PDB Chemical Component TPW

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TPW

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 S1 1.737 1.713
S1 C5 1.733 1.702
C5 C4 1.392 1.364
C4 C4A 1.507 1.484
C5 C5A 1.509 1.503
C5A C5B 1.527 1.525
C5B O5G 1.410 1.417
O5G P1 1.608 1.619
P1 O11 1.617 1.616
P1 O12 1.506 1.618
P1 O13 1.500 1.501
O11 P2 1.612 1.616
P2 O21 1.505 1.616
P2 O22 1.505 1.500
P2 O23 1.509 1.615
C2A C2' 1.492 1.491
N1' C2' 1.374 1.346
C2' N3' 1.379 1.347
N3' C4' 1.388 1.349
C4' N4' 1.347 1.416
C35 C5' 1.518 1.518
C4' C5' 1.390 1.363
N1' C6' 1.381 1.350
C5' C6' 1.394 1.364
C35 C3 1.509 1.482
C2 C3 1.376 1.378
C4 C3 1.365 1.425
C2A H2A1 1.115 1.097
C2A H2A2 1.115 1.098
C2A H2A3 1.115 1.098
C35 H351 1.115 1.107
C35 H352 1.115 1.108
C2 H2 1.103 1.081
C5A H5A1 1.115 1.098
C5A H5A2 1.116 1.097
C4A H4A1 1.115 1.100
C4A H4A2 1.115 1.100
C4A H4A3 1.115 1.101
C5B H5B1 1.115 1.095
C5B H5B2 1.115 1.095
O12 H12 0.950 0.981
O21 H21 0.950 0.981
O23 H23 0.950 0.981
C6' H6' 1.103 1.086
N4' H4'1 1.020 0.997
N4' H4'2 1.020 0.997

Bond Angles for TPW

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C5 89.1 91.1
S1 C2 C3 112.7 112.1
S1 C2 H2 133.5 120.1
S1 C5 C4 112.7 113.4
S1 C5 C5A 117.4 118.4
C5 C4 C4A 123.0 124.6
C4 C5 C5A 129.8 128.2
C5 C4 C3 112.2 111.4
C4A C4 C3 124.8 124.0
C4 C4A H4A1 106.8 110.8
C4 C4A H4A2 106.8 111.7
C4 C4A H4A3 124.8 111.7
C5 C5A C5B 115.8 112.8
C5 C5A H5A1 109.9 109.5
C5 C5A H5A2 109.9 109.0
C5A C5B O5G 108.4 109.8
C5B C5A H5A1 109.9 109.6
C5B C5A H5A2 109.9 109.0
C5A C5B H5B1 112.6 109.8
C5A C5B H5B2 112.6 111.8
C5B O5G P1 121.0 120.0
O5G C5B H5B1 112.6 107.9
O5G C5B H5B2 112.6 108.8
O5G P1 O11 104.0 104.6
O5G P1 O12 113.4 104.4
O5G P1 O13 107.4 114.8
O11 P1 O12 106.7 103.2
O11 P1 O13 112.9 114.2
P1 O11 P2 126.5 131.0
O12 P1 O13 112.2 114.4
P1 O12 H12 113.4 118.9
O11 P2 O21 108.2 103.1
O11 P2 O22 110.3 114.6
O11 P2 O23 109.0 103.4
O21 P2 O22 111.2 115.2
O21 P2 O23 107.6 103.6
P2 O21 H21 108.2 119.0
O22 P2 O23 110.5 115.3
P2 O23 H23 109.0 119.0
C2A C2' N1' 120.1 116.5
C2A C2' N3' 120.1 116.5
C2' C2A H2A1 108.4 110.5
C2' C2A H2A2 108.4 111.3
C2' C2A H2A3 120.1 111.3
N1' C2' N3' 119.8 127.0
C2' N1' C6' 119.9 115.0
C2' N3' C4' 121.3 114.9
N3' C4' N4' 120.1 118.1
N3' C4' C5' 118.9 122.6
N4' C4' C5' 120.9 119.3
C4' N4' H4'1 108.1 118.9
C4' N4' H4'2 121.0 118.9
C35 C5' C4' 120.9 122.4
C35 C5' C6' 119.6 119.6
C5' C35 C3 111.4 114.2
C5' C35 H351 111.5 108.5
C5' C35 H352 111.5 108.4
C4' C5' C6' 119.5 118.0
N1' C6' C5' 120.6 122.6
N1' C6' H6' 119.2 114.8
C5' C6' H6' 120.2 122.7
C35 C3 C2 122.1 123.5
C35 C3 C4 124.7 124.5
C3 C35 H351 111.5 110.9
C3 C35 H352 111.5 110.9
C2 C3 C4 113.2 112.0
C3 C2 H2 113.7 127.9
H2A1 C2A H2A2 101.5 108.4
H2A1 C2A H2A3 108.4 108.4
H2A2 C2A H2A3 108.4 106.8
H351 C35 H352 98.9 103.3
H5A1 C5A H5A2 100.3 106.6
H4A1 C4A H4A2 102.8 108.1
H4A1 C4A H4A3 106.8 108.1
H4A2 C4A H4A3 106.8 106.4
H5B1 C5B H5B2 97.8 108.8
H4'1 N4' H4'2 108.1 121.9

Torsion Angles for TPW

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C5 C4 0.1 0.1
C2 S1 C5 C5A 178.4 180.0
C35 C3 C2 S1 179.7 180.0
S1 C2 C3 C4 359.9 0.1
C3 C2 S1 H2 180.0 179.9
C5 S1 C2 C3 0.0 359.9
C5 S1 C2 H2 180.0 180.0
S1 C5 C4 C4A 179.8 180.0
C4 C5 S1 C5A 181.6 180.0
S1 C5 C4 C3 359.8 360.0
S1 C5 C5A C5B 34.8 270.0
S1 C5 C5A H5A1 269.5 32.4
S1 C5 C5A H5A2 160.0 148.7
S1 C5 C4 C5A 178.1 180.0
C4A C4 C5 C3 180.0 180.0
C5 C4 C4A H4A1 234.7 151.7
C5 C4 C4A H4A2 125.2 272.2
C5 C4 C4A H4A3 360.0 31.2
C4 C5 C5A C5B 212.8 90.0
C4 C5 C5A H5A1 87.6 212.4
C4 C5 C5A H5A2 338.1 328.7
C35 C3 C4 C5 180.3 180.0
C2 C3 C4 C5 0.2 360.0
C4A C4 C5 C5A 1.7 0.0
C5 C4 C4A C3 180.0 180.0
C35 C3 C4 C4A 0.3 360.0
C2 C3 C4 C4A 180.2 180.0
H4A1 C4A C4 H4A2 109.5 239.5
H4A1 C4A C4 H4A3 234.8 120.5
H4A2 C4A C4 H4A3 125.3 241.0
S1 C5 C5A C4 182.0 180.0
C5A C5 C4 C4A 1.7 0.0
C5A C5 C4 C3 181.7 180.0
C5 C5A C5B O5G 173.7 61.6
C5B C5A C5 H5A1 125.2 237.6
C5B C5A C5 H5A2 234.7 121.3
C5 C5A C5B H5B1 48.4 180.0
C5 C5A C5B H5B2 298.9 300.8
H5A1 C5A C5 H5A2 109.5 243.7
C5 C5A C5B H5A1 234.8 122.3
C5 C5A C5B H5A2 125.3 238.7
C5A C5B O5G P1 98.1 180.0
O5G C5B C5A H5B1 125.3 241.6
O5G C5B C5A H5B2 234.7 120.8
H5A1 C5A C5B H5A2 250.5 116.4
H5B1 C5B C5A H5B2 109.5 239.2
O5G C5B C5A H5A1 298.9 299.3
O5G C5B C5A H5A2 48.4 182.9
C5A C5B O5G H5B1 234.7 119.5
C5A C5B O5G H5B2 125.3 237.4
C5B O5G P1 O11 66.0 54.1
C5B O5G P1 O12 310.4 306.0
C5B O5G P1 O13 185.8 180.0
H5B1 C5B O5G H5B2 250.5 117.8
P1 O5G C5B H5B1 223.4 60.5
P1 O5G C5B H5B2 332.8 302.7
O11 P1 O5G O12 115.6 108.1
O11 P1 O5G O13 240.1 234.1
O5G P1 O11 P2 88.3 66.3
O12 P1 O5G O13 124.6 126.0
O5G P1 O12 H12 180.0 279.8
O5G P1 O11 O12 239.8 251.0
O5G P1 O11 O13 116.1 126.2
O12 P1 O11 O13 236.3 235.2
O11 P1 O12 H12 66.1 170.7
P1 O11 P2 O21 237.3 173.9
P1 O11 P2 O22 359.1 299.9
P1 O11 P2 O23 120.5 66.3
O5G P1 O12 O11 114.0 109.1
O5G P1 O12 O13 238.1 233.8
O11 P1 O12 O13 124.1 124.7
O12 P1 O11 P2 208.5 175.3
O5G P1 O13 O11 245.9 239.3
O5G P1 O13 O12 125.3 120.7
O11 P1 O13 O12 239.4 241.4
O13 P1 O11 P2 332.2 300.1
O13 P1 O12 H12 302.0 46.0
P2 O11 P1 O12 208.5 175.3
P2 O11 P1 O13 332.2 300.1
O21 P2 O11 O22 238.2 234.0
O21 P2 O11 O23 116.7 107.6
O11 P2 O21 H21 180.0 174.1
O22 P2 O11 O23 238.6 233.6
O11 P2 O23 H23 180.0 185.2
O11 P2 O21 O22 121.2 125.6
O11 P2 O21 O23 242.4 252.5
O22 P2 O21 O23 121.1 126.9
O21 P2 O23 H23 62.9 77.9
O11 P2 O22 O21 240.0 240.6
O11 P2 O22 O23 120.6 119.9
O21 P2 O22 O23 240.5 239.4
O22 P2 O21 H21 58.7 48.4
O22 P2 O23 H23 301.3 311.1
O11 P2 O23 O21 117.1 107.3
O11 P2 O23 O22 238.7 234.1
O21 P2 O23 O22 121.6 126.8
O23 P2 O21 H21 297.6 281.6
N1' C2' C2A N3' 180.4 180.0
C2A C2' N1' C6' 180.3 179.9
C2A C2' N3' C4' 179.6 180.0
H2A1 C2A C2' H2A2 109.4 239.5
H2A1 C2A C2' H2A3 234.7 120.5
H2A2 C2A C2' H2A3 125.3 241.0
C2A C2' N1' N3' 179.6 180.0
N1' C2' C2A H2A1 54.7 180.1
N1' C2' C2A H2A2 305.3 300.7
N1' C2' C2A H2A3 180.0 59.6
N1' C2' N3' C4' 359.2 0.0
C2' N1' C6' C5' 359.5 0.0
C2' N1' C6' H6' 179.5 180.0
C2A C2' N3' N1' 180.4 180.0
N3' C2' C2A H2A1 234.3 0.1
N3' C2' C2A H2A2 124.9 120.6
N3' C2' C2A H2A3 359.6 239.6
N3' C2' N1' C6' 0.6 360.0
C2' N3' C4' N4' 180.2 179.9
C2' N3' C4' C5' 0.7 0.0
N4' C4' N3' C5' 179.5 179.9
N3' C4' N4' H4'1 235.2 330.4
N3' C4' N4' H4'2 0.5 156.6
C35 C5' C4' N3' 179.6 180.0
N3' C4' C5' C6' 359.5 359.9
N3' C4' N4' C5' 180.5 180.1
C35 C5' C4' N4' 0.0 0.1
N4' C4' C5' C6' 179.9 180.0
H4'1 N4' C4' H4'2 234.7 173.8
N3' C4' C5' C35 179.6 180.0
N4' C4' C5' C35 0.0 0.1
C4' C5' C35 C6' 179.9 180.0
N1' C6' C5' C35 180.4 180.0
C35 C5' C6' H6' 0.4 0.1
C5' C35 C3 C2 108.9 90.1
C5' C35 C3 C4 288.8 270.1
C3 C35 C5' H351 125.3 235.7
C3 C35 C5' H352 234.7 124.2
H351 C35 C5' H352 109.5 248.5
N3' C4' C5' N4' 179.5 179.9
C5' C4' N4' H4'1 54.7 150.3
C5' C4' N4' H4'2 180.0 336.5
C35 C5' C4' C6' 180.1 180.0
C4' C5' C35 C3 288.6 270.0
C4' C5' C35 H351 163.3 34.3
C4' C5' C35 H352 53.8 145.8
N1' C6' C5' C4' 0.5 0.0
C4' C5' C6' H6' 180.5 180.1
C6' N1' C2' N3' 0.6 360.0
C35 C5' C6' N1' 180.4 180.0
C4' C5' C6' N1' 0.5 0.0
C5' C6' N1' H6' 180.0 180.1
C35 C5' C6' C4' 179.9 180.0
C6' C5' C35 C3 108.7 90.0
C6' C5' C35 H351 343.4 214.3
C6' C5' C35 H352 233.9 325.8
N1' C6' C5' H6' 180.0 179.9
S1 C2 C3 C35 179.7 180.0
C5 C4 C3 C35 180.3 180.0
C4A C4 C3 C35 0.3 360.0
C3 C35 C5' C4' 288.6 270.0
C3 C35 C5' C6' 108.7 90.0
C5' C35 C3 H351 234.7 123.0
C5' C35 C3 H352 125.2 237.1
C2 C3 C35 C4 180.2 180.0
C35 C3 C2 H2 359.7 359.9
H351 C35 C3 H352 250.5 114.2
C3 C2 S1 C5 0.0 359.9
S1 C2 C3 H2 180.0 180.1
C5 C4 C3 C2 0.2 360.0
C4A C4 C3 C2 180.2 180.0
C35 C3 C2 C4 179.9 180.0
C2 C3 C35 H351 234.2 327.1
C2 C3 C35 H352 343.7 212.9
C5 C4 C3 C4A 180.0 180.0
C3 C4 C5 C5A 181.7 180.0
C3 C4 C4A H4A1 54.7 331.8
C3 C4 C4A H4A2 305.3 92.3
C3 C4 C4A H4A3 180.0 211.2
C35 C3 C4 C2 180.1 180.0
C4 C3 C35 H351 54.0 147.1
C4 C3 C35 H352 163.5 32.9
C4 C3 C2 H2 179.9 179.9
H2A1 C2A C2' N1' 54.7 180.1
H2A1 C2A C2' N3' 234.3 0.1
C2' C2A H2A1 H2A2 246.0 122.2
C2' C2A H2A1 H2A3 131.9 237.8
H2A2 C2A H2A1 H2A3 246.0 115.6
H2A2 C2A C2' N1' 305.3 300.7
H2A2 C2A C2' N3' 124.9 120.6
C2' C2A H2A2 H2A1 114.0 238.3
C2' C2A H2A2 H2A3 228.1 121.6
H2A1 C2A H2A2 H2A3 114.1 243.3
H2A3 C2A C2' N1' 180.0 59.6
H2A3 C2A C2' N3' 359.6 239.6
C2' C2A H2A3 H2A1 234.7 121.7
C2' C2A H2A3 H2A2 125.3 238.4
H2A1 C2A H2A3 H2A2 250.5 116.7
H351 C35 C5' C4' 163.3 34.3
H351 C35 C5' C6' 343.4 214.3
C5' C35 H351 C3 125.2 233.8
C5' C35 H351 H352 242.6 114.9
H351 C35 C3 C2 234.2 327.1
H351 C35 C3 C4 54.0 147.1
C3 C35 H351 H352 117.4 241.1
H352 C35 C5' C4' 53.8 145.8
H352 C35 C5' C6' 233.9 325.8
C5' C35 H352 C3 234.8 126.2
C5' C35 H352 H351 117.4 245.1
H352 C35 C3 C2 343.7 212.9
H352 C35 C3 C4 163.5 32.9
C3 C35 H352 H351 242.6 118.9
H2 C2 S1 C5 180.0 180.0
S1 C2 H2 C3 180.0 179.9
H2 C2 C3 C4 179.9 179.9
C5 C5A H5A1 C5B 128.5 235.7
C5 C5A H5A1 H5A2 244.2 117.8
H5A1 C5A C5B O5G 298.9 299.3
C5B C5A H5A1 H5A2 115.7 242.1
H5A1 C5A C5B H5B1 173.6 57.7
H5A1 C5A C5B H5B2 64.2 178.5
C5 C5A H5A2 C5B 231.5 123.6
C5 C5A H5A2 H5A1 115.7 241.9
H5A2 C5A C5B O5G 48.4 182.9
C5B C5A H5A2 H5A1 244.3 118.3
H5A2 C5A C5B H5B1 283.1 301.3
H5A2 C5A C5B H5B2 173.7 62.1
H4A1 C4A C4 C3 54.7 331.8
C4 C4A H4A1 H4A2 247.8 122.6
C4 C4A H4A1 H4A3 135.6 237.4
H4A2 C4A H4A1 H4A3 247.8 114.8
H4A2 C4A C4 C3 305.3 92.3
C4 C4A H4A2 H4A1 112.2 238.0
C4 C4A H4A2 H4A3 224.4 122.1
H4A1 C4A H4A2 H4A3 112.2 244.1
H4A3 C4A C4 C3 180.0 211.2
C4 C4A H4A3 H4A1 234.7 122.1
C4 C4A H4A3 H4A2 125.3 237.9
H4A1 C4A H4A3 H4A2 250.5 115.9
C5A C5B H5B1 O5G 123.0 240.5
H5B1 C5B C5A H5A1 173.6 57.7
H5B1 C5B C5A H5A2 283.1 301.3
C5A C5B H5B1 H5B2 241.5 122.6
H5B1 C5B O5G P1 223.4 60.5
O5G C5B H5B1 H5B2 118.5 242.2
C5A C5B H5B2 O5G 237.0 121.4
H5B2 C5B C5A H5A1 64.2 178.5
H5B2 C5B C5A H5A2 173.7 62.1
C5A C5B H5B2 H5B1 118.5 238.6
H5B2 C5B O5G P1 332.8 302.7
O5G C5B H5B2 H5B1 241.5 117.2
H12 O12 P1 O13 302.0 46.0
H21 O21 P2 O22 58.7 48.4
H21 O21 P2 O23 297.6 281.6
N1' C6' H6' C5' 180.0 180.1
H4'1 N4' C4' C5' 54.7 150.3
C4' N4' H4'1 H4'2 132.6 186.4
H4'2 N4' C4' C5' 180.0 336.5
C4' N4' H4'2 H4'1 234.7 173.6