PDB Chemical Component TPT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TPT
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
PT1 |
N1 |
2.030 |
|
PT1 |
N2 |
2.003 |
|
PT1 |
N3 |
2.052 |
|
N1 |
C1 |
1.355 |
|
N1 |
C5 |
1.375 |
|
N2 |
C6 |
1.241 |
|
N2 |
C10 |
1.391 |
|
N3 |
C11 |
1.333 |
|
N3 |
C15 |
1.368 |
|
C1 |
C2 |
1.363 |
|
C1 |
H1 |
1.080 |
|
C2 |
C3 |
1.408 |
|
C2 |
H2 |
1.080 |
|
C3 |
C4 |
1.374 |
|
C3 |
H3 |
1.080 |
|
C4 |
C5 |
1.394 |
|
C4 |
H4 |
1.080 |
|
C5 |
C6 |
1.467 |
|
C6 |
C7 |
1.431 |
|
C7 |
C8 |
1.381 |
|
C7 |
H7 |
1.081 |
|
C8 |
C9 |
1.399 |
|
C8 |
H8 |
1.080 |
|
C9 |
C10 |
1.370 |
|
C9 |
H9 |
1.081 |
|
C10 |
C11 |
1.498 |
|
C11 |
C12 |
1.388 |
|
C12 |
C13 |
1.413 |
|
C12 |
H12 |
1.080 |
|
C13 |
C14 |
1.418 |
|
C13 |
H13 |
1.080 |
|
C14 |
C15 |
1.361 |
|
C14 |
H14 |
1.080 |
|
C15 |
H15 |
1.079 |
|
PT1 |
CL1 |
|
|
Bond Angles for TPT
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N1 |
PT1 |
N2 |
78.5 |
|
N1 |
PT1 |
N3 |
159.6 |
|
PT1 |
N1 |
C1 |
127.0 |
|
PT1 |
N1 |
C5 |
111.6 |
|
N1 |
PT1 |
CL1 |
|
|
N2 |
PT1 |
N3 |
81.4 |
|
PT1 |
N2 |
C6 |
121.0 |
|
PT1 |
N2 |
C10 |
112.6 |
|
N2 |
PT1 |
CL1 |
|
|
PT1 |
N3 |
C11 |
115.8 |
|
PT1 |
N3 |
C15 |
127.8 |
|
N3 |
PT1 |
CL1 |
|
|
C1 |
N1 |
C5 |
120.9 |
|
N1 |
C1 |
C2 |
120.9 |
|
N1 |
C1 |
H1 |
119.6 |
|
N1 |
C5 |
C4 |
118.4 |
|
N1 |
C5 |
C6 |
117.0 |
|
C6 |
N2 |
C10 |
126.1 |
|
N2 |
C6 |
C5 |
111.8 |
|
N2 |
C6 |
C7 |
121.9 |
|
N2 |
C10 |
C9 |
115.6 |
|
N2 |
C10 |
C11 |
117.0 |
|
C11 |
N3 |
C15 |
115.8 |
|
N3 |
C11 |
C10 |
112.6 |
|
N3 |
C11 |
C12 |
124.4 |
|
N3 |
C15 |
C14 |
123.9 |
|
N3 |
C15 |
H15 |
118.1 |
|
C2 |
C1 |
H1 |
119.6 |
|
C1 |
C2 |
C3 |
120.2 |
|
C1 |
C2 |
H2 |
119.9 |
|
C3 |
C2 |
H2 |
119.9 |
|
C2 |
C3 |
C4 |
117.9 |
|
C2 |
C3 |
H3 |
121.1 |
|
C4 |
C3 |
H3 |
121.0 |
|
C3 |
C4 |
C5 |
121.5 |
|
C3 |
C4 |
H4 |
119.2 |
|
C5 |
C4 |
H4 |
119.3 |
|
C4 |
C5 |
C6 |
124.6 |
|
C5 |
C6 |
C7 |
126.3 |
|
C6 |
C7 |
C8 |
113.4 |
|
C6 |
C7 |
H7 |
123.3 |
|
C8 |
C7 |
H7 |
123.3 |
|
C7 |
C8 |
C9 |
123.8 |
|
C7 |
C8 |
H8 |
118.1 |
|
C9 |
C8 |
H8 |
118.1 |
|
C8 |
C9 |
C10 |
118.4 |
|
C8 |
C9 |
H9 |
120.8 |
|
C10 |
C9 |
H9 |
120.8 |
|
C9 |
C10 |
C11 |
126.0 |
|
C10 |
C11 |
C12 |
122.4 |
|
C11 |
C12 |
C13 |
118.0 |
|
C11 |
C12 |
H12 |
121.0 |
|
C13 |
C12 |
H12 |
121.0 |
|
C12 |
C13 |
C14 |
117.0 |
|
C12 |
C13 |
H13 |
121.5 |
|
C14 |
C13 |
H13 |
121.5 |
|
C13 |
C14 |
C15 |
119.4 |
|
C13 |
C14 |
H14 |
120.3 |
|
C15 |
C14 |
H14 |
120.3 |
|
C14 |
C15 |
H15 |
118.1 |
|
Torsion Angles for TPT
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N2 |
PT1 |
N1 |
N3 |
349.9 |
|
N1 |
PT1 |
N2 |
C6 |
357.6 |
|
N1 |
PT1 |
N2 |
C10 |
183.5 |
|
N2 |
PT1 |
N1 |
CL1 |
|
|
N1 |
PT1 |
N3 |
C11 |
344.5 |
|
N1 |
PT1 |
N3 |
C15 |
173.7 |
|
N3 |
PT1 |
N1 |
CL1 |
|
|
C1 |
N1 |
PT1 |
C5 |
171.3 |
|
PT1 |
N1 |
C1 |
C2 |
184.2 |
|
PT1 |
N1 |
C1 |
H1 |
4.2 |
|
PT1 |
N1 |
C5 |
C4 |
175.9 |
|
PT1 |
N1 |
C5 |
C6 |
357.2 |
|
N1 |
PT1 |
N2 |
N3 |
176.5 |
|
N2 |
PT1 |
N1 |
C1 |
173.9 |
|
N2 |
PT1 |
N1 |
C5 |
2.6 |
|
N1 |
PT1 |
N2 |
CL1 |
|
|
N2 |
PT1 |
N3 |
C11 |
354.4 |
|
N2 |
PT1 |
N3 |
C15 |
183.7 |
|
N3 |
PT1 |
N2 |
CL1 |
|
|
C6 |
N2 |
PT1 |
C10 |
174.1 |
|
PT1 |
N2 |
C6 |
C5 |
1.5 |
|
PT1 |
N2 |
C6 |
C7 |
180.6 |
|
PT1 |
N2 |
C10 |
C9 |
185.0 |
|
PT1 |
N2 |
C10 |
C11 |
352.2 |
|
N1 |
PT1 |
N3 |
N2 |
350.0 |
|
N3 |
PT1 |
N1 |
C1 |
184.0 |
|
N3 |
PT1 |
N1 |
C5 |
12.7 |
|
N1 |
PT1 |
N3 |
CL1 |
|
|
N3 |
PT1 |
N2 |
C6 |
181.1 |
|
N3 |
PT1 |
N2 |
C10 |
7.0 |
|
N2 |
PT1 |
N3 |
CL1 |
|
|
C11 |
N3 |
PT1 |
C15 |
170.7 |
|
PT1 |
N3 |
C11 |
C10 |
2.9 |
|
PT1 |
N3 |
C11 |
C12 |
173.8 |
|
PT1 |
N3 |
C15 |
C14 |
180.3 |
|
PT1 |
N3 |
C15 |
H15 |
0.3 |
|
C1 |
N1 |
PT1 |
N2 |
173.9 |
|
C1 |
N1 |
PT1 |
N3 |
184.0 |
|
PT1 |
N1 |
C1 |
C5 |
189.4 |
|
C1 |
N1 |
PT1 |
CL1 |
|
|
C1 |
N1 |
C5 |
C4 |
4.0 |
|
C1 |
N1 |
C5 |
C6 |
185.3 |
|
C2 |
C1 |
N1 |
H1 |
180.0 |
|
N1 |
C1 |
C2 |
C3 |
1.9 |
|
N1 |
C1 |
C2 |
H2 |
181.9 |
|
C5 |
N1 |
PT1 |
N2 |
2.6 |
|
C5 |
N1 |
PT1 |
N3 |
12.7 |
|
PT1 |
N1 |
C5 |
C1 |
171.9 |
|
C5 |
N1 |
PT1 |
CL1 |
|
|
C5 |
N1 |
C1 |
C2 |
354.8 |
|
C5 |
N1 |
C1 |
H1 |
174.8 |
|
N2 |
C6 |
C5 |
N1 |
0.9 |
|
C3 |
C4 |
C5 |
N1 |
0.5 |
|
N1 |
C5 |
C4 |
H4 |
180.5 |
|
C4 |
C5 |
N1 |
C6 |
178.7 |
|
N1 |
C5 |
C6 |
C7 |
181.9 |
|
C6 |
N2 |
PT1 |
N3 |
181.1 |
|
PT1 |
N2 |
C6 |
C10 |
186.8 |
|
C6 |
N2 |
PT1 |
CL1 |
|
|
N1 |
C5 |
C6 |
N2 |
0.9 |
|
C6 |
N2 |
C10 |
C9 |
11.3 |
|
C6 |
N2 |
C10 |
C11 |
178.5 |
|
C4 |
C5 |
C6 |
N2 |
182.4 |
|
C5 |
C6 |
N2 |
C7 |
180.9 |
|
N2 |
C6 |
C7 |
C8 |
358.9 |
|
N2 |
C6 |
C7 |
H7 |
178.8 |
|
C10 |
N2 |
PT1 |
N3 |
7.0 |
|
PT1 |
N2 |
C10 |
C6 |
173.7 |
|
C10 |
N2 |
PT1 |
CL1 |
|
|
C10 |
N2 |
C6 |
C5 |
174.8 |
|
C10 |
N2 |
C6 |
C7 |
353.9 |
|
N3 |
C11 |
C10 |
N2 |
3.3 |
|
C8 |
C9 |
C10 |
N2 |
351.2 |
|
N2 |
C10 |
C9 |
H9 |
171.2 |
|
C9 |
C10 |
N2 |
C11 |
192.8 |
|
N2 |
C10 |
C11 |
C12 |
192.1 |
|
PT1 |
N3 |
C11 |
C15 |
188.1 |
|
C11 |
N3 |
PT1 |
CL1 |
|
|
N2 |
C10 |
C11 |
N3 |
3.3 |
|
C11 |
N3 |
C15 |
C14 |
9.6 |
|
C11 |
N3 |
C15 |
H15 |
189.6 |
|
C9 |
C10 |
C11 |
N3 |
169.0 |
|
C10 |
C11 |
N3 |
C12 |
189.0 |
|
N3 |
C11 |
C12 |
C13 |
14.0 |
|
N3 |
C11 |
C12 |
H12 |
194.0 |
|
PT1 |
N3 |
C15 |
C11 |
170.7 |
|
C15 |
N3 |
PT1 |
CL1 |
|
|
C15 |
N3 |
C11 |
C10 |
174.7 |
|
C15 |
N3 |
C11 |
C12 |
345.7 |
|
C13 |
C14 |
C15 |
N3 |
355.1 |
|
N3 |
C15 |
C14 |
H14 |
175.0 |
|
C14 |
C15 |
N3 |
H15 |
180.0 |
|
C2 |
C1 |
N1 |
C5 |
354.8 |
|
N1 |
C1 |
C2 |
H1 |
180.0 |
|
C3 |
C2 |
C1 |
H2 |
180.0 |
|
C1 |
C2 |
C3 |
C4 |
2.4 |
|
C1 |
C2 |
C3 |
H3 |
182.4 |
|
H1 |
C1 |
N1 |
C5 |
174.8 |
|
N1 |
C1 |
H1 |
C2 |
180.0 |
|
H1 |
C1 |
C2 |
C3 |
182.0 |
|
H1 |
C1 |
C2 |
H2 |
1.9 |
|
C3 |
C2 |
C1 |
H1 |
182.0 |
|
C1 |
C2 |
C3 |
H2 |
180.0 |
|
C4 |
C3 |
C2 |
H3 |
180.0 |
|
C2 |
C3 |
C4 |
C5 |
356.4 |
|
C2 |
C3 |
C4 |
H4 |
176.4 |
|
H2 |
C2 |
C1 |
H1 |
1.9 |
|
C1 |
C2 |
H2 |
C3 |
180.0 |
|
H2 |
C2 |
C3 |
C4 |
182.4 |
|
H2 |
C2 |
C3 |
H3 |
2.4 |
|
N1 |
C5 |
C4 |
C3 |
0.5 |
|
C4 |
C3 |
C2 |
H2 |
182.4 |
|
C2 |
C3 |
C4 |
H3 |
180.0 |
|
C5 |
C4 |
C3 |
H4 |
180.0 |
|
C3 |
C4 |
C5 |
C6 |
179.0 |
|
H3 |
C3 |
C2 |
H2 |
2.4 |
|
C2 |
C3 |
H3 |
C4 |
180.0 |
|
H3 |
C3 |
C4 |
C5 |
176.4 |
|
H3 |
C3 |
C4 |
H4 |
356.4 |
|
N1 |
C5 |
C4 |
C6 |
181.5 |
|
N2 |
C6 |
C5 |
C4 |
182.4 |
|
C5 |
C4 |
C3 |
H3 |
176.4 |
|
C3 |
C4 |
C5 |
H4 |
180.0 |
|
C4 |
C5 |
C6 |
C7 |
3.3 |
|
H4 |
C4 |
C3 |
H3 |
356.4 |
|
C3 |
C4 |
H4 |
C5 |
180.0 |
|
H4 |
C4 |
C5 |
C6 |
359.0 |
|
N1 |
C5 |
C6 |
C4 |
178.6 |
|
C5 |
C6 |
N2 |
C10 |
174.8 |
|
N2 |
C6 |
C5 |
C7 |
179.1 |
|
C6 |
C5 |
C4 |
H4 |
359.0 |
|
C5 |
C6 |
C7 |
C8 |
177.8 |
|
C5 |
C6 |
C7 |
H7 |
357.8 |
|
C7 |
C6 |
N2 |
C10 |
353.9 |
|
N2 |
C6 |
C7 |
C5 |
181.0 |
|
C8 |
C7 |
C6 |
H7 |
180.0 |
|
C6 |
C7 |
C8 |
C9 |
2.7 |
|
C6 |
C7 |
C8 |
H8 |
182.7 |
|
C6 |
C7 |
C8 |
H7 |
180.0 |
|
C9 |
C8 |
C7 |
H8 |
180.0 |
|
C7 |
C8 |
C9 |
C10 |
2.5 |
|
C7 |
C8 |
C9 |
H9 |
182.5 |
|
C6 |
C7 |
H7 |
C8 |
180.0 |
|
H7 |
C7 |
C8 |
C9 |
182.8 |
|
H7 |
C7 |
C8 |
H8 |
2.7 |
|
N2 |
C10 |
C9 |
C8 |
351.2 |
|
C9 |
C8 |
C7 |
H7 |
182.8 |
|
C7 |
C8 |
C9 |
H8 |
180.0 |
|
C10 |
C9 |
C8 |
H9 |
180.0 |
|
C8 |
C9 |
C10 |
C11 |
185.2 |
|
H8 |
C8 |
C7 |
H7 |
2.7 |
|
C7 |
C8 |
H8 |
C9 |
180.0 |
|
H8 |
C8 |
C9 |
C10 |
182.5 |
|
H8 |
C8 |
C9 |
H9 |
2.5 |
|
N2 |
C10 |
C9 |
C11 |
165.9 |
|
N3 |
C11 |
C10 |
C9 |
169.0 |
|
C10 |
C9 |
C8 |
H8 |
182.5 |
|
C8 |
C9 |
C10 |
H9 |
180.0 |
|
C9 |
C10 |
C11 |
C12 |
357.8 |
|
H9 |
C9 |
C8 |
H8 |
2.5 |
|
C8 |
C9 |
H9 |
C10 |
180.0 |
|
H9 |
C9 |
C10 |
C11 |
5.2 |
|
N2 |
C10 |
C11 |
C9 |
194.3 |
|
C10 |
C11 |
N3 |
C15 |
174.7 |
|
N3 |
C11 |
C10 |
C12 |
171.2 |
|
C11 |
C10 |
C9 |
H9 |
5.2 |
|
C10 |
C11 |
C12 |
C13 |
184.1 |
|
C10 |
C11 |
C12 |
H12 |
4.1 |
|
C12 |
C11 |
N3 |
C15 |
345.7 |
|
N3 |
C11 |
C12 |
C10 |
189.9 |
|
C13 |
C12 |
C11 |
H12 |
180.0 |
|
C11 |
C12 |
C13 |
C14 |
352.0 |
|
C11 |
C12 |
C13 |
H13 |
172.0 |
|
C11 |
C12 |
C13 |
H12 |
180.0 |
|
C14 |
C13 |
C12 |
H13 |
180.0 |
|
C12 |
C13 |
C14 |
C15 |
4.0 |
|
C12 |
C13 |
C14 |
H14 |
184.0 |
|
C11 |
C12 |
H12 |
C13 |
180.0 |
|
H12 |
C12 |
C13 |
C14 |
172.0 |
|
H12 |
C12 |
C13 |
H13 |
352.0 |
|
N3 |
C15 |
C14 |
C13 |
355.1 |
|
C14 |
C13 |
C12 |
H12 |
172.0 |
|
C12 |
C13 |
C14 |
H13 |
180.0 |
|
C15 |
C14 |
C13 |
H14 |
180.0 |
|
C13 |
C14 |
C15 |
H15 |
175.1 |
|
H13 |
C13 |
C12 |
H12 |
352.0 |
|
C12 |
C13 |
H13 |
C14 |
180.0 |
|
H13 |
C13 |
C14 |
C15 |
184.0 |
|
H13 |
C13 |
C14 |
H14 |
4.0 |
|
N3 |
C15 |
C14 |
H15 |
180.0 |
|
C15 |
C14 |
C13 |
H13 |
184.0 |
|
C13 |
C14 |
C15 |
H14 |
180.0 |
|
H14 |
C14 |
C13 |
H13 |
4.0 |
|
C13 |
C14 |
H14 |
C15 |
180.0 |
|
H14 |
C14 |
C15 |
H15 |
355.1 |
|
N3 |
C15 |
H15 |
C14 |
180.0 |
|
H15 |
C15 |
C14 |
H14 |
355.1 |
|
N1 |
PT1 |
CL1 |
N2 |
|
|
N1 |
PT1 |
CL1 |
N3 |
|
|
CL1 |
PT1 |
N1 |
C1 |
|
|
CL1 |
PT1 |
N1 |
C5 |
|
|
N2 |
PT1 |
CL1 |
N3 |
|
|
CL1 |
PT1 |
N2 |
C6 |
|
|
CL1 |
PT1 |
N2 |
C10 |
|
|
CL1 |
PT1 |
N3 |
C11 |
|
|
CL1 |
PT1 |
N3 |
C15 |
|
|