PDB Chemical Component TPY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TPY

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C CA 1.499 1.508
C O 1.222 1.207
C H 1.103 1.080
CA CB 1.480 1.530
CA CD 1.507 1.530
CA HA 1.115 1.090
CB CC 1.496 1.507
CB CK 1.489 1.530
CB HB 1.115 1.090
CC OA 1.257 1.342
CC OB 1.253 1.208
CD CE 1.515 1.530
CD HD2 1.116 1.089
CD HD1 1.115 1.090
CE HE3 1.114 1.090
CE HE2 1.115 1.091
CE HE1 1.116 1.089
OA HOA 0.950 0.967
OC S 1.412 1.421
OD S 1.441 1.420
S N 1.629 1.656
S CF 1.763 1.763
N CK 1.441 1.465
N HN1 1.019 0.970
CK HK2 1.115 1.091
CK HK1 1.115 1.090
CF CG1 1.380 1.382
CF CG2 1.379 1.382
CG1 CH1 1.386 1.382
CG1 HG1 1.103 1.081
CG2 CH2 1.381 1.383
CG2 HG2 1.103 1.080
CH1 CI 1.383 1.382
CH1 HH1 1.103 1.080
CH2 CI 1.377 1.383
CH2 HH2 1.103 1.080
CI NJ 1.499 1.480
NJ OE 1.243 1.218
NJ OF 1.251 1.218

Bond Angles for TPY

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA C O 131.1 120.0
CA C H 127.1 120.0
C CA CB 110.3 109.5
C CA CD 109.0 109.5
C CA HA 111.3 109.5
O C H 101.8 120.0
CB CA CD 115.0 109.5
CB CA HA 104.7 109.5
CA CB CC 111.7 109.4
CA CB CK 117.4 109.5
CA CB HB 102.5 109.4
CD CA HA 106.3 109.5
CA CD CE 112.2 109.5
CA CD HD2 111.2 109.5
CA CD HD1 111.2 109.5
CC CB CK 110.9 109.5
CC CB HB 110.2 109.5
CB CC OA 116.1 120.0
CB CC OB 122.1 120.1
CK CB HB 103.4 109.5
CB CK N 120.0 109.5
CB CK HK2 108.5 109.4
CB CK HK1 108.5 109.5
OA CC OB 121.9 120.0
CC OA HOA 116.1 120.0
CE CD HD2 111.2 109.4
CE CD HD1 111.2 109.5
CD CE HE3 112.1 109.5
CD CE HE2 111.2 109.4
CD CE HE1 111.2 109.5
HD2 CD HD1 99.2 109.5
HE3 CE HE2 111.3 109.4
HE3 CE HE1 111.2 109.5
HE2 CE HE1 99.1 109.5
OC S OD 117.3 125.4
OC S N 110.8 105.8
OC S CF 115.6 105.8
OD S N 108.6 105.8
OD S CF 101.0 105.8
N S CF 102.2 107.4
S N CK 124.1 120.0
S N HN1 107.0 120.0
S CF CG1 120.3 120.0
S CF CG2 119.2 120.0
CK N HN1 107.1 120.0
N CK HK2 108.4 109.4
N CK HK1 108.4 109.5
HK2 CK HK1 101.5 109.5
CG1 CF CG2 120.5 120.0
CF CG1 CH1 118.6 120.0
CF CG1 HG1 120.5 120.0
CF CG2 CH2 120.2 120.0
CF CG2 HG2 119.9 120.1
CH1 CG1 HG1 120.9 120.0
CG1 CH1 CI 121.5 120.0
CG1 CH1 HH1 119.4 120.0
CH2 CG2 HG2 120.0 120.0
CG2 CH2 CI 120.4 120.0
CG2 CH2 HH2 120.0 120.0
CI CH1 HH1 119.1 120.1
CH1 CI CH2 118.9 120.0
CH1 CI NJ 117.3 120.0
CI CH2 HH2 119.7 120.0
CH2 CI NJ 123.8 120.0
CI NJ OE 118.5 120.0
CI NJ OF 110.4 120.0
OE NJ OF 131.1 120.0

Torsion Angles for TPY

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O C CA H 179.9 179.9
CB CA C CD 127.3 120.0
CB CA C HA 244.2 240.0
C CA CB CC 179.0 179.9
C CA CB CK 49.4 59.9
C CA CB HB 297.0 300.0
CD CA C HA 116.9 120.0
C CA CD CE 309.8 295.0
C CA CD HD2 75.0 55.0
C CA CD HD1 184.5 175.0
CA C O H 180.0 180.1
O C CA CB 69.1 240.0
O C CA CD 301.9 120.0
O C CA HA 185.0 360.0
CA C H O 180.0 179.9
H C CA CB 249.2 60.1
H C CA CD 121.9 300.0
H C CA HA 5.0 180.0
CB CA C O 69.1 240.0
CB CA C H 249.2 60.1
C CA CB CD 236.2 240.0
C CA CB HA 119.9 120.0
CD CA CB HA 243.7 240.0
CB CA CD CE 185.2 175.0
CB CA CD HD2 310.5 295.0
CB CA CD HD1 59.9 55.0
CC CB CA CK 129.6 120.0
CC CB CA HB 242.0 240.0
CA CB CC OA 145.6 180.0
CA CB CC OB 324.8 0.0
CK CB CA HB 112.4 120.0
CA CB CK N 304.2 185.0
CA CB CK HK2 69.5 65.1
CA CB CK HK1 179.0 305.0
CD CA C O 301.9 120.0
CD CA C H 121.9 300.0
C CA CD CB 124.5 120.0
C CA CD HA 239.9 240.0
CB CA CD HA 115.4 120.0
CD CA CB CC 302.9 300.0
CD CA CB CK 173.3 180.0
CD CA CB HB 60.9 60.0
CE CD CA HD2 234.7 240.0
CE CD CA HD1 125.3 120.0
CA CD CE HE3 180.0 60.0
CA CD CE HE2 305.3 300.0
CA CD CE HE1 54.7 180.0
HD2 CD CA HD1 250.5 240.0
HA CA C O 185.0 360.0
HA CA C H 5.0 180.0
C CA HA CB 240.8 240.0
C CA HA CD 118.6 120.0
CB CA HA CD 237.8 240.0
HA CA CB CC 59.1 60.0
HA CA CB CK 289.5 300.0
HA CA CB HB 177.1 180.0
HA CA CD CE 69.8 55.0
HA CA CD HD2 195.1 175.0
HA CA CD HD1 304.6 295.0
CC CB CA CD 302.9 300.0
CC CB CA HA 59.1 60.0
CA CB CC CK 227.1 240.0
CA CB CC HB 113.2 120.0
CK CB CC HB 246.2 240.0
CC CB CK N 174.3 65.0
CC CB CK HK2 299.5 305.1
CC CB CK HK1 49.0 185.1
OA CC CB OB 180.8 180.0
CB CC OA HOA 180.0 180.1
CK CB CA CD 173.3 180.0
CK CB CA HA 289.5 300.0
CA CB CK CC 130.0 120.0
CA CB CK HB 248.1 240.0
CC CB CK HB 118.1 120.1
CK CB CC OA 278.5 300.0
CK CB CC OB 97.7 120.0
S N CK CB 275.1 165.0
CB CK N HN1 40.3 345.0
N CK CB HK2 234.7 119.9
N CK CB HK1 125.2 240.0
HK2 CK CB HK1 250.5 120.0
HB CB CA CD 60.9 60.0
HB CB CA HA 177.1 180.0
CA CB HB CC 241.0 240.0
CA CB HB CK 122.4 120.0
CC CB HB CK 241.4 239.9
HB CB CC OA 32.4 60.0
HB CB CC OB 211.5 240.0
HB CB CK N 56.1 304.9
HB CB CK HK2 181.4 185.0
HB CB CK HK1 290.9 65.0
OA CC CB CK 278.5 300.0
OA CC CB HB 32.4 60.0
CB CC OA OB 179.2 180.0
OB CC CB CK 97.7 120.0
OB CC CB HB 211.5 240.0
CB CC OB OA 180.9 180.0
OB CC OA HOA 0.8 0.0
CE CD CA HA 69.8 55.0
CA CD CE HD2 125.2 120.0
CA CD CE HD1 234.7 240.0
HD2 CD CE HD1 109.5 120.0
HE3 CE CD HE2 234.7 120.0
HE3 CE CD HE1 125.2 240.0
HE2 CE CD HE1 250.6 120.0
HD2 CD CA HA 195.1 175.0
CA CD HD2 CE 234.2 240.0
CA CD HD2 HD1 117.1 120.0
CE CD HD2 HD1 242.9 240.0
HD2 CD CE HE3 54.7 300.0
HD2 CD CE HE2 180.1 180.0
HD2 CD CE HE1 289.5 60.0
HD1 CD CA HA 304.6 295.0
CA CD HD1 CE 125.8 120.0
CA CD HD1 HD2 242.9 240.0
CE CD HD1 HD2 117.1 120.0
HD1 CD CE HE3 305.2 180.0
HD1 CD CE HE2 70.6 60.0
HD1 CD CE HE1 180.0 300.0
HE3 CE CD HD2 54.7 300.0
HE3 CE CD HD1 305.2 180.0
CD CE HE3 HE2 125.3 240.0
CD CE HE3 HE1 234.8 120.0
HE2 CE HE3 HE1 109.5 240.0
HE2 CE CD HD2 180.1 180.0
HE2 CE CD HD1 70.6 60.0
CD CE HE2 HE3 234.2 120.0
CD CE HE2 HE1 117.0 240.0
HE3 CE HE2 HE1 242.8 120.0
HE1 CE CD HD2 289.5 60.0
HE1 CE CD HD1 180.0 300.0
CD CE HE1 HE3 125.7 239.9
CD CE HE1 HE2 243.0 120.0
HE3 CE HE1 HE2 117.2 240.0
HOA OA CC OB 0.8 0.0
OD S OC N 234.6 236.9
OD S OC CF 119.0 123.2
N S OC CF 244.4 246.3
OC S N CK 12.2 177.6
OC S N HN1 246.9 357.6
OC S CF CG1 302.1 337.4
OC S CF CG2 124.5 157.1
OC S OD N 126.5 123.1
OC S OD CF 233.5 236.8
N S OD CF 107.0 113.7
OD S N CK 142.4 312.4
OD S N HN1 17.1 132.4
OD S CF CG1 174.5 202.6
OD S CF CG2 356.9 22.3
CB CK N S 275.1 165.0
OC S N OD 229.8 225.2
OC S N CF 123.7 112.6
OD S N CF 253.8 247.4
N S CF CG1 62.5 90.0
N S CF CG2 244.9 269.7
CK N S HN1 125.3 180.0
S N CK HK2 149.7 285.0
S N CK HK1 40.3 45.0
OC S CF OD 127.6 134.8
OC S CF N 239.6 247.4
OD S CF N 112.0 112.6
CF S N CK 248.6 65.0
CF S N HN1 123.3 245.0
CG1 CF S CG2 177.5 180.3
S CF CG1 CH1 181.7 180.0
S CF CG1 HG1 1.7 359.9
S CF CG2 CH2 179.0 179.8
S CF CG2 HG2 359.0 0.3
N CK CB HB 56.1 304.9
CB CK N HK2 125.3 240.1
CB CK N HK1 234.8 120.1
CK N S CF 248.6 65.0
S N CK HN1 234.7 180.0
HK2 CK N HK1 109.4 240.0
HN1 N S CF 123.3 245.0
S N HN1 CK 135.0 180.0
HN1 N CK HK2 275.0 105.0
HN1 N CK HK1 165.6 225.0
HK2 CK CB HB 181.4 185.0
CB CK HK2 N 228.2 119.9
CB CK HK2 HK1 114.1 239.9
HK2 CK N HN1 275.0 105.0
N CK HK2 HK1 245.9 120.0
HK1 CK CB HB 290.9 65.0
CB CK HK1 N 131.8 240.0
CB CK HK1 HK2 245.9 120.0
HK1 CK N HN1 165.6 225.0
N CK HK1 HK2 114.1 240.0
S CF CG1 CG2 182.5 179.7
CG1 CF CG2 CH2 1.5 359.5
CG1 CF CG2 HG2 181.5 180.0
CH1 CG1 CF HG1 180.0 180.1
CF CG1 CH1 CI 359.9 359.9
CF CG1 CH1 HH1 179.9 180.0
S CF CG2 CG1 177.5 180.3
CG2 CF CG1 CH1 359.2 0.3
CG2 CF CG1 HG1 179.2 180.2
CH2 CG2 CF HG2 180.0 179.5
CF CG2 CH2 CI 358.8 0.5
CF CG2 CH2 HH2 178.7 180.3
CH1 CG1 CF CG2 359.2 0.3
CF CG1 CH1 HG1 180.0 179.9
CI CH1 CG1 HH1 180.0 180.0
CG1 CH1 CI CH2 0.4 0.0
CG1 CH1 CI NJ 180.1 179.9
HG1 CG1 CF CG2 179.2 180.2
CF CG1 HG1 CH1 180.0 180.1
HG1 CG1 CH1 CI 179.9 180.0
HG1 CG1 CH1 HH1 359.9 0.0
CF CG2 CH2 HG2 180.0 180.5
CH1 CI CH2 CG2 0.3 359.8
CI CH2 CG2 HH2 180.0 180.2
CG2 CH2 CI NJ 180.6 179.8
CF CG2 HG2 CH2 180.0 179.5
HG2 CG2 CH2 CI 178.8 180.0
HG2 CG2 CH2 HH2 358.7 359.8
CI CH1 CG1 HG1 179.9 180.0
CG1 CH1 CI HH1 180.0 180.0
CG2 CH2 CI CH1 0.3 359.8
CH1 CI CH2 HH2 180.3 180.0
CH2 CI CH1 NJ 180.2 180.1
CH1 CI NJ OE 180.5 0.1
CH1 CI NJ OF 0.6 180.0
HH1 CH1 CG1 HG1 359.9 0.0
CG1 CH1 HH1 CI 180.0 180.0
HH1 CH1 CI CH2 180.3 180.0
HH1 CH1 CI NJ 0.1 359.9
CI CH2 CG2 HG2 178.8 180.0
CG2 CH2 CI HH2 180.0 179.8
CH2 CI CH1 HH1 180.3 180.0
CH1 CI CH2 NJ 179.7 179.9
CH2 CI NJ OE 0.2 180.0
CH2 CI NJ OF 180.3 359.9
HH2 CH2 CG2 HG2 358.7 359.8
CG2 CH2 HH2 CI 180.0 180.2
HH2 CH2 CI NJ 0.6 0.1
NJ CI CH1 HH1 0.1 359.9
CH1 CI NJ CH2 180.3 180.1
NJ CI CH2 HH2 0.6 0.1
OE NJ CI OF 179.9 180.1
CI NJ OE OF 180.1 179.9
CI NJ OF OE 179.9 180.1