0 |
180.1 |
| CD2 |
CE3 |
CZ3 |
HZ3 |
180.1 |
180.0 |
| CE2 |
NE1 |
CD1 |
HD1 |
180.1 |
179.9 |
| CD1 |
NE1 |
CE2 |
HE1 |
180.0 |
180.1 |
| NE1 |
CE2 |
CD2 |
CE3 |
180.2 |
180.1 |
| CD2 |
CE2 |
NE1 |
CZ2 |
179.7 |
179.9 |
| NE1 |
CE2 |
CZ2 |
CH2 |
179.7 |
179.8 |
| NE1 |
CE2 |
CZ2 |
HZ2 |
359.7 |
359.8 |
| CZ2 |
CE2 |
CD2 |
CE3 |
360.0 |
0.0 |
| CD2 |
CE2 |
CZ2 |
NE1 |
180.3 |
180.1 |
| CZ2 |
CE2 |
NE1 |
HE1 |
359.9 |
0.0 |
| CE2 |
CZ2 |
CH2 |
CZ3 |
0.0 |
360.0 |
| CH2 |
CZ2 |
CE2 |
HZ2 |
180.0 |
180.0 |
| CE2 |
CZ2 |
CH2 |
HH2 |
180.1 |
180.0 |
| CD2 |
CE3 |
CZ3 |
HE3 |
180.0 |
179.9 |
| CZ2 |
CH2 |
CZ3 |
CE3 |
359.9 |
0.1 |
| CH2 |
CZ3 |
CE3 |
HZ3 |
180.0 |
179.9 |
| CE3 |
CZ3 |
CH2 |
HH2 |
179.9 |
180.1 |
| CE2 |
CZ2 |
CH2 |
HZ2 |
180.0 |
180.0 |
| CE3 |
CZ3 |
CH2 |
CZ2 |
359.9 |
0.1 |
| CZ2 |
CH2 |
CZ3 |
HZ3 |
179.9 |
180.0 |
| CZ3 |
CH2 |
CZ2 |
HH2 |
180.0 |
180.0 |
| CH2 |
CZ3 |
CE3 |
HE3 |
180.1 |
180.0 |
| CE3 |
CZ3 |
CH2 |
HZ3 |
180.0 |
180.1 |
| CZ3 |
CH2 |
CZ2 |
HZ2 |
180.1 |
180.0 |
| CZ2 |
CH2 |
CZ3 |
HH2 |
180.0 |
180.0 |
| HN1 |
N |
CA |
C |
180.0 |
60.1 |
| HN1 |
N |
CA |
CB |
60.4 |
300.0 |
| CA |
N |
HN1 |
HN2 |
120.0 |
123.9 |
| HN1 |
N |
CA |
HA |
300.3 |
180.0 |
| HN2 |
N |
CA |
C |
300.0 |
184.0 |
| HN2 |
N |
CA |
CB |
180.4 |
63.9 |
| CA |
N |
HN2 |
HN1 |
240.0 |
236.1 |
| HN2 |
N |
CA |
HA |
60.3 |
303.9 |
| N |
CA |
HA |
C |
239.0 |
240.0 |
| N |
CA |
HA |
CB |
120.3 |
120.0 |
| HA |
CA |
N |
HN1 |
300.3 |
180.0 |
| HA |
CA |
N |
HN2 |
60.3 |
303.9 |
| C |
CA |
HA |
CB |
241.3 |
240.0 |
| HA |
CA |
C |
O |
29.9 |
40.1 |
| HA |
CA |
C |
OXT |
210.1 |
220.0 |
| HA |
CA |
CB |
CG |
301.0 |
55.0 |
| HA |
CA |
CB |
HB1C |
61.3 |
175.0 |
| HA |
CA |
CB |
HB2C |
180.8 |
294.9 |
| CA |
CB |
HB1C |
CG |
238.4 |
239.9 |
| HB1C |
CB |
CA |
HA |
61.3 |
175.0 |
| CA |
CB |
HB1C |
HB2C |
119.2 |
120.0 |
| HB1C |
CB |
CG |
CD1 |
140.3 |
145.1 |
| HB1C |
CB |
CG |
CD2 |
320.2 |
324.6 |
| CG |
CB |
HB1C |
HB2C |
240.8 |
240.0 |
| CA |
CB |
HB2C |
CG |
121.6 |
120.1 |
| HB2C |
CB |
CA |
HA |
180.8 |
294.9 |
| CA |
CB |
HB2C |
HB1C |
240.8 |
240.0 |
| HB2C |
CB |
CG |
CD1 |
20.9 |
25.2 |
| HB2C |
CB |
CG |
CD2 |
200.8 |
204.7 |
| CG |
CB |
HB2C |
HB1C |
119.2 |
119.9 |
| O |
CAJ |
HAJ1 |
HAJ2 |
120.0 |
120.1 |
| O |
CAJ |
HAJ1 |
HAJ3 |
240.0 |
240.0 |
| HAJ2 |
CAJ |
HAJ1 |
HAJ3 |
120.0 |
119.9 |
| O |
CAJ |
HAJ2 |
HAJ1 |
240.0 |
239.9 |
| O |
CAJ |
HAJ2 |
HAJ3 |
120.0 |
120.0 |
| HAJ1 |
CAJ |
HAJ2 |
HAJ3 |
240.0 |
240.1 |
| O |
CAJ |
HAJ3 |
HAJ1 |
120.1 |
120.0 |
| O |
CAJ |
HAJ3 |
HAJ2 |
240.1 |
240.0 |
| HAJ1 |
CAJ |
HAJ3 |
HAJ2 |
120.0 |
120.0 |
| HD1 |
CD1 |
CG |
CD2 |
180.2 |
180.2 |
| CG |
CD1 |
HD1 |
NE1 |
180.0 |
180.1 |
| HD1 |
CD1 |
NE1 |
CE2 |
180.1 |
179.9 |
| HD1 |
CD1 |
NE1 |
HE1 |
0.1 |
0.0 |
| CD1 |
NE1 |
HE1 |
CE2 |
180.0 |
179.8 |
| HE1 |
NE1 |
CD1 |
HD1 |
0.1 |
0.0 |
| HE1 |
NE1 |
CE2 |
CZ2 |
359.9 |
0.0 |
| CD2 |
CE3 |
HE3 |
CZ3 |
180.0 |
180.1 |
| HE3 |
CE3 |
CZ3 |
CH2 |
180.1 |
180.0 |
| HE3 |
CE3 |
CZ3 |
HZ3 |
0.1 |
0.1 |
| CE2 |
CZ2 |
HZ2 |
CH2 |
180.0 |
180.0 |
| HZ2 |
CZ2 |
CH2 |
CZ3 |
180.1 |
180.0 |
| HZ2 |
CZ2 |
CH2 |
HH2 |
0.1 |
360.0 |
| CE3 |
CZ3 |
HZ3 |
CH2 |
180.0 |
179.9 |
| HZ3 |
CZ3 |
CE3 |
HE3 |
0.1 |
0.1 |
| HZ3 |
CZ3 |
CH2 |
HH2 |
359.9 |
0.0 |
| CZ2 |
CH2 |
HH2 |
CZ3 |
180.0 |
180.0 |
| HH2 |
CH2 |
CZ2 |
HZ2 |
0.1 |
360.0 |
| HH2 |
CH2 |
CZ3 |
HZ3 |
359.9 |
0.0 |