Atom Nomenclature for TQ1

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for TQ1

Atom Name (V3) Atom Name (V2)
C1 C1
C7 C7
C8 C8
C2 C2
C19 C19
C5 C5
C6 C6
C9 C9
C18 C18
C3 C3
C11 C11
C10 C10
C12 C12
C15 C15
C20 C20
N13 N13
N4 N4
N14 N14
N17 N17
O16 O16
O21 O21
H1 H1
H2 H2
H5 H5
H7 H7
H8 H8
H19 H19
H4 H4
H11 H11
H201 H201
H202 H202
H14 H14
H21 H21