PDB Chemical Component TPB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TPB

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	N7	1.411	1.398
C1	C2	1.444	1.388
C1	C6	1.462	1.389
N7	C8	1.460	1.386
N7	HN7	1.019	0.970
C2	C21	1.525	1.507
C2	C3	1.445	1.382
C21	H211	1.115	1.089
C21	H212	1.115	1.091
C21	H213	1.115	1.090
C3	C4	1.416	1.382
C3	H3	1.103	1.080
C4	C5	1.461	1.383
C4	C41	1.499	1.507
C5	C6	1.465	1.381
C5	H5	1.102	1.080
C6	C61	1.549	1.506
C61	H611	1.114	1.090
C61	H612	1.116	1.090
C61	H613	1.116	1.089
C8	N1	1.363	1.329
C8	C7	1.384	1.396
N1	C9	1.374	1.323
C9	N5	1.436	1.385
C9	N3	1.436	1.324
N5	C11	1.446	1.394
N5	HN5	1.020	0.969
N3	C10	1.448	1.324
C10	C7	1.384	1.380
C10	H10	1.104	1.080
C7	H7	1.103	1.080
C11	C12	1.427	1.390
C11	C16	1.465	1.392
C12	C13	1.448	1.377
C12	H12	1.103	1.080
C13	C14	1.423	1.399
C13	H13	1.103	1.080
C14	C15	1.458	1.397
C14	C17	1.429	1.432
C15	C16	1.448	1.377
C15	H15	1.103	1.080
C16	H16	1.104	1.080
C17	N6	1.163	1.135
C41	H411	1.114	1.089
C41	H412	1.115	1.090
C41	H413	1.115	1.089

Bond Angles for TPB

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N7	C1	C2	116.3	120.1
N7	C1	C6	124.0	120.0
C1	N7	C8	117.7	120.0
C1	N7	HN7	109.3	120.0
C2	C1	C6	119.7	119.9
C1	C2	C21	120.0	120.0
C1	C2	C3	120.6	119.9
C1	C6	C5	118.6	119.9
C1	C6	C61	125.0	120.0
C8	N7	HN7	109.2	120.0
N7	C8	N1	119.1	120.5
N7	C8	C7	120.4	120.5
C21	C2	C3	119.4	120.1
C2	C21	H211	120.0	109.5
C2	C21	H212	108.5	109.5
C2	C21	H213	108.5	109.5
C2	C3	C4	121.0	120.1
C2	C3	H3	120.5	119.9
H211	C21	H212	108.4	109.5
H211	C21	H213	108.4	109.5
H212	C21	H213	101.4	109.4
C4	C3	H3	118.5	120.0
C3	C4	C5	119.4	120.2
C3	C4	C41	119.0	119.9
C5	C4	C41	121.5	119.9
C4	C5	C6	120.7	120.1
C4	C5	H5	119.5	119.9
C4	C41	H411	119.0	109.4
C4	C41	H412	108.8	109.5
C4	C41	H413	108.7	109.5
C6	C5	H5	119.8	120.0
C5	C6	C61	116.4	120.1
C6	C61	H611	125.0	109.5
C6	C61	H612	106.7	109.4
C6	C61	H613	106.7	109.5
H611	C61	H612	106.7	109.5
H611	C61	H613	106.7	109.5
H612	C61	H613	102.8	109.4
N1	C8	C7	120.5	119.0
C8	N1	C9	123.6	120.6
C8	C7	C10	119.7	118.5
C8	C7	H7	120.2	120.8
N1	C9	N5	121.1	119.2
N1	C9	N3	117.7	121.6
N5	C9	N3	121.2	119.2
C9	N5	C11	126.8	120.0
C9	N5	HN5	106.1	120.0
C9	N3	C10	118.2	120.9
C11	N5	HN5	106.2	120.0
N5	C11	C12	117.5	119.9
N5	C11	C16	123.9	119.9
N3	C10	C7	120.2	119.3
N3	C10	H10	122.2	120.4
C7	C10	H10	117.6	120.3
C10	C7	H7	120.1	120.7
C12	C11	C16	118.6	120.2
C11	C12	C13	121.4	120.1
C11	C12	H12	118.5	120.0
C11	C16	C15	120.3	120.1
C11	C16	H16	120.4	119.9
C13	C12	H12	120.1	119.9
C12	C13	C14	120.2	119.9
C12	C13	H13	120.8	120.1
C14	C13	H13	119.1	120.0
C13	C14	C15	119.9	119.8
C13	C14	C17	116.2	120.1
C15	C14	C17	124.0	120.1
C14	C15	C16	119.7	119.9
C14	C15	H15	120.5	120.1
C14	C17	N6	177.2	180.0
C16	C15	H15	119.8	120.0
C15	C16	H16	119.4	120.0
H411	C41	H412	108.8	109.5
H411	C41	H413	108.8	109.4
H412	C41	H413	101.3	109.5

Torsion Angles for TPB

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	N7	C6	179.9	180.0
N7	C1	C2	C21	359.7	360.0
N7	C1	C2	C3	179.5	180.0
N7	C1	C6	C5	180.4	179.8
N7	C1	C6	C61	0.3	0.0
C8	N7	C1	HN7	125.3	180.0
C1	N7	C8	N1	359.2	179.8
C1	N7	C8	C7	178.8	0.0
N7	C1	C2	C6	180.1	180.0
C2	C1	N7	C8	259.4	120.0
C2	C1	N7	HN7	134.1	300.0
C2	C1	C6	C5	0.5	359.7
C2	C1	C6	C61	180.5	180.0
C21	C2	C1	C3	180.2	180.0
C1	C2	C21	H211	180.0	270.0
C1	C2	C21	H212	305.3	30.1
C1	C2	C21	H213	54.7	150.0
C1	C2	C3	C4	0.3	360.0
C1	C2	C3	H3	180.3	179.9
N7	C1	C6	C2	179.9	180.0
C6	C1	N7	C8	79.5	300.0
C6	C1	N7	HN7	314.3	120.0
C6	C1	C2	C21	179.6	180.0
C6	C1	C2	C3	359.4	0.0
C4	C5	C6	C1	359.9	0.6
C1	C6	C5	H5	179.9	180.0
C5	C6	C1	C61	180.1	179.7
C1	C6	C61	H611	180.0	90.0
C1	C6	C61	H612	305.3	210.0
C1	C6	C61	H613	54.7	329.9
C8	N7	C1	C2	259.4	120.0
C8	N7	C1	C6	79.5	300.0
C1	N7	C8	HN7	234.7	180.0
N1	C8	N7	C7	180.4	179.7
N7	C8	N1	C9	180.4	179.7
N7	C8	C7	C10	180.3	180.0
N7	C8	C7	H7	0.3	359.9
HN7	N7	C1	C2	134.1	300.0
HN7	N7	C1	C6	314.3	120.0
C1	N7	HN7	C8	130.1	180.0
HN7	N7	C8	N1	124.5	359.8
HN7	N7	C8	C7	304.1	180.0
C21	C2	C1	C6	179.6	180.0
C1	C2	C21	C3	179.8	180.0
C21	C2	C3	C4	180.0	180.0
C21	C2	C3	H3	0.0	359.9
H211	C21	C2	H212	234.7	240.0
H211	C21	C2	H213	125.3	120.0
H212	C21	C2	H213	250.6	240.0
C3	C2	C1	C6	359.4	0.0
C1	C2	C3	C21	180.2	180.0
C3	C2	C21	H211	0.2	90.0
C3	C2	C21	H212	125.5	210.0
C3	C2	C21	H213	234.9	330.0
C4	C3	C2	H3	180.0	180.0
C2	C3	C4	C5	0.2	0.3
C2	C3	C4	C41	180.0	179.9
H211	C21	C2	C3	0.2	90.0
C2	C21	H211	H212	125.3	120.0
C2	C21	H211	H213	234.7	240.0
H212	C21	H211	H213	109.4	119.9
H212	C21	C2	C3	125.5	210.0
C2	C21	H212	H211	228.2	240.0
C2	C21	H212	H213	114.1	120.0
H211	C21	H212	H213	246.0	240.0
H213	C21	C2	C3	234.9	330.0
C2	C21	H213	H211	131.9	120.0
C2	C21	H213	H212	245.9	240.0
H211	C21	H213	H212	114.0	120.0
C2	C3	C4	H3	180.0	180.0
C5	C4	C3	C41	180.2	180.3
C3	C4	C5	C6	359.8	359.4
C3	C4	C5	H5	179.8	179.9
C3	C4	C41	H411	180.0	90.0
C3	C4	C41	H412	305.3	210.0
C3	C4	C41	H413	54.7	330.1
C2	C3	H3	C4	180.0	180.0
H3	C3	C4	C5	180.2	180.3
H3	C3	C4	C41	360.0	360.0
C1	C6	C5	C4	359.9	0.6
C5	C4	C3	H3	180.2	180.3
C3	C4	C5	C41	179.8	179.7
C5	C4	C41	H411	359.8	269.6
C5	C4	C41	H412	125.1	29.6
C5	C4	C41	H413	234.5	149.7
C6	C5	C4	H5	180.0	179.5
C4	C5	C6	C61	180.0	180.3
C41	C4	C3	H3	360.0	360.0
C3	C4	C41	C5	180.2	180.3
C41	C4	C5	C6	179.9	179.8
C41	C4	C5	H5	359.9	0.3
H411	C41	C4	H412	234.7	240.0
H411	C41	C4	H413	125.3	119.9
H412	C41	C4	H413	250.6	239.9
C1	C6	C5	C61	179.9	180.3
C6	C5	C4	C41	179.9	179.8
C4	C5	C6	H5	180.0	180.5
C5	C6	C61	H611	359.9	270.3
C5	C6	C61	H612	125.2	30.3
C5	C6	C61	H613	234.6	150.2
H5	C5	C4	C41	359.9	0.3
C4	C5	H5	C6	180.0	179.5
H5	C5	C6	C61	359.9	359.8
C1	C6	C61	C5	180.1	179.7
C61	C6	C5	H5	359.9	359.8
H611	C61	C6	H612	234.7	240.0
H611	C61	C6	H613	125.3	120.1
H612	C61	C6	H613	250.6	240.1
C6	C61	H611	H612	125.3	120.0
C6	C61	H611	H613	234.7	239.9
H612	C61	H611	H613	109.4	120.0
C6	C61	H612	H611	224.2	240.0
C6	C61	H612	H613	112.1	120.0
H611	C61	H612	H613	247.9	240.0
C6	C61	H613	H611	135.7	120.1
C6	C61	H613	H612	247.9	240.1
H611	C61	H613	H612	112.1	120.0
N1	C8	N7	HN7	124.5	359.8
N7	C8	N1	C7	179.6	180.3
N1	C8	C7	C10	359.8	0.3
N1	C8	C7	H7	179.8	180.2
C8	N1	C9	N5	178.3	180.3
C8	N1	C9	N3	358.7	0.6
C7	C8	N7	HN7	304.1	180.0
N7	C8	C7	N1	180.4	179.7
C7	C8	N1	C9	0.9	359.4
N3	C10	C7	C8	360.0	359.9
C8	C7	C10	H10	180.0	179.9
C10	C7	C8	H7	180.0	180.1
C9	N1	C8	C7	0.9	359.4
N5	C9	N1	N3	179.6	179.7
N1	C9	N5	C11	346.0	174.7
N1	C9	N5	HN5	220.6	354.7
N1	C9	N3	C10	1.1	359.7
N1	C9	N5	N3	180.4	180.3
N5	C9	N3	C10	181.5	180.0
C11	N5	C9	HN5	125.3	180.0
C9	N5	C11	C12	197.1	326.1
C9	N5	C11	C16	18.4	145.9
N1	C9	N3	N5	179.6	179.7
N3	C9	N5	C11	165.5	354.4
N3	C9	N5	HN5	40.2	174.4
C9	N3	C10	C7	359.5	0.0
C9	N3	C10	H10	179.6	180.1
C11	N5	C9	N3	165.5	354.4
C9	N5	C11	HN5	234.7	180.0
C12	C11	N5	C16	178.8	180.3
N5	C11	C12	C13	180.3	180.0
N5	C11	C12	H12	0.3	360.0
N5	C11	C16	C15	179.6	179.8
N5	C11	C16	H16	359.7	0.2
HN5	N5	C9	N3	40.2	174.4
C9	N5	HN5	C11	137.1	180.0
HN5	N5	C11	C12	322.4	146.1
HN5	N5	C11	C16	143.6	325.9
C8	C7	C10	N3	360.0	359.9
C7	C10	N3	H10	180.0	180.0
N3	C10	C7	H7	180.0	180.1
C8	C7	C10	H7	180.0	179.9
N3	C10	C7	H10	180.0	180.0
N3	C10	H10	C7	180.0	180.0
H10	C10	C7	H7	360.0	0.0
C8	C7	H7	C10	180.0	180.1
H7	C7	C10	H10	360.0	0.0
C12	C11	N5	HN5	322.4	146.1
N5	C11	C12	C16	181.2	179.7
C12	C11	C16	C15	0.9	359.5
C12	C11	C16	H16	180.9	179.9
C13	C12	C11	H12	180.0	180.0
C11	C12	C13	C14	0.5	359.9
C11	C12	C13	H13	180.4	180.0
C16	C11	N5	HN5	143.6	325.9
N5	C11	C16	C12	178.8	180.3
C16	C11	C12	C13	359.1	0.3
C16	C11	C12	H12	179.1	180.3
C14	C15	C16	C11	359.5	0.5
C11	C16	C15	H15	179.5	180.3
C15	C16	C11	H16	180.0	179.6
C13	C12	C11	C16	359.1	0.3
C11	C12	C13	H12	180.0	180.0
C14	C13	C12	H13	180.0	179.9
C12	C13	C14	C15	359.9	0.0
C12	C13	C14	C17	181.0	180.0
H12	C12	C11	C16	179.1	180.3
C11	C12	H12	C13	180.0	180.0
H12	C12	C13	C14	180.5	180.0
H12	C12	C13	H13	0.4	0.0
C14	C13	C12	H12	180.5	180.0
C12	C13	C14	H13	180.0	180.1
C15	C14	C13	C17	179.0	180.0
C13	C14	C15	C16	0.1	359.8
C13	C14	C15	H15	180.1	179.9
C13	C14	C17	N6	8.2	5.5
H13	C13	C12	H12	0.4	0.0
C12	C13	H13	C14	180.0	179.9
H13	C13	C14	C15	179.9	180.0
H13	C13	C14	C17	1.0	360.0
C11	C16	C15	C14	359.5	0.5
C15	C14	C13	H13	179.9	180.0
C13	C14	C15	C17	181.1	180.0
C15	C14	C17	N6	189.3	185.5
C16	C15	C14	H15	180.0	179.9
C14	C15	C16	H16	179.5	180.0
C17	C14	C13	H13	1.0	360.0
C13	C14	C17	C15	178.9	180.0
C17	C14	C15	C16	179.0	179.8
C17	C14	C15	H15	359.0	360.0
C11	C16	C15	H16	180.0	180.4
C16	C15	C14	C17	179.0	179.8
C14	C15	C16	H15	180.0	180.1
H15	C15	C14	C17	359.0	360.0
C14	C15	H15	C16	180.0	179.9
H15	C15	C16	H16	359.5	359.9
C11	C16	H16	C15	180.0	179.6
H16	C16	C15	H15	359.5	359.9
C4	C41	H411	H412	125.3	120.0
C4	C41	H411	H413	234.8	240.0
H412	C41	H411	H413	109.5	120.0
C4	C41	H412	H411	229.0	240.0
C4	C41	H412	H413	114.4	120.0
H411	C41	H412	H413	245.5	240.0
C4	C41	H413	H411	131.0	119.9
C4	C41	H413	H412	245.6	240.0
H411	C41	H413	H412	114.5	120.0