PDB Chemical Component TPX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TPX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C CA 1.525 1.507
C O 1.200 1.207
C H 1.103 1.079
CA CB 1.486 1.529
CA CD 1.492 1.530
CA HA 1.114 1.091
CB CC 1.507 1.507
CB CK 1.474 1.530
CB HB 1.115 1.091
CC OA 1.272 1.341
CC OB 1.251 1.208
CD CE 1.521 1.530
CD HD2 1.115 1.090
CD HD1 1.114 1.090
CE HE3 1.114 1.090
CE HE2 1.115 1.090
CE HE1 1.115 1.090
OA HOA 0.950 0.967
CK N 1.437 1.465
CK HK2 1.115 1.090
CK HK1 1.116 1.089
N S 1.675 1.656
N HN1 1.021 0.969
OC S 1.465 1.421
OD S 1.442 1.421
S CF 1.788 1.762
CF CG1 1.381 1.381
CF CG2 1.378 1.382
CG1 CH1 1.380 1.382
CG1 HG1 1.103 1.080
CG2 CH2 1.379 1.382
CG2 HG2 1.103 1.080
CH1 CI 1.383 1.382
CH1 HH1 1.103 1.080
CH2 CI 1.383 1.382
CH2 HH2 1.103 1.080
CI CJ 1.506 1.507
CJ HJ3 1.116 1.090
CJ HJ2 1.115 1.090
CJ HJ1 1.115 1.090

Bond Angles for TPX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA C O 123.6 120.0
CA C H 130.7 120.0
C CA CB 111.0 109.5
C CA CD 108.5 109.5
C CA HA 110.0 109.5
O C H 105.6 120.0
CB CA CD 112.0 109.5
CB CA HA 106.4 109.4
CA CB CC 110.7 109.5
CA CB CK 114.2 109.5
CA CB HB 105.7 109.4
CD CA HA 109.0 109.5
CA CD CE 113.8 109.5
CA CD HD2 110.6 109.4
CA CD HD1 110.6 109.5
CC CB CK 110.6 109.5
CC CB HB 109.6 109.5
CB CC OA 118.9 120.0
CB CC OB 120.5 120.0
CK CB HB 105.7 109.5
CB CK N 124.0 109.5
CB CK HK2 107.1 109.4
CB CK HK1 107.1 109.5
OA CC OB 120.6 120.0
CC OA HOA 118.9 120.0
CE CD HD2 110.7 109.5
CE CD HD1 110.7 109.5
CD CE HE3 113.8 109.5
CD CE HE2 110.6 109.5
CD CE HE1 110.6 109.4
HD2 CD HD1 99.7 109.5
HE3 CE HE2 110.7 109.5
HE3 CE HE1 110.6 109.4
HE2 CE HE1 99.6 109.5
N CK HK2 107.0 109.5
N CK HK1 107.1 109.4
CK N S 114.1 119.9
CK N HN1 110.5 120.0
HK2 CK HK1 102.6 109.5
S N HN1 110.5 120.0
N S OC 129.0 105.8
N S OD 97.9 105.8
N S CF 103.2 107.4
OC S OD 115.1 125.3
OC S CF 103.4 105.8
OD S CF 106.3 105.8
S CF CG1 118.6 120.0
S CF CG2 118.5 119.9
CG1 CF CG2 123.0 120.1
CF CG1 CH1 118.0 120.0
CF CG1 HG1 121.1 120.0
CF CG2 CH2 118.3 119.9
CF CG2 HG2 120.9 120.0
CH1 CG1 HG1 120.9 120.0
CG1 CH1 CI 119.9 120.0
CG1 CH1 HH1 119.9 120.0
CH2 CG2 HG2 120.8 120.0
CG2 CH2 CI 119.8 120.0
CG2 CH2 HH2 119.9 120.0
CI CH1 HH1 120.1 120.0
CH1 CI CH2 121.0 120.0
CH1 CI CJ 119.5 120.0
CI CH2 HH2 120.3 120.0
CH2 CI CJ 119.5 120.0
CI CJ HJ3 119.6 109.4
CI CJ HJ2 108.6 109.5
CI CJ HJ1 108.6 109.4
HJ3 CJ HJ2 108.5 109.5
HJ3 CJ HJ1 108.6 109.5
HJ2 CJ HJ1 101.3 109.5

Torsion Angles for TPX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O C CA H 180.0 180.0
CB CA C CD 123.4 120.1
CB CA C HA 242.6 240.0
C CA CB CC 183.6 180.0
C CA CB CK 58.0 60.0
C CA CB HB 302.2 300.0
CD CA C HA 119.2 120.0
C CA CD CE 311.5 300.0
C CA CD HD2 76.8 180.0
C CA CD HD1 186.3 60.0
CA C O H 180.0 180.0
O C CA CB 78.4 240.1
O C CA CD 315.0 120.0
O C CA HA 195.8 0.0
CA C H O 180.0 180.0
H C CA CB 258.4 60.1
H C CA CD 135.0 300.0
H C CA HA 15.8 180.0
CB CA C O 78.4 240.1
CB CA C H 258.4 60.1
C CA CB CD 238.6 240.0
C CA CB HA 119.6 120.0
CD CA CB HA 241.0 240.0
CB CA CD CE 188.7 179.9
CB CA CD HD2 314.0 59.9
CB CA CD HD1 63.4 299.9
CC CB CA CK 125.6 120.0
CC CB CA HB 241.4 240.0
CA CB CC OA 140.2 179.9
CA CB CC OB 320.1 360.0
CK CB CA HB 115.7 120.0
CA CB CK N 291.9 180.0
CA CB CK HK2 57.1 300.1
CA CB CK HK1 166.6 60.1
CD CA C O 315.0 120.0
CD CA C H 135.0 300.0
C CA CD CB 122.8 120.0
C CA CD HA 240.2 240.0
CB CA CD HA 117.4 120.0
CD CA CB CC 305.0 300.0
CD CA CB CK 179.4 180.0
CD CA CB HB 63.6 60.0
CE CD CA HD2 234.7 120.0
CE CD CA HD1 125.3 240.0
CA CD CE HE3 180.0 180.0
CA CD CE HE2 305.3 300.0
CA CD CE HE1 54.7 60.1
HD2 CD CA HD1 250.6 120.0
HA CA C O 195.8 0.0
HA CA C H 15.8 180.0
C CA HA CB 239.8 240.0
C CA HA CD 118.8 120.0
CB CA HA CD 239.1 240.0
HA CA CB CC 64.0 60.0
HA CA CB CK 298.4 300.0
HA CA CB HB 182.6 180.0
HA CA CD CE 71.3 60.0
HA CA CD HD2 196.6 300.0
HA CA CD HD1 306.0 180.0
CC CB CA CD 305.0 300.0
CC CB CA HA 64.0 60.0
CA CB CC CK 232.4 239.9
CA CB CC HB 116.2 120.0
CK CB CC HB 243.8 240.0
CC CB CK N 166.2 60.0
CC CB CK HK2 291.5 180.0
CC CB CK HK1 40.9 300.0
OA CC CB OB 180.1 179.9
CB CC OA HOA 179.9 180.0
CK CB CA CD 179.4 180.0
CK CB CA HA 298.4 300.0
CA CB CK CC 125.7 120.0
CA CB CK HB 244.3 240.0
CC CB CK HB 118.6 120.0
CK CB CC OA 267.8 300.0
CK CB CC OB 87.7 120.0
N CK CB HK2 234.8 240.0
N CK CB HK1 125.3 120.0
CB CK N S 301.0 180.0
CB CK N HN1 175.8 0.0
HK2 CK CB HK1 250.5 240.0
HB CB CA CD 63.6 60.0
HB CB CA HA 182.6 180.0
CA CB HB CC 240.6 240.0
CA CB HB CK 121.4 120.0
CC CB HB CK 240.8 240.0
HB CB CC OA 24.0 60.0
HB CB CC OB 203.9 240.0
HB CB CK N 47.6 300.0
HB CB CK HK2 172.9 60.0
HB CB CK HK1 282.4 180.0
OA CC CB CK 267.8 300.0
OA CC CB HB 24.0 60.0
CB CC OA OB 179.9 180.1
OB CC CB CK 87.7 120.0
OB CC CB HB 203.9 240.0
CB CC OB OA 180.1 179.9
OB CC OA HOA 0.0 359.9
CE CD CA HA 71.3 60.0
CA CD CE HD2 125.2 240.0
CA CD CE HD1 234.8 120.0
HD2 CD CE HD1 109.5 240.0
HE3 CE CD HE2 234.7 239.9
HE3 CE CD HE1 125.2 119.9
HE2 CE CD HE1 250.6 240.0
HD2 CD CA HA 196.6 300.0
CA CD HD2 CE 233.0 120.0
CA CD HD2 HD1 116.4 240.0
CE CD HD2 HD1 243.4 120.0
HD2 CD CE HE3 54.7 299.9
HD2 CD CE HE2 180.1 60.0
HD2 CD CE HE1 289.5 180.0
HD1 CD CA HA 306.0 180.0
CA CD HD1 CE 127.0 240.0
CA CD HD1 HD2 243.6 120.0
CE CD HD1 HD2 116.5 240.0
HD1 CD CE HE3 305.2 60.0
HD1 CD CE HE2 70.5 180.0
HD1 CD CE HE1 180.0 300.1
HE3 CE CD HD2 54.7 299.9
HE3 CE CD HD1 305.2 60.0
CD CE HE3 HE2 125.3 120.1
CD CE HE3 HE1 234.8 240.1
HE2 CE HE3 HE1 109.5 120.0
HE2 CE CD HD2 180.1 60.0
HE2 CE CD HD1 70.5 180.0
CD CE HE2 HE3 232.9 239.9
CD CE HE2 HE1 116.5 120.0
HE3 CE HE2 HE1 243.5 240.1
HE1 CE CD HD2 289.5 180.0
HE1 CE CD HD1 180.0 300.1
CD CE HE1 HE3 127.0 120.0
CD CE HE1 HE2 243.6 240.0
HE3 CE HE1 HE2 116.6 120.0
HOA OA CC OB 0.0 359.9
N CK CB HB 47.6 300.0
CB CK N HK2 125.3 120.0
CB CK N HK1 234.7 240.0
HK2 CK N HK1 109.4 120.1
S N CK HN1 125.2 179.9
CK N S OC 29.0 172.7
CK N S OD 160.5 307.4
CK N S CF 269.4 60.0
HK2 CK CB HB 172.9 60.0
CB CK HK2 N 225.1 240.0
CB CK HK2 HK1 112.6 120.0
N CK HK2 HK1 247.5 240.0
HK2 CK N S 175.8 60.0
HK2 CK N HN1 50.5 240.1
HK1 CK CB HB 282.4 180.0
CB CK HK1 N 134.9 120.0
CB CK HK1 HK2 247.4 240.0
N CK HK1 HK2 112.5 120.1
HK1 CK N S 66.3 300.0
HK1 CK N HN1 301.1 120.0
S N CK HK2 175.8 60.0
S N CK HK1 66.3 300.0
CK N S HN1 234.8 180.1
OC S N OD 228.5 225.3
OC S N CF 119.7 112.6
OD S N CF 251.2 247.4
N S CF CG1 273.8 90.0
N S CF CG2 93.9 269.7
HN1 N CK HK2 50.5 240.1
HN1 N CK HK1 301.1 120.0
CK N HN1 S 127.3 179.9
HN1 N S OC 154.3 352.6
HN1 N S OD 285.8 127.3
HN1 N S CF 34.6 240.0
OC S N HN1 154.3 352.6
N S OC OD 125.0 123.1
N S OC CF 240.4 246.2
OD S OC CF 115.4 123.1
OC S CF CG1 137.7 337.4
OC S CF CG2 317.8 157.1
OD S N HN1 285.8 127.3
N S OD OC 220.0 236.9
N S OD CF 106.2 113.8
OC S OD CF 246.3 236.9
OD S CF CG1 16.2 202.6
OD S CF CG2 196.3 22.3
CF S N HN1 34.6 240.0
N S CF OC 136.0 112.6
N S CF OD 257.6 247.3
OC S CF OD 121.6 134.7
CG1 CF S CG2 179.9 180.3
S CF CG1 CH1 179.9 180.0
S CF CG1 HG1 359.9 0.1
S CF CG2 CH2 180.0 179.8
S CF CG2 HG2 0.0 0.2
S CF CG1 CG2 180.1 179.7
CG1 CF CG2 CH2 0.1 359.5
CG1 CF CG2 HG2 180.1 179.9
CH1 CG1 CF HG1 180.0 179.9
CF CG1 CH1 CI 0.1 0.0
CF CG1 CH1 HH1 180.1 179.9
S CF CG2 CG1 179.9 180.3
CG2 CF CG1 CH1 359.9 0.3
CG2 CF CG1 HG1 179.9 180.3
CH2 CG2 CF HG2 180.0 179.6
CF CG2 CH2 CI 0.0 0.5
CF CG2 CH2 HH2 180.0 180.3
CH1 CG1 CF CG2 359.9 0.3
CF CG1 CH1 HG1 180.0 180.1
CI CH1 CG1 HH1 180.0 180.1
CG1 CH1 CI CH2 360.0 359.9
CG1 CH1 CI CJ 179.9 179.9
HG1 CG1 CF CG2 179.9 180.3
CF CG1 HG1 CH1 180.0 179.9
HG1 CG1 CH1 CI 180.1 179.9
HG1 CG1 CH1 HH1 0.1 359.8
CF CG2 CH2 HG2 180.0 180.4
CH1 CI CH2 CG2 360.0 359.8
CI CH2 CG2 HH2 180.0 180.2
CG2 CH2 CI CJ 180.0 179.9
CF CG2 HG2 CH2 180.0 179.6
HG2 CG2 CH2 CI 180.0 180.0
HG2 CG2 CH2 HH2 360.0 359.9
CI CH1 CG1 HG1 180.1 179.9
CG1 CH1 CI HH1 180.0 179.9
CG2 CH2 CI CH1 360.0 359.8
CH1 CI CH2 HH2 180.0 180.0
CH2 CI CH1 CJ 180.0 180.0
CH1 CI CJ HJ3 180.0 90.0
CH1 CI CJ HJ2 305.3 210.0
CH1 CI CJ HJ1 54.7 330.0
HH1 CH1 CG1 HG1 0.1 359.8
CG1 CH1 HH1 CI 180.0 180.1
HH1 CH1 CI CH2 180.0 180.0
HH1 CH1 CI CJ 359.9 0.0
CI CH2 CG2 HG2 180.0 180.0
CG2 CH2 CI HH2 180.0 179.8
CH2 CI CH1 HH1 180.0 180.0
CH1 CI CH2 CJ 180.0 180.0
CH2 CI CJ HJ3 360.0 269.9
CH2 CI CJ HJ2 125.2 30.0
CH2 CI CJ HJ1 234.7 150.0
HH2 CH2 CG2 HG2 360.0 359.9
CG2 CH2 HH2 CI 180.0 180.2
HH2 CH2 CI CJ 0.0 0.0
CJ CI CH1 HH1 359.9 0.0
CH1 CI CJ CH2 180.0 180.0
CJ CI CH2 HH2 0.0 0.0
HJ3 CJ CI HJ2 234.7 240.0
HJ3 CJ CI HJ1 125.3 119.9
HJ2 CJ CI HJ1 250.6 240.0
CI CJ HJ3 HJ2 125.3 120.0
CI CJ HJ3 HJ1 234.7 240.1
HJ2 CJ HJ3 HJ1 109.4 120.1
CI CJ HJ2 HJ3 228.5 240.0
CI CJ HJ2 HJ1 114.3 120.0
HJ3 CJ HJ2 HJ1 245.8 240.0
CI CJ HJ1 HJ3 131.5 119.9
CI CJ HJ1 HJ2 245.7 240.0
HJ3 CJ HJ1 HJ2 114.2 120.1