PDB Chemical Component TPC

Ideal Model

Chemical Description

Name 5'-THIO-2'-DEOXY-CYTOSINE PHOSPHONIC ACID
Formula C9 H14 N3 O6 P S
Formal charge 0
Molecular weight 323.263 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 34
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3
Bond count 35
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5'-S-phosphono-5'-thiocytidine
Systematic name (OpenEye OEToolkits) [(2S,3S,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methylsulfanylphosphonic acid

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CS[P](O)(O)=O)O2
SMILES (CACTVS) NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CS[P](O)(O)=O)O2
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)CSP(=O)(O)O)O
InChI descriptor InChI=1S/C9H14N3O6PS/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(18-8)4-20-19(15,16)17/h1-2,5-6,8,13H,3-4H2,(H2,10,11,14)(H2,15,16,17)/t5-,6+,8+/m0/s1
InChIKey descriptor MECRPJIAIGIPSF-SHYZEUOFSA-N

Status Information

Last modified 2011-06-04
Created 2004-10-06
Release status REL
Model PDB code 1TL8
Processing site EBI