PDB Chemical Component TPQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TPQ
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CA |
1.457 |
1.462 |
N |
H |
1.020 |
0.996 |
N |
H2 |
1.021 |
0.996 |
CA |
CB |
1.527 |
1.533 |
CA |
C |
1.521 |
1.520 |
CA |
HA |
1.099 |
1.097 |
CB |
C1 |
1.509 |
1.497 |
CB |
HB2 |
1.091 |
1.097 |
CB |
HB3 |
1.093 |
1.096 |
C |
O |
1.231 |
1.223 |
C |
OXT |
|
1.359 |
OXT |
HXT |
|
0.981 |
C1 |
C2 |
1.488 |
1.487 |
C1 |
C6 |
1.396 |
1.338 |
C2 |
O2 |
1.331 |
1.227 |
C2 |
C3 |
1.391 |
1.479 |
C3 |
C4 |
1.397 |
1.336 |
C3 |
H3 |
1.082 |
1.085 |
C4 |
O4 |
1.328 |
1.379 |
C4 |
C5 |
1.483 |
1.480 |
O4 |
HO4 |
0.949 |
0.963 |
C5 |
O5 |
1.336 |
1.227 |
C5 |
C6 |
1.390 |
1.478 |
C6 |
H6 |
1.079 |
1.085 |
Bond Angles for TPQ
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
H |
114.3 |
118.0 |
CA |
N |
H2 |
110.5 |
118.0 |
N |
CA |
CB |
114.3 |
110.2 |
N |
CA |
C |
112.0 |
106.3 |
N |
CA |
HA |
109.5 |
109.6 |
H |
N |
H2 |
110.4 |
122.6 |
CB |
CA |
C |
104.7 |
112.9 |
CB |
CA |
HA |
107.9 |
109.5 |
CA |
CB |
C1 |
114.5 |
112.2 |
CA |
CB |
HB2 |
108.6 |
111.1 |
CA |
CB |
HB3 |
109.1 |
110.3 |
C |
CA |
HA |
108.1 |
108.3 |
CA |
C |
O |
114.7 |
125.2 |
CA |
C |
OXT |
|
112.0 |
C1 |
CB |
HB2 |
108.4 |
108.6 |
C1 |
CB |
HB3 |
108.8 |
107.6 |
CB |
C1 |
C2 |
119.9 |
117.3 |
CB |
C1 |
C6 |
119.9 |
122.8 |
HB2 |
CB |
HB3 |
107.2 |
106.9 |
O |
C |
OXT |
|
122.8 |
C |
OXT |
HXT |
|
114.8 |
C2 |
C1 |
C6 |
120.2 |
120.0 |
C1 |
C2 |
O2 |
119.8 |
122.0 |
C1 |
C2 |
C3 |
119.5 |
117.7 |
C1 |
C6 |
C5 |
120.3 |
122.3 |
C1 |
C6 |
H6 |
120.2 |
121.2 |
O2 |
C2 |
C3 |
120.8 |
120.3 |
C2 |
C3 |
C4 |
120.0 |
121.9 |
C2 |
C3 |
H3 |
119.7 |
116.8 |
C4 |
C3 |
H3 |
120.2 |
121.3 |
C3 |
C4 |
O4 |
121.2 |
122.6 |
C3 |
C4 |
C5 |
120.5 |
120.6 |
O4 |
C4 |
C5 |
118.3 |
116.8 |
C4 |
O4 |
HO4 |
121.2 |
109.9 |
C4 |
C5 |
O5 |
120.0 |
121.8 |
C4 |
C5 |
C6 |
119.4 |
117.5 |
O5 |
C5 |
C6 |
120.6 |
120.7 |
C5 |
C6 |
H6 |
119.5 |
116.5 |
Torsion Angles for TPQ
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H |
N |
CA |
H2 |
125.3 |
166.7 |
CB |
CA |
N |
C |
241.1 |
237.4 |
CB |
CA |
N |
HA |
121.1 |
120.5 |
N |
CA |
CB |
C1 |
312.3 |
179.3 |
N |
CA |
CB |
HB2 |
191.1 |
57.5 |
N |
CA |
CB |
HB3 |
74.5 |
299.2 |
C |
CA |
N |
HA |
240.1 |
243.1 |
N |
CA |
C |
O |
323.5 |
327.8 |
N |
CA |
C |
OXT |
|
147.5 |
CA |
N |
H |
H2 |
234.7 |
194.0 |
H |
N |
CA |
CB |
180.0 |
208.5 |
H |
N |
CA |
C |
298.9 |
331.1 |
H |
N |
CA |
HA |
58.8 |
88.0 |
CA |
N |
H2 |
H |
127.4 |
166.0 |
H2 |
N |
CA |
CB |
54.7 |
41.9 |
H2 |
N |
CA |
C |
173.6 |
164.4 |
H2 |
N |
CA |
HA |
293.6 |
281.3 |
CB |
CA |
N |
H |
180.0 |
208.5 |
CB |
CA |
N |
H2 |
54.7 |
41.9 |
N |
CA |
CB |
C |
122.9 |
118.6 |
N |
CA |
CB |
HA |
237.9 |
239.4 |
C |
CA |
CB |
HA |
115.0 |
120.7 |
CB |
CA |
C |
O |
87.9 |
88.6 |
CB |
CA |
C |
OXT |
|
268.4 |
C1 |
CB |
CA |
HB2 |
121.3 |
121.8 |
C1 |
CB |
CA |
HB3 |
237.8 |
240.1 |
CA |
CB |
C1 |
C2 |
279.6 |
86.8 |
CA |
CB |
C1 |
C6 |
100.9 |
266.8 |
HB2 |
CB |
CA |
HB3 |
116.6 |
118.4 |
C |
CA |
N |
H |
298.9 |
331.1 |
C |
CA |
N |
H2 |
173.6 |
164.4 |
N |
CA |
C |
CB |
235.6 |
239.1 |
N |
CA |
C |
HA |
120.8 |
117.8 |
CB |
CA |
C |
HA |
245.2 |
238.6 |
C |
CA |
CB |
C1 |
189.4 |
60.7 |
C |
CA |
CB |
HB2 |
68.1 |
298.9 |
C |
CA |
CB |
HB3 |
311.6 |
180.6 |
O |
C |
CA |
OXT |
|
180.2 |
CA |
C |
OXT |
HXT |
|
180.2 |
HA |
CA |
N |
H |
58.8 |
88.0 |
HA |
CA |
N |
H2 |
293.6 |
281.3 |
N |
CA |
HA |
CB |
125.0 |
121.0 |
N |
CA |
HA |
C |
237.7 |
244.4 |
CB |
CA |
HA |
C |
112.8 |
123.4 |
HA |
CA |
CB |
C1 |
74.4 |
300.0 |
HA |
CA |
CB |
HB2 |
313.1 |
178.2 |
HA |
CA |
CB |
HB3 |
196.6 |
59.8 |
HA |
CA |
C |
O |
202.7 |
210.0 |
HA |
CA |
C |
OXT |
|
29.8 |
C1 |
CB |
CA |
C |
189.4 |
60.7 |
C1 |
CB |
CA |
HA |
74.4 |
300.0 |
CA |
CB |
C1 |
HB2 |
238.6 |
236.8 |
CA |
CB |
C1 |
HB3 |
122.3 |
121.4 |
HB2 |
CB |
C1 |
HB3 |
243.7 |
244.6 |
C2 |
C1 |
CB |
C6 |
178.7 |
180.0 |
CB |
C1 |
C2 |
O2 |
1.5 |
0.1 |
CB |
C1 |
C2 |
C3 |
180.8 |
180.1 |
CB |
C1 |
C6 |
C5 |
179.3 |
180.0 |
CB |
C1 |
C6 |
H6 |
359.4 |
360.0 |
HB2 |
CB |
CA |
C |
68.1 |
298.9 |
HB2 |
CB |
CA |
HA |
313.1 |
178.2 |
CA |
CB |
HB2 |
C1 |
125.0 |
123.8 |
CA |
CB |
HB2 |
HB3 |
242.3 |
239.6 |
C1 |
CB |
HB2 |
HB3 |
117.3 |
115.8 |
HB2 |
CB |
C1 |
C2 |
41.0 |
210.0 |
HB2 |
CB |
C1 |
C6 |
222.3 |
30.0 |
HB3 |
CB |
CA |
C |
311.6 |
180.6 |
HB3 |
CB |
CA |
HA |
196.6 |
59.8 |
CA |
CB |
HB3 |
C1 |
234.4 |
237.4 |
CA |
CB |
HB3 |
HB2 |
117.4 |
120.9 |
C1 |
CB |
HB3 |
HB2 |
243.0 |
243.5 |
HB3 |
CB |
C1 |
C2 |
157.3 |
325.4 |
HB3 |
CB |
C1 |
C6 |
338.6 |
145.4 |
O |
C |
CA |
HA |
202.7 |
210.0 |
CA |
C |
O |
OXT |
|
179.7 |
O |
C |
OXT |
HXT |
|
0.0 |
OXT |
C |
CA |
HA |
|
29.8 |
CA |
C |
OXT |
O |
|
180.2 |
C2 |
C1 |
CB |
HB2 |
41.0 |
210.0 |
C2 |
C1 |
CB |
HB3 |
157.3 |
325.4 |
CB |
C1 |
C2 |
C6 |
181.3 |
180.0 |
C2 |
C1 |
C6 |
C5 |
0.6 |
0.0 |
C2 |
C1 |
C6 |
H6 |
180.7 |
179.9 |
O2 |
C2 |
C1 |
C3 |
180.7 |
180.0 |
C1 |
C2 |
C3 |
C4 |
0.1 |
359.8 |
C1 |
C2 |
C3 |
H3 |
180.7 |
179.9 |
C6 |
C1 |
CB |
HB2 |
222.3 |
30.0 |
C6 |
C1 |
CB |
HB3 |
338.6 |
145.4 |
CB |
C1 |
C6 |
C2 |
178.7 |
180.0 |
C6 |
C1 |
C2 |
O2 |
180.2 |
180.2 |
C6 |
C1 |
C2 |
C3 |
359.5 |
0.2 |
C4 |
C5 |
C6 |
C1 |
359.7 |
359.8 |
O5 |
C5 |
C6 |
C1 |
179.6 |
179.8 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.1 |
O2 |
C2 |
C1 |
C6 |
180.2 |
180.2 |
C1 |
C2 |
O2 |
C3 |
179.3 |
180.0 |
O2 |
C2 |
C3 |
C4 |
179.3 |
179.8 |
O2 |
C2 |
C3 |
H3 |
0.0 |
359.8 |
C3 |
C2 |
C1 |
C6 |
359.5 |
0.2 |
C1 |
C2 |
C3 |
O2 |
180.7 |
180.0 |
C4 |
C3 |
C2 |
H3 |
179.3 |
180.0 |
C2 |
C3 |
C4 |
O4 |
180.1 |
180.0 |
C2 |
C3 |
C4 |
C5 |
0.2 |
360.0 |
C2 |
C3 |
C4 |
H3 |
180.7 |
180.0 |
O4 |
C4 |
C3 |
C5 |
179.9 |
180.0 |
C3 |
C4 |
O4 |
HO4 |
179.9 |
234.7 |
C3 |
C4 |
C5 |
O5 |
180.0 |
180.2 |
C3 |
C4 |
C5 |
C6 |
359.9 |
0.2 |
C2 |
C3 |
H3 |
C4 |
179.3 |
180.0 |
H3 |
C3 |
C4 |
O4 |
359.5 |
0.0 |
H3 |
C3 |
C4 |
C5 |
179.6 |
180.0 |
O4 |
C4 |
C3 |
H3 |
359.5 |
0.0 |
C3 |
C4 |
O4 |
C5 |
180.1 |
180.0 |
O4 |
C4 |
C5 |
O5 |
0.1 |
0.2 |
O4 |
C4 |
C5 |
C6 |
180.0 |
180.1 |
C1 |
C6 |
C5 |
C4 |
359.7 |
359.8 |
C5 |
C4 |
C3 |
H3 |
179.6 |
180.0 |
C3 |
C4 |
C5 |
O4 |
179.9 |
180.0 |
C5 |
C4 |
O4 |
HO4 |
359.8 |
54.7 |
O5 |
C5 |
C4 |
C6 |
180.1 |
180.0 |
C4 |
C5 |
C6 |
H6 |
179.6 |
179.9 |
HO4 |
O4 |
C4 |
C5 |
359.8 |
54.7 |
C1 |
C6 |
C5 |
O5 |
179.6 |
179.8 |
C4 |
C5 |
O5 |
C6 |
179.9 |
180.0 |
O5 |
C5 |
C6 |
H6 |
359.5 |
359.9 |
C1 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
C4 |
C5 |
C6 |
O5 |
180.1 |
180.0 |
C1 |
C6 |
H6 |
C5 |
180.0 |
180.1 |