PDB Chemical Component TPP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TPP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1' C2' 1.337 1.317
N1' C6' 1.332 1.325
C2' CM2 1.534 1.507
C2' N3' 1.334 1.318
CM2 HM21 1.100 1.090
CM2 HM22 1.100 1.090
CM2 HM23 1.100 1.090
N3' C4' 1.353 1.330
C4' N4' 1.363 1.385
C4' C5' 1.410 1.397
N4' HN41 1.000 0.970
N4' HN42 1.000 0.971
C5' C6' 1.395 1.380
C5' C7' 1.524 1.508
C6' H6' 1.080 1.080
C7' N3 1.479 1.465
C7' H7'1 1.100 1.090
C7' H7'2 1.100 1.089
N3 C2 1.385 1.291
N3 C4 1.471 1.318
C2 S1 1.767 1.710
C2 H2 1.080 1.080
S1 C5 1.742 1.762
C5 C4 1.363 1.337
C5 C6 1.513 1.507
C4 CM4 1.536 1.507
CM4 HM41 1.100 1.090
CM4 HM42 1.100 1.090
CM4 HM43 1.100 1.089
C6 C7 1.546 1.530
C6 H61 1.100 1.089
C6 H62 1.099 1.090
C7 O7 1.428 1.429
C7 H71 1.100 1.091
C7 H72 1.100 1.089
O7 PA 1.530 1.610
PA O1A 1.514 1.480
PA O2A 1.503 1.610
PA O3A 1.532 1.609
O2A HOA2 0.950 0.967
O3A PB 1.573 1.610
PB O1B 1.530 1.480
PB O2B 1.521 1.610
PB O3B 1.485 1.610
O2B HOB2 0.950 0.967
O3B HOB3 0.950 0.967

Bond Angles for TPP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2' N1' C6' 120.6 121.0
N1' C2' CM2 116.2 119.1
N1' C2' N3' 123.8 121.8
N1' C6' C5' 120.8 119.2
N1' C6' H6' 119.6 120.4
CM2 C2' N3' 119.9 119.0
C2' CM2 HM21 109.5 109.5
C2' CM2 HM22 109.5 109.5
C2' CM2 HM23 109.4 109.4
C2' N3' C4' 116.0 120.7
HM21 CM2 HM22 109.4 109.5
HM21 CM2 HM23 109.5 109.4
HM22 CM2 HM23 109.5 109.4
N3' C4' N4' 115.0 120.6
N3' C4' C5' 124.0 118.9
N4' C4' C5' 120.5 120.5
C4' N4' HN41 109.5 120.0
C4' N4' HN42 109.5 120.0
C4' C5' C6' 114.9 118.4
C4' C5' C7' 121.8 120.8
HN41 N4' HN42 109.4 120.0
C6' C5' C7' 123.3 120.8
C5' C6' H6' 119.6 120.4
C5' C7' N3 115.0 109.5
C5' C7' H7'1 107.7 109.4
C5' C7' H7'2 106.4 109.5
N3 C7' H7'1 107.7 109.4
N3 C7' H7'2 106.4 109.5
C7' N3 C2 122.9 121.4
C7' N3 C4 122.4 121.5
H7'1 C7' H7'2 113.9 109.5
C2 N3 C4 114.7 117.1
N3 C2 S1 110.5 110.2
N3 C2 H2 124.8 124.9
N3 C4 C5 108.8 114.5
N3 C4 CM4 122.6 122.7
S1 C2 H2 124.8 124.9
C2 S1 C5 90.4 90.3
S1 C5 C4 115.7 107.9
S1 C5 C6 113.5 126.0
C4 C5 C6 130.7 126.1
C5 C4 CM4 128.1 122.7
C5 C6 C7 113.7 109.4
C5 C6 H61 108.1 109.5
C5 C6 H62 107.1 109.5
C4 CM4 HM41 109.5 109.5
C4 CM4 HM42 109.5 109.5
C4 CM4 HM43 109.4 109.5
HM41 CM4 HM42 109.5 109.4
HM41 CM4 HM43 109.4 109.5
HM42 CM4 HM43 109.5 109.5
C7 C6 H61 108.1 109.5
C7 C6 H62 107.1 109.5
C6 C7 O7 105.8 109.5
C6 C7 H71 110.7 109.5
C6 C7 H72 111.5 109.5
H61 C6 H62 112.8 109.5
O7 C7 H71 110.7 109.4
O7 C7 H72 111.5 109.5
C7 O7 PA 120.9 123.0
H71 C7 H72 106.7 109.5
O7 PA O1A 110.0 109.4
O7 PA O2A 107.3 109.4
O7 PA O3A 111.5 109.5
O1A PA O2A 110.4 109.4
O1A PA O3A 107.8 109.5
O2A PA O3A 109.8 109.5
PA O2A HOA2 109.5 114.0
PA O3A PB 135.1 134.0
O3A PB O1B 104.8 109.5
O3A PB O2B 100.3 109.4
O3A PB O3B 112.2 109.5
O1B PB O2B 112.8 109.5
O1B PB O3B 111.9 109.5
O2B PB O3B 113.9 109.5
PB O2B HOB2 109.5 114.0
PB O3B HOB3 109.5 114.0

Torsion Angles for TPP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2' N1' C6' C5' 1.3 360.0
C2' N1' C6' H6' 181.3 180.0
CM2 C2' N1' N3' 181.9 180.1
N1' C2' CM2 HM21 284.6 89.9
N1' C2' CM2 HM22 44.6 210.0
N1' C2' CM2 HM23 164.6 330.0
N1' C2' N3' C4' 358.0 0.1
C6' N1' C2' CM2 182.0 180.0
C6' N1' C2' N3' 0.1 360.0
C4' C5' C6' N1' 359.3 0.1
N1' C6' C5' C7' 176.5 180.0
C5' C6' N1' H6' 180.0 179.9
CM2 C2' N1' C6' 182.0 180.0
N1' C2' CM2 N3' 178.2 179.9
CM2 C2' N3' C4' 176.0 180.0
HM21 CM2 C2' HM22 240.0 239.9
HM21 CM2 C2' HM23 120.0 119.9
HM22 CM2 C2' HM23 240.0 240.0
N3' C2' N1' C6' 0.1 360.0
N1' C2' N3' CM2 182.0 180.1
N3' C2' CM2 HM21 106.5 270.0
N3' C2' CM2 HM22 226.4 30.1
N3' C2' CM2 HM23 346.5 150.1
C2' N3' C4' N4' 190.6 180.0
C2' N3' C4' C5' 2.6 359.9
HM21 CM2 C2' N3' 106.5 270.0
C2' CM2 HM21 HM22 120.0 120.1
C2' CM2 HM21 HM23 240.0 240.1
HM22 CM2 HM21 HM23 120.0 120.0
HM22 CM2 C2' N3' 226.4 30.1
C2' CM2 HM22 HM21 240.0 240.0
C2' CM2 HM22 HM23 120.0 120.0
HM21 CM2 HM22 HM23 240.0 240.0
HM23 CM2 C2' N3' 346.5 150.1
C2' CM2 HM23 HM21 120.0 119.9
C2' CM2 HM23 HM22 240.0 240.0
HM21 CM2 HM23 HM22 120.0 120.0
N4' C4' N3' C5' 188.0 180.1
N3' C4' N4' HN41 81.6 360.0
N3' C4' N4' HN42 201.6 180.0
N3' C4' C5' C6' 358.7 360.0
N3' C4' C5' C7' 181.5 180.0
N3' C4' N4' C5' 172.3 179.9
N4' C4' C5' C6' 170.2 179.9
N4' C4' C5' C7' 353.0 360.0
HN41 N4' C4' HN42 240.0 180.0
N1' C6' C5' C4' 359.3 0.1
N3' C4' C5' N4' 188.5 180.1
C5' C4' N4' HN41 269.4 180.0
C5' C4' N4' HN42 29.3 0.0
C6' C5' C4' C7' 177.2 180.0
C4' C5' C6' H6' 179.3 180.0
C4' C5' C7' N3 295.3 81.8
C4' C5' C7' H7'1 55.3 201.6
C4' C5' C7' H7'2 177.8 321.7
HN41 N4' C4' C5' 269.4 180.0
C4' N4' HN41 HN42 120.0 180.0
HN42 N4' C4' C5' 29.3 0.0
C4' N4' HN42 HN41 240.0 180.0
N1' C6' C5' H6' 180.0 180.1
C4' C5' C6' C7' 182.8 180.0
C6' C5' C7' N3 118.3 261.8
C6' C5' C7' H7'1 238.4 21.7
C6' C5' C7' H7'2 0.8 141.7
C4' C5' C7' C6' 177.0 180.0
C7' C5' C6' H6' 356.5 360.0
N3 C7' C5' H7'1 240.0 240.1
N3 C7' C5' H7'2 117.5 120.1
C5' C7' N3 C2 95.4 268.1
C5' C7' N3 C4 278.0 87.8
H7'1 C7' C5' H7'2 237.5 239.9
N1' C6' H6' C5' 180.0 179.9
H6' C6' C5' C7' 356.5 360.0
C5' C7' N3 H7'1 120.0 119.9
C5' C7' N3 H7'2 242.5 239.9
H7'1 C7' N3 H7'2 122.5 120.0
C2 N3 C7' C4 177.4 180.3
C7' N3 C2 S1 182.3 180.0
C7' N3 C2 H2 2.3 360.0
C7' N3 C4 C5 178.1 179.7
C7' N3 C4 CM4 5.2 360.0
C5' C7' H7'1 N3 235.5 240.1
C5' C7' H7'1 H7'2 117.8 120.0
N3 C7' H7'1 H7'2 242.3 240.0
H7'1 C7' N3 C2 335.4 148.2
H7'1 C7' N3 C4 158.0 327.9
C5' C7' H7'2 N3 123.1 120.0
C5' C7' H7'2 H7'1 241.5 240.0
N3 C7' H7'2 H7'1 118.5 120.0
H7'2 C7' N3 C2 212.9 28.1
H7'2 C7' N3 C4 35.6 207.8
C2 N3 C7' H7'1 335.4 148.2
C2 N3 C7' H7'2 212.9 28.1
C7' N3 C2 C4 182.4 179.7
C2 N3 C4 C5 0.5 359.4
C2 N3 C4 CM4 187.6 179.7
S1 C2 N3 H2 180.0 180.0
N3 C2 S1 C5 359.8 0.0
C4 N3 C7' H7'1 158.0 327.9
C4 N3 C7' H7'2 35.6 207.8
C7' N3 C4 C2 177.6 180.3
C4 N3 C2 S1 359.9 0.3
C4 N3 C2 H2 179.9 180.3
S1 C5 C4 N3 359.3 0.6
N3 C4 C5 C6 175.0 180.2
C5 C4 N3 CM4 172.9 179.7
N3 C4 CM4 HM41 163.5 95.5
N3 C4 CM4 HM42 283.5 215.5
N3 C4 CM4 HM43 43.5 335.5
S1 C2 N3 C4 359.9 0.3
N3 C2 S1 H2 180.0 180.0
C2 S1 C5 C4 0.5 359.7
C2 S1 C5 C6 184.1 180.0
H2 C2 N3 C4 179.9 180.3
N3 C2 H2 S1 180.0 180.0
H2 C2 S1 C5 179.8 180.0
N3 C4 C5 S1 359.3 0.6
C5 S1 C2 H2 179.8 180.0
C4 C5 S1 C6 176.4 179.6
S1 C5 C4 CM4 171.8 180.3
S1 C5 C6 C7 276.9 270.0
S1 C5 C6 H61 36.9 30.0
S1 C5 C6 H62 158.8 150.0
N3 C4 C5 CM4 187.6 180.3
S1 C5 C4 C6 184.4 180.4
C4 C5 C6 C7 101.2 90.4
C4 C5 C6 H61 221.2 210.4
C4 C5 C6 H62 343.1 330.4
C5 C4 CM4 HM41 352.0 275.8
C5 C4 CM4 HM42 112.0 35.8
C5 C4 CM4 HM43 232.0 155.9
S1 C5 C6 C4 175.7 179.6
C6 C5 C4 CM4 347.4 359.9
C7 C6 C5 H61 240.0 240.0
C7 C6 C5 H62 118.2 120.0
C5 C6 C7 O7 193.7 180.1
C5 C6 C7 H71 313.7 300.0
C5 C6 C7 H72 72.2 60.0
H61 C6 C5 H62 238.1 240.0
N3 C4 CM4 C5 171.5 179.7
CM4 C4 C5 C6 347.4 359.9
HM41 CM4 C4 HM42 240.0 240.1
HM41 CM4 C4 HM43 120.0 120.0
HM42 CM4 C4 HM43 240.0 239.9
C4 CM4 HM41 HM42 120.0 120.0
C4 CM4 HM41 HM43 240.0 240.0
HM42 CM4 HM41 HM43 120.0 120.0
C4 CM4 HM42 HM41 239.9 240.0
C4 CM4 HM42 HM43 120.0 120.0
HM41 CM4 HM42 HM43 240.0 240.0
C4 CM4 HM43 HM41 120.0 120.0
C4 CM4 HM43 HM42 240.0 240.0
HM41 CM4 HM43 HM42 120.0 120.0
C5 C6 C7 H61 120.0 120.0
C5 C6 C7 H62 241.9 240.0
H61 C6 C7 H62 121.8 120.0
O7 C7 C6 H71 240.0 240.1
O7 C7 C6 H72 121.4 120.0
C6 C7 O7 PA 209.7 180.0
H71 C7 C6 H72 241.4 240.0
C5 C6 H61 C7 236.5 240.0
C5 C6 H61 H62 118.3 120.0
C7 C6 H61 H62 241.7 240.0
H61 C6 C7 O7 73.6 60.0
H61 C6 C7 H71 193.6 180.0
H61 C6 C7 H72 312.2 300.0
C5 C6 H62 C7 122.4 120.0
C5 C6 H62 H61 241.2 240.0
C7 C6 H62 H61 118.8 120.0
H62 C6 C7 O7 311.8 300.0
H62 C6 C7 H71 71.8 60.0
H62 C6 C7 H72 190.4 180.0
O7 C7 C6 H61 73.6 60.0
O7 C7 C6 H62 311.8 300.0
C6 C7 O7 H71 120.0 120.0
C6 C7 O7 H72 238.6 239.9
H71 C7 O7 H72 118.6 120.0
C7 O7 PA O1A 317.9 54.9
C7 O7 PA O2A 197.7 295.0
C7 O7 PA O3A 77.4 174.9
H71 C7 C6 H61 193.6 180.0
H71 C7 C6 H62 71.8 60.0
C6 C7 H71 O7 243.0 240.0
C6 C7 H71 H72 121.5 120.0
O7 C7 H71 H72 238.5 240.0
H71 C7 O7 PA 89.7 60.1
H72 C7 C6 H61 312.2 300.0
H72 C7 C6 H62 190.4 180.0
C6 C7 H72 O7 118.0 120.0
C6 C7 H72 H71 239.0 240.0
O7 C7 H72 H71 121.0 119.9
H72 C7 O7 PA 331.2 300.1
PA O7 C7 H71 89.7 60.1
PA O7 C7 H72 331.2 300.1
O1A PA O7 O2A 120.2 119.9
O1A PA O7 O3A 240.4 240.0
O2A PA O7 O3A 120.3 120.0
O7 PA O2A HOA2 196.0 300.0
O7 PA O3A PB 49.9 200.0
O7 PA O1A O2A 241.7 240.1
O7 PA O1A O3A 121.7 120.0
O2A PA O1A O3A 240.0 240.0
O1A PA O2A HOA2 76.1 180.0
O1A PA O3A PB 170.7 320.0
O7 PA O2A O1A 119.9 119.9
O7 PA O2A O3A 238.7 240.0
O1A PA O2A O3A 118.8 120.0
O2A PA O3A PB 291.1 79.9
O7 PA O3A O1A 239.2 240.0
O7 PA O3A O2A 118.8 120.0
O1A PA O3A O2A 239.6 240.0
O3A PA O2A HOA2 317.3 60.0
PA O3A PB O1B 50.0 320.0
PA O3A PB O2B 167.1 80.0
PA O3A PB O3B 288.4 200.0
HOA2 O2A PA O3A 317.3 60.0
O1B PB O3A O2B 242.9 240.0
O1B PB O3A O3B 121.7 120.0
O2B PB O3A O3B 238.8 240.0
O3A PB O2B HOB2 90.1 60.0
O3A PB O3B HOB3 346.7 180.0
O3A PB O1B O2B 108.2 120.0
O3A PB O1B O3B 238.2 240.0
O2B PB O1B O3B 130.0 120.0
O1B PB O2B HOB2 201.1 179.9
O1B PB O3B HOB3 229.2 60.0
O3A PB O2B O1B 249.0 240.0
O3A PB O2B O3B 120.0 120.0
O1B PB O2B O3B 231.0 239.9
O2B PB O3B HOB3 99.8 300.0
O3A PB O3B O1B 117.5 120.0
O3A PB O3B O2B 246.9 240.0
O1B PB O3B O2B 129.4 120.1
O3B PB O2B HOB2 330.1 300.0
HOB2 O2B PB O3B 330.1 300.0