PDB Chemical Component TPM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TPM

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.389	1.388
C1	C6	1.382	1.389
C1	N1	1.374	1.397
C2	C3	1.401	1.382
C2	HC21	1.103	1.080
C3	C4	1.394	1.383
C3	HC31	1.103	1.080
C5	C6	1.393	1.382
C5	C4	1.393	1.382
C5	HC51	1.102	1.080
C6	HC61	1.103	1.080
C4	C7	1.511	1.508
C7	N2	1.459	1.465
C7	HC71	1.115	1.090
C7	HC72	1.114	1.090
N1	HN11	1.021	0.970
N1	HN12	1.020	0.970
N2	C8	1.376	1.371
N2	HN21	1.020	0.970
C8	N3	1.369	1.275
C8	C9	1.506	1.502
N3	C12	1.470	1.457
N3	HN31	1.020	0.970
C9	C10	1.531	1.533
C9	HC91	1.115	1.089
C9	HC92	1.116	1.090
C10	C11	1.492	1.534
C10	H101	1.114	1.090
C10	H102	1.115	1.089
C11	C12	1.535	1.530
C11	H111	1.114	1.090
C11	H112	1.115	1.090
C12	H121	1.115	1.090
C12	H122	1.115	1.090

Bond Angles for TPM

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	119.9	119.9
C2	C1	N1	120.4	120.1
C1	C2	C3	119.6	119.9
C1	C2	HC21	119.7	120.1
C6	C1	N1	119.7	120.0
C1	C6	C5	120.1	119.9
C1	C6	HC61	119.5	120.1
C1	N1	HN11	120.5	120.0
C1	N1	HN12	108.3	120.0
C3	C2	HC21	120.7	120.0
C2	C3	C4	121.1	120.0
C2	C3	HC31	119.7	120.0
C4	C3	HC31	119.3	120.0
C3	C4	C5	118.1	120.2
C3	C4	C7	121.0	119.9
C6	C5	C4	121.2	120.1
C6	C5	HC51	119.4	119.9
C5	C6	HC61	120.4	120.0
C4	C5	HC51	119.4	120.0
C5	C4	C7	120.8	119.9
C4	C7	N2	114.3	109.5
C4	C7	HC71	110.4	109.4
C4	C7	HC72	110.4	109.4
N2	C7	HC71	110.4	109.5
N2	C7	HC72	110.4	109.5
C7	N2	C8	118.7	119.9
C7	N2	HN21	108.9	120.0
HC71	C7	HC72	99.9	109.5
HN11	N1	HN12	108.2	120.0
C8	N2	HN21	108.9	120.0
N2	C8	N3	116.4	117.9
N2	C8	C9	122.5	117.8
N3	C8	C9	121.0	124.3
C8	N3	C12	118.9	125.0
C8	N3	HN31	117.1	117.5
C8	C9	C10	110.5	109.8
C8	C9	HC91	111.8	109.7
C8	C9	HC92	111.8	109.1
C12	N3	HN31	124.1	117.5
N3	C12	C11	114.9	110.5
N3	C12	H121	110.2	109.3
N3	C12	H122	110.2	109.3
C10	C9	HC91	111.9	109.4
C10	C9	HC92	111.9	109.4
C9	C10	C11	110.3	108.1
C9	C10	H101	111.9	109.9
C9	C10	H102	111.9	109.6
HC91	C9	HC92	98.5	109.4
C11	C10	H101	111.9	109.7
C11	C10	H102	111.9	109.8
C10	C11	C12	111.7	108.4
C10	C11	H111	111.4	109.7
C10	C11	H112	111.4	109.6
H101	C10	H102	98.6	109.7
C12	C11	H111	111.4	109.7
C12	C11	H112	111.4	109.6
C11	C12	H121	110.2	109.2
C11	C12	H122	110.3	109.2
H111	C11	H112	99.0	109.7
H121	C12	H122	100.0	109.2

Torsion Angles for TPM

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	N1	178.8	180.3
C2	C1	C6	C5	359.9	359.5
C2	C1	C6	HC61	179.9	180.0
C2	C1	N1	HN11	180.0	0.0
C2	C1	N1	HN12	54.7	179.7
C3	C2	C1	HC21	180.0	180.0
C1	C2	C3	C4	0.4	360.0
C1	C2	C3	HC31	180.4	180.0
C2	C1	C6	N1	181.2	179.7
C6	C1	C2	C3	0.0	0.2
C6	C1	C2	HC21	180.0	180.2
C6	C1	N1	HN11	1.2	179.8
C6	C1	N1	HN12	235.9	359.5
C1	C6	C5	C4	359.8	0.5
C1	C6	C5	HC51	179.8	180.2
C5	C6	C1	HC61	180.0	179.5
C2	C1	N1	C6	178.8	180.3
N1	C1	C2	C3	181.2	180.0
N1	C1	C2	HC21	1.2	360.0
N1	C1	C6	C5	178.7	179.7
N1	C1	C6	HC61	358.8	0.2
HN11	N1	C1	HN12	125.3	180.3
C3	C2	C1	C6	0.0	0.2
C3	C2	C1	N1	181.2	180.0
C1	C2	C3	HC21	180.0	180.0
C4	C3	C2	HC31	180.0	180.0
C2	C3	C4	C5	359.3	0.0
C2	C3	C4	C7	176.5	180.0
HC21	C2	C1	C6	180.0	180.2
HC21	C2	C1	N1	1.2	360.0
C1	C2	HC21	C3	180.0	180.0
HC21	C2	C3	C4	180.4	180.0
HC21	C2	C3	HC31	0.4	0.0
C4	C3	C2	HC21	180.4	180.0
C2	C3	C4	HC31	180.0	180.0
C6	C5	C4	C3	0.6	359.7
C3	C4	C5	HC51	180.6	180.0
C5	C4	C3	C7	182.8	180.0
C3	C4	C7	N2	241.7	90.0
C3	C4	C7	HC71	6.9	210.0
C3	C4	C7	HC72	116.4	330.0
HC31	C3	C2	HC21	0.4	0.0
C2	C3	HC31	C4	180.0	180.0
HC31	C3	C4	C5	179.3	180.0
HC31	C3	C4	C7	356.5	0.0
C5	C6	C1	N1	178.7	179.7
C1	C6	C5	HC61	180.0	180.5
C3	C4	C5	C6	0.6	359.7
C4	C5	C6	HC51	180.0	180.3
C6	C5	C4	C7	183.4	179.7
C5	C4	C3	HC31	179.3	180.0
C3	C4	C5	C7	177.2	180.0
C6	C5	C4	HC51	180.0	179.7
C4	C5	C6	HC61	179.7	180.0
C5	C4	C7	N2	58.8	270.0
C5	C4	C7	HC71	184.1	30.0
C5	C4	C7	HC72	293.5	150.0
C6	C5	HC51	C4	180.0	180.3
HC51	C5	C6	HC61	359.8	359.7
HC51	C5	C4	C7	3.4	0.0
HC61	C6	C1	N1	358.8	0.2
C1	C6	HC61	C5	180.0	179.5
HC61	C6	C5	C4	179.7	180.0
HC61	C6	C5	HC51	359.8	359.7
C7	C4	C3	HC31	356.5	0.0
C3	C4	C7	C5	182.9	180.0
C7	C4	C5	HC51	3.4	0.0
N2	C7	C4	HC71	234.7	240.0
N2	C7	C4	HC72	125.3	120.0
C4	C7	N2	C8	221.9	180.0
C4	C7	N2	HN21	96.6	0.0
HC71	C7	C4	HC72	250.5	240.0
C4	C7	N2	HC71	125.2	120.0
C4	C7	N2	HC72	234.8	240.0
HC71	C7	N2	HC72	109.5	120.1
C8	N2	C7	HN21	125.3	180.0
C7	N2	C8	N3	192.8	0.0
C7	N2	C8	C9	11.9	179.7
C4	C7	HC71	N2	232.6	240.0
C4	C7	HC71	HC72	116.2	119.9
N2	C7	HC71	HC72	243.7	239.9
HC71	C7	N2	C8	96.7	60.0
HC71	C7	N2	HN21	331.4	240.0
C4	C7	HC72	N2	127.4	120.0
C4	C7	HC72	HC71	243.8	240.1
N2	C7	HC72	HC71	116.3	120.1
HC72	C7	N2	C8	347.1	300.0
HC72	C7	N2	HN21	221.8	120.0
C1	N1	HN11	HN12	234.7	179.7
C1	N1	HN12	HN11	132.2	180.3
C8	N2	C7	HC71	96.7	60.0
C8	N2	C7	HC72	347.1	300.0
C7	N2	C8	HN21	234.7	180.0
N3	C8	N2	C9	180.9	180.3
N2	C8	N3	C12	212.4	180.6
N2	C8	N3	HN31	32.3	0.6
N2	C8	C9	C10	185.1	163.5
N2	C8	C9	HC91	310.4	283.8
N2	C8	C9	HC92	59.8	43.6
HN21	N2	C7	HC71	331.4	240.0
HN21	N2	C7	HC72	221.8	120.0
C7	N2	HN21	C8	130.9	180.0
HN21	N2	C8	N3	318.1	180.0
HN21	N2	C8	C9	137.2	359.7
N3	C8	N2	HN21	318.1	180.0
N2	C8	N3	C9	179.1	179.7
N3	C8	C9	C10	4.2	343.2
N3	C8	C9	HC91	129.5	103.4
N3	C8	C9	HC92	238.9	223.3
C12	N3	C8	HN31	180.1	180.0
C8	N3	C12	C11	336.9	342.2
C8	N3	C12	H121	102.1	102.4
C8	N3	C12	H122	211.6	222.0
C9	C8	N2	HN21	137.2	359.7
N2	C8	C9	N3	180.9	180.3
C9	C8	N3	C12	33.3	0.9
C9	C8	N3	HN31	213.2	180.9
C10	C9	C8	HC91	234.7	239.7
C10	C9	C8	HC92	125.3	119.9
C8	C9	C10	C11	310.3	48.2
C8	C9	C10	H101	75.6	288.5
C8	C9	C10	H102	185.1	167.8
HC91	C9	C8	HC92	250.6	240.2
C12	N3	C8	C9	33.3	0.9
C8	N3	C12	HN31	179.9	180.0
C10	C11	C12	N3	337.0	49.6
N3	C12	C11	H111	211.7	169.4
N3	C12	C11	H112	102.2	290.0
C11	C12	N3	H121	234.8	239.8
C11	C12	N3	H122	125.3	120.2
H121	C12	N3	H122	250.6	240.5
HN31	N3	C8	C9	213.2	180.9
C8	N3	HN31	C12	180.1	180.0
HN31	N3	C12	C11	157.0	162.2
HN31	N3	C12	H121	282.2	282.4
HN31	N3	C12	H122	31.7	42.0
C8	C9	C10	HC91	125.2	120.4
C8	C9	C10	HC92	234.7	240.3
HC91	C9	C10	HC92	109.5	119.8
C11	C10	C9	H101	234.8	119.7
C11	C10	C9	H102	125.3	240.4
C9	C10	C11	C12	59.0	293.7
C9	C10	C11	H111	184.3	174.0
C9	C10	C11	H112	293.7	53.4
H101	C10	C9	H102	250.5	120.7
C8	C9	HC91	C10	235.5	239.5
C8	C9	HC91	HC92	117.7	119.7
C10	C9	HC91	HC92	242.2	240.2
HC91	C9	C10	C11	185.1	287.8
HC91	C9	C10	H101	310.3	168.1
HC91	C9	C10	H102	59.8	47.4
C8	C9	HC92	C10	124.5	120.1
C8	C9	HC92	HC91	242.3	240.0
C10	C9	HC92	HC91	117.8	119.8
HC92	C9	C10	C11	75.6	168.0
HC92	C9	C10	H101	200.8	48.3
HC92	C9	C10	H102	310.4	287.6
N3	C12	C11	C10	337.0	49.6
C11	C10	C9	HC91	185.1	287.8
C11	C10	C9	HC92	75.6	168.0
C9	C10	C11	H101	125.2	240.2
C9	C10	C11	H102	234.8	119.5
H101	C10	C11	H102	109.6	239.4
C12	C11	C10	H111	234.7	119.8
C12	C11	C10	H112	125.2	240.3
C10	C11	C12	H121	211.7	289.3
C10	C11	C12	H122	102.3	169.9
H111	C11	C10	H112	250.5	120.6
H101	C10	C9	HC91	310.3	168.1
H101	C10	C9	HC92	200.8	48.3
C9	C10	H101	C11	235.7	118.7
C9	C10	H101	H102	117.8	239.4
C11	C10	H101	H102	242.1	120.6
H101	C10	C11	C12	293.7	53.6
H101	C10	C11	H111	59.0	293.8
H101	C10	C11	H112	168.5	173.2
H102	C10	C9	HC91	59.8	47.4
H102	C10	C9	HC92	310.4	287.6
C9	C10	H102	C11	124.3	241.4
C9	C10	H102	H101	242.2	120.8
C11	C10	H102	H101	117.8	239.4
H102	C10	C11	C12	184.2	174.2
H102	C10	C11	H111	309.5	54.4
H102	C10	C11	H112	59.0	293.9
C11	C12	N3	HN31	157.0	162.2
N3	C12	C11	H121	125.2	120.3
N3	C12	C11	H122	234.7	239.7
C12	C11	C10	H101	293.7	53.6
C12	C11	C10	H102	184.2	174.2
C10	C11	C12	H111	125.3	240.2
C10	C11	C12	H112	234.8	119.7
H111	C11	C12	H112	109.5	239.5
H121	C12	C11	H122	109.5	119.4
H111	C11	C10	H101	59.0	293.8
H111	C11	C10	H102	309.5	54.4
C10	C11	H111	C12	234.5	119.0
C10	C11	H111	H112	117.3	239.5
C12	C11	H111	H112	242.7	120.5
H111	C11	C12	H121	86.5	49.1
H111	C11	C12	H122	337.0	289.7
H112	C11	C10	H101	168.5	173.2
H112	C11	C10	H102	59.0	293.9
C10	C11	H112	C12	125.4	241.1
C10	C11	H112	H111	242.7	120.5
C12	C11	H112	H111	117.3	239.5
H112	C11	C12	H121	337.0	169.7
H112	C11	C12	H122	227.5	50.2
H121	C12	N3	HN31	282.2	282.4
N3	C12	H121	C11	232.1	239.0
N3	C12	H121	H122	116.0	119.6
H121	C12	C11	H111	86.5	49.1
H121	C12	C11	H112	337.0	169.7
C11	C12	H121	H122	243.9	240.6
H122	C12	N3	HN31	31.7	42.0
N3	C12	H122	C11	127.9	121.0
N3	C12	H122	H121	244.0	240.4
H122	C12	C11	H111	337.0	289.7
H122	C12	C11	H112	227.5	50.2
C11	C12	H122	H121	116.1	119.4