PDB Chemical Component TPQ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TPQ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.457 1.462
N H 1.020 0.996
N H2 1.021 0.996
CA CB 1.527 1.533
CA C 1.521 1.520
CA HA 1.099 1.097
CB C1 1.509 1.497
CB HB2 1.091 1.097
CB HB3 1.093 1.096
C O 1.231 1.223
C OXT   1.359
OXT HXT   0.981
C1 C2 1.488 1.487
C1 C6 1.396 1.338
C2 O2 1.331 1.227
C2 C3 1.391 1.479
C3 C4 1.397 1.336
C3 H3 1.082 1.085
C4 O4 1.328 1.379
C4 C5 1.483 1.480
O4 HO4 0.949 0.963
C5 O5 1.336 1.227
C5 C6 1.390 1.478
C6 H6 1.079 1.085

Bond Angles for TPQ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 114.3 118.0
CA N H2 110.5 118.0
N CA CB 114.3 110.2
N CA C 112.0 106.3
N CA HA 109.5 109.6
H N H2 110.4 122.6
CB CA C 104.7 112.9
CB CA HA 107.9 109.5
CA CB C1 114.5 112.2
CA CB HB2 108.6 111.1
CA CB HB3 109.1 110.3
C CA HA 108.1 108.3
CA C O 114.7 125.2
CA C OXT   112.0
C1 CB HB2 108.4 108.6
C1 CB HB3 108.8 107.6
CB C1 C2 119.9 117.3
CB C1 C6 119.9 122.8
HB2 CB HB3 107.2 106.9
O C OXT   122.8
C OXT HXT   114.8
C2 C1 C6 120.2 120.0
C1 C2 O2 119.8 122.0
C1 C2 C3 119.5 117.7
C1 C6 C5 120.3 122.3
C1 C6 H6 120.2 121.2
O2 C2 C3 120.8 120.3
C2 C3 C4 120.0 121.9
C2 C3 H3 119.7 116.8
C4 C3 H3 120.2 121.3
C3 C4 O4 121.2 122.6
C3 C4 C5 120.5 120.6
O4 C4 C5 118.3 116.8
C4 O4 HO4 121.2 109.9
C4 C5 O5 120.0 121.8
C4 C5 C6 119.4 117.5
O5 C5 C6 120.6 120.7
C5 C6 H6 119.5 116.5

Torsion Angles for TPQ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 125.3 166.7
CB CA N C 241.1 237.4
CB CA N HA 121.1 120.5
N CA CB C1 312.3 179.3
N CA CB HB2 191.1 57.5
N CA CB HB3 74.5 299.2
C CA N HA 240.1 243.1
N CA C O 323.5 327.8
N CA C OXT   147.5
CA N H H2 234.7 194.0
H N CA CB 180.0 208.5
H N CA C 298.9 331.1
H N CA HA 58.8 88.0
CA N H2 H 127.4 166.0
H2 N CA CB 54.7 41.9
H2 N CA C 173.6 164.4
H2 N CA HA 293.6 281.3
CB CA N H 180.0 208.5
CB CA N H2 54.7 41.9
N CA CB C 122.9 118.6
N CA CB HA 237.9 239.4
C CA CB HA 115.0 120.7
CB CA C O 87.9 88.6
CB CA C OXT   268.4
C1 CB CA HB2 121.3 121.8
C1 CB CA HB3 237.8 240.1
CA CB C1 C2 279.6 86.8
CA CB C1 C6 100.9 266.8
HB2 CB CA HB3 116.6 118.4
C CA N H 298.9 331.1
C CA N H2 173.6 164.4
N CA C CB 235.6 239.1
N CA C HA 120.8 117.8
CB CA C HA 245.2 238.6
C CA CB C1 189.4 60.7
C CA CB HB2 68.1 298.9
C CA CB HB3 311.6 180.6
O C CA OXT   180.2
CA C OXT HXT   180.2
HA CA N H 58.8 88.0
HA CA N H2 293.6 281.3
N CA HA CB 125.0 121.0
N CA HA C 237.7 244.4
CB CA HA C 112.8 123.4
HA CA CB C1 74.4 300.0
HA CA CB HB2 313.1 178.2
HA CA CB HB3 196.6 59.8
HA CA C O 202.7 210.0
HA CA C OXT   29.8
C1 CB CA C 189.4 60.7
C1 CB CA HA 74.4 300.0
CA CB C1 HB2 238.6 236.8
CA CB C1 HB3 122.3 121.4
HB2 CB C1 HB3 243.7 244.6
C2 C1 CB C6 178.7 180.0
CB C1 C2 O2 1.5 0.1
CB C1 C2 C3 180.8 180.1
CB C1 C6 C5 179.3 180.0
CB C1 C6 H6 359.4 360.0
HB2 CB CA C 68.1 298.9
HB2 CB CA HA 313.1 178.2
CA CB HB2 C1 125.0 123.8
CA CB HB2 HB3 242.3 239.6
C1 CB HB2 HB3 117.3 115.8
HB2 CB C1 C2 41.0 210.0
HB2 CB C1 C6 222.3 30.0
HB3 CB CA C 311.6 180.6
HB3 CB CA HA 196.6 59.8
CA CB HB3 C1 234.4 237.4
CA CB HB3 HB2 117.4 120.9
C1 CB HB3 HB2 243.0 243.5
HB3 CB C1 C2 157.3 325.4
HB3 CB C1 C6 338.6 145.4
O C CA HA 202.7 210.0
CA C O OXT   179.7
O C OXT HXT   0.0
OXT C CA HA   29.8
CA C OXT O   180.2
C2 C1 CB HB2 41.0 210.0
C2 C1 CB HB3 157.3 325.4
CB C1 C2 C6 181.3 180.0
C2 C1 C6 C5 0.6 0.0
C2 C1 C6 H6 180.7 179.9
O2 C2 C1 C3 180.7 180.0
C1 C2 C3 C4 0.1 359.8
C1 C2 C3 H3 180.7 179.9
C6 C1 CB HB2 222.3 30.0
C6 C1 CB HB3 338.6 145.4
CB C1 C6 C2 178.7 180.0
C6 C1 C2 O2 180.2 180.2
C6 C1 C2 C3 359.5 0.2
C4 C5 C6 C1 359.7 359.8
O5 C5 C6 C1 179.6 179.8
C5 C6 C1 H6 180.0 180.1
O2 C2 C1 C6 180.2 180.2
C1 C2 O2 C3 179.3 180.0
O2 C2 C3 C4 179.3 179.8
O2 C2 C3 H3 0.0 359.8
C3 C2 C1 C6 359.5 0.2
C1 C2 C3 O2 180.7 180.0
C4 C3 C2 H3 179.3 180.0
C2 C3 C4 O4 180.1 180.0
C2 C3 C4 C5 0.2 360.0
C2 C3 C4 H3 180.7 180.0
O4 C4 C3 C5 179.9 180.0
C3 C4 O4 HO4 179.9 234.7
C3 C4 C5 O5 180.0 180.2
C3 C4 C5 C6 359.9 0.2
C2 C3 H3 C4 179.3 180.0
H3 C3 C4 O4 359.5 0.0
H3 C3 C4 C5 179.6 180.0
O4 C4 C3 H3 359.5 0.0
C3 C4 O4 C5 180.1 180.0
O4 C4 C5 O5 0.1 0.2
O4 C4 C5 C6 180.0 180.1
C1 C6 C5 C4 359.7 359.8
C5 C4 C3 H3 179.6 180.0
C3 C4 C5 O4 179.9 180.0
C5 C4 O4 HO4 359.8 54.7
O5 C5 C4 C6 180.1 180.0
C4 C5 C6 H6 179.6 179.9
HO4 O4 C4 C5 359.8 54.7
C1 C6 C5 O5 179.6 179.8
C4 C5 O5 C6 179.9 180.0
O5 C5 C6 H6 359.5 359.9
C1 C6 C5 H6 180.0 179.9
C4 C5 C6 O5 180.1 180.0
C1 C6 H6 C5 180.0 180.1