PDB Chemical Component TPO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TPO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.442 |
1.469 |
| N |
H |
1.020 |
1.008 |
| N |
H2 |
1.019 |
1.009 |
| CA |
CB |
1.509 |
1.530 |
| CA |
C |
1.491 |
1.505 |
| CA |
HA |
1.115 |
1.090 |
| CB |
CG2 |
1.529 |
1.529 |
| CB |
OG1 |
1.390 |
1.428 |
| CB |
HB |
1.116 |
1.090 |
| CG2 |
HG21 |
1.115 |
1.090 |
| CG2 |
HG22 |
1.116 |
1.089 |
| CG2 |
HG23 |
1.115 |
1.090 |
| OG1 |
P |
1.574 |
1.609 |
| P |
O1P |
1.455 |
1.480 |
| P |
O2P |
1.458 |
1.610 |
| P |
O3P |
1.490 |
1.610 |
| O2P |
HOP2 |
0.951 |
0.967 |
| O3P |
HOP3 |
0.951 |
0.966 |
| C |
O |
1.229 |
1.207 |
| C |
OXT |
1.313 |
1.343 |
| OXT |
HXT |
0.951 |
0.966 |
Bond Angles for TPO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
112.6 |
106.7 |
| CA |
N |
H2 |
111.1 |
106.7 |
| N |
CA |
CB |
112.6 |
109.4 |
| N |
CA |
C |
113.7 |
109.5 |
| N |
CA |
HA |
103.0 |
109.4 |
| H |
N |
H2 |
111.1 |
106.7 |
| CB |
CA |
C |
105.3 |
109.5 |
| CB |
CA |
HA |
111.7 |
109.5 |
| CA |
CB |
CG2 |
111.7 |
109.5 |
| CA |
CB |
OG1 |
110.9 |
109.4 |
| CA |
CB |
HB |
108.2 |
109.4 |
| C |
CA |
HA |
110.6 |
109.5 |
| CA |
C |
O |
121.4 |
120.0 |
| CA |
C |
OXT |
113.1 |
120.0 |
| CG2 |
CB |
OG1 |
112.9 |
109.5 |
| CG2 |
CB |
HB |
106.0 |
109.5 |
| CB |
CG2 |
HG21 |
111.7 |
109.5 |
| CB |
CG2 |
HG22 |
111.4 |
109.5 |
| CB |
CG2 |
HG23 |
111.4 |
109.5 |
| OG1 |
CB |
HB |
106.9 |
109.5 |
| CB |
OG1 |
P |
116.3 |
106.8 |
| HG21 |
CG2 |
HG22 |
111.3 |
109.5 |
| HG21 |
CG2 |
HG23 |
111.4 |
109.4 |
| HG22 |
CG2 |
HG23 |
99.0 |
109.4 |
| OG1 |
P |
O1P |
103.9 |
109.5 |
| OG1 |
P |
O2P |
105.5 |
109.5 |
| OG1 |
P |
O3P |
107.5 |
109.5 |
| O1P |
P |
O2P |
119.6 |
109.4 |
| O1P |
P |
O3P |
112.9 |
109.5 |
| O2P |
P |
O3P |
106.7 |
109.5 |
| P |
O2P |
HOP2 |
105.5 |
106.8 |
| P |
O3P |
HOP3 |
107.5 |
106.8 |
| O |
C |
OXT |
125.4 |
120.0 |
| C |
OXT |
HXT |
113.1 |
120.0 |
Torsion Angles for TPO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.4 |
113.8 |
| CB |
CA |
N |
C |
240.3 |
239.9 |
| CB |
CA |
N |
HA |
120.6 |
119.9 |
| N |
CA |
CB |
CG2 |
184.8 |
300.0 |
| N |
CA |
CB |
OG1 |
311.7 |
60.1 |
| N |
CA |
CB |
HB |
68.6 |
180.0 |
| C |
CA |
N |
HA |
240.2 |
240.0 |
| N |
CA |
C |
O |
319.5 |
329.9 |
| N |
CA |
C |
OXT |
141.1 |
150.0 |
| CA |
N |
H |
H2 |
234.6 |
246.2 |
| H |
N |
CA |
CB |
180.1 |
53.7 |
| H |
N |
CA |
C |
299.7 |
173.8 |
| H |
N |
CA |
HA |
59.5 |
293.8 |
| CA |
N |
H2 |
H |
126.2 |
113.8 |
| H2 |
N |
CA |
CB |
54.7 |
299.9 |
| H2 |
N |
CA |
C |
174.4 |
60.0 |
| H2 |
N |
CA |
HA |
294.1 |
180.0 |
| CB |
CA |
N |
H |
180.1 |
53.7 |
| CB |
CA |
N |
H2 |
54.7 |
299.9 |
| N |
CA |
CB |
C |
124.4 |
120.0 |
| N |
CA |
CB |
HA |
244.6 |
240.1 |
| C |
CA |
CB |
HA |
120.2 |
120.1 |
| CB |
CA |
C |
O |
83.3 |
89.9 |
| CB |
CA |
C |
OXT |
264.9 |
270.0 |
| CG2 |
CB |
CA |
OG1 |
233.2 |
240.0 |
| CG2 |
CB |
CA |
HB |
116.2 |
120.0 |
| CA |
CB |
CG2 |
HG21 |
180.0 |
60.0 |
| CA |
CB |
CG2 |
HG22 |
305.2 |
180.0 |
| CA |
CB |
CG2 |
HG23 |
54.7 |
300.0 |
| OG1 |
CB |
CA |
HB |
243.1 |
240.0 |
| CA |
CB |
OG1 |
P |
108.9 |
120.0 |
| C |
CA |
N |
H |
299.7 |
173.8 |
| C |
CA |
N |
H2 |
174.4 |
60.0 |
| N |
CA |
C |
CB |
236.2 |
240.0 |
| N |
CA |
C |
HA |
115.3 |
120.0 |
| CB |
CA |
C |
HA |
239.1 |
240.0 |
| C |
CA |
CB |
CG2 |
60.4 |
180.0 |
| C |
CA |
CB |
OG1 |
187.2 |
300.0 |
| C |
CA |
CB |
HB |
304.2 |
60.0 |
| O |
C |
CA |
OXT |
178.4 |
179.9 |
| CA |
C |
OXT |
HXT |
180.0 |
179.9 |
| HA |
CA |
N |
H |
59.5 |
293.8 |
| HA |
CA |
N |
H2 |
294.1 |
180.0 |
| N |
CA |
HA |
CB |
121.2 |
119.9 |
| N |
CA |
HA |
C |
238.2 |
240.0 |
| CB |
CA |
HA |
C |
117.0 |
120.1 |
| HA |
CA |
CB |
CG2 |
300.2 |
60.0 |
| HA |
CA |
CB |
OG1 |
67.1 |
180.0 |
| HA |
CA |
CB |
HB |
184.0 |
299.9 |
| HA |
CA |
C |
O |
204.2 |
210.0 |
| HA |
CA |
C |
OXT |
25.8 |
30.0 |
| CG2 |
CB |
CA |
C |
60.4 |
180.0 |
| CG2 |
CB |
CA |
HA |
300.2 |
60.0 |
| CA |
CB |
CG2 |
OG1 |
125.7 |
120.0 |
| CA |
CB |
CG2 |
HB |
242.4 |
240.0 |
| OG1 |
CB |
CG2 |
HB |
116.7 |
120.0 |
| CG2 |
CB |
OG1 |
P |
235.1 |
240.0 |
| HG21 |
CG2 |
CB |
HG22 |
234.8 |
239.9 |
| HG21 |
CG2 |
CB |
HG23 |
125.3 |
119.9 |
| HG22 |
CG2 |
CB |
HG23 |
250.5 |
240.0 |
| OG1 |
CB |
CA |
C |
187.2 |
300.0 |
| OG1 |
CB |
CA |
HA |
67.1 |
180.0 |
| CA |
CB |
OG1 |
CG2 |
233.8 |
240.0 |
| CA |
CB |
OG1 |
HB |
117.7 |
119.9 |
| CG2 |
CB |
OG1 |
HB |
243.9 |
240.0 |
| OG1 |
CB |
CG2 |
HG21 |
54.3 |
299.9 |
| OG1 |
CB |
CG2 |
HG22 |
179.5 |
60.0 |
| OG1 |
CB |
CG2 |
HG23 |
289.0 |
180.0 |
| CB |
OG1 |
P |
O1P |
189.9 |
60.0 |
| CB |
OG1 |
P |
O2P |
316.5 |
180.0 |
| CB |
OG1 |
P |
O3P |
70.1 |
300.0 |
| HB |
CB |
CA |
C |
304.2 |
60.0 |
| HB |
CB |
CA |
HA |
184.0 |
299.9 |
| CA |
CB |
HB |
CG2 |
119.9 |
120.0 |
| CA |
CB |
HB |
OG1 |
240.5 |
240.1 |
| CG2 |
CB |
HB |
OG1 |
120.6 |
120.0 |
| HB |
CB |
CG2 |
HG21 |
297.6 |
179.9 |
| HB |
CB |
CG2 |
HG22 |
62.8 |
300.0 |
| HB |
CB |
CG2 |
HG23 |
172.3 |
60.0 |
| HB |
CB |
OG1 |
P |
351.2 |
0.0 |
| HG21 |
CG2 |
CB |
OG1 |
54.3 |
299.9 |
| HG21 |
CG2 |
CB |
HB |
297.6 |
179.9 |
| CB |
CG2 |
HG21 |
HG22 |
125.2 |
120.1 |
| CB |
CG2 |
HG21 |
HG23 |
234.7 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
109.5 |
119.9 |
| HG22 |
CG2 |
CB |
OG1 |
179.5 |
60.0 |
| HG22 |
CG2 |
CB |
HB |
62.8 |
300.0 |
| CB |
CG2 |
HG22 |
HG21 |
234.6 |
239.9 |
| CB |
CG2 |
HG22 |
HG23 |
117.3 |
120.1 |
| HG21 |
CG2 |
HG22 |
HG23 |
242.7 |
240.1 |
| HG23 |
CG2 |
CB |
OG1 |
289.0 |
180.0 |
| HG23 |
CG2 |
CB |
HB |
172.3 |
60.0 |
| CB |
CG2 |
HG23 |
HG21 |
125.5 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
242.7 |
239.9 |
| HG21 |
CG2 |
HG23 |
HG22 |
117.3 |
119.9 |
| P |
OG1 |
CB |
HB |
351.2 |
0.0 |
| O1P |
P |
OG1 |
O2P |
233.4 |
240.1 |
| O1P |
P |
OG1 |
O3P |
119.8 |
120.0 |
| O2P |
P |
OG1 |
O3P |
246.4 |
240.0 |
| OG1 |
P |
O2P |
HOP2 |
180.0 |
180.0 |
| OG1 |
P |
O3P |
HOP3 |
180.1 |
300.0 |
| OG1 |
P |
O1P |
O2P |
117.1 |
120.0 |
| OG1 |
P |
O1P |
O3P |
243.9 |
240.0 |
| O2P |
P |
O1P |
O3P |
126.8 |
120.0 |
| O1P |
P |
O2P |
HOP2 |
296.3 |
300.0 |
| O1P |
P |
O3P |
HOP3 |
66.1 |
179.9 |
| OG1 |
P |
O2P |
O1P |
243.7 |
240.0 |
| OG1 |
P |
O2P |
O3P |
114.1 |
120.0 |
| O1P |
P |
O2P |
O3P |
230.4 |
240.0 |
| O2P |
P |
O3P |
HOP3 |
292.8 |
60.0 |
| OG1 |
P |
O3P |
O1P |
113.9 |
120.0 |
| OG1 |
P |
O3P |
O2P |
247.3 |
240.0 |
| O1P |
P |
O3P |
O2P |
133.4 |
120.0 |
| O3P |
P |
O2P |
HOP2 |
65.9 |
60.0 |
| HOP2 |
O2P |
P |
O3P |
65.9 |
60.0 |
| O |
C |
CA |
HA |
204.2 |
210.0 |
| CA |
C |
O |
OXT |
181.8 |
180.1 |
| O |
C |
OXT |
HXT |
1.7 |
0.0 |
| OXT |
C |
CA |
HA |
25.8 |
30.0 |
| CA |
C |
OXT |
O |
178.3 |
179.9 |