PDB Chemical Component TPA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TPA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.489 |
1.531 |
| C1 |
C3 |
1.520 |
1.530 |
| C1 |
N |
1.464 |
1.469 |
| C1 |
H1 |
1.115 |
1.090 |
| C2 |
C3 |
1.483 |
1.531 |
| C2 |
C1' |
1.504 |
1.507 |
| C2 |
H2 |
1.116 |
1.090 |
| C3 |
H31 |
1.115 |
1.090 |
| C3 |
H32 |
1.115 |
1.090 |
| C1' |
C2' |
1.388 |
1.382 |
| C1' |
C6' |
1.389 |
1.382 |
| C2' |
C3' |
1.381 |
1.383 |
| C2' |
H2' |
1.103 |
1.079 |
| C3' |
C4' |
1.392 |
1.382 |
| C3' |
H3' |
1.102 |
1.079 |
| C4' |
C5' |
1.391 |
1.383 |
| C4' |
H4' |
1.102 |
1.080 |
| C5' |
C6' |
1.382 |
1.383 |
| C5' |
H5' |
1.103 |
1.080 |
| C6' |
H6' |
1.104 |
1.080 |
| N |
HN1 |
1.041 |
1.009 |
| N |
HN2 |
1.033 |
1.008 |
| N |
HN3 |
1.041 |
1.010 |
Bond Angles for TPA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C3 |
59.1 |
60.0 |
| C2 |
C1 |
N |
108.1 |
117.5 |
| C2 |
C1 |
H1 |
138.3 |
117.5 |
| C1 |
C2 |
C3 |
61.5 |
60.0 |
| C1 |
C2 |
C1' |
116.1 |
117.5 |
| C1 |
C2 |
H2 |
133.6 |
117.5 |
| C3 |
C1 |
N |
113.8 |
117.5 |
| C3 |
C1 |
H1 |
133.6 |
117.5 |
| C1 |
C3 |
C2 |
59.4 |
60.0 |
| C1 |
C3 |
H31 |
135.3 |
117.5 |
| C1 |
C3 |
H32 |
135.3 |
117.5 |
| N |
C1 |
H1 |
100.2 |
115.6 |
| C1 |
N |
HN1 |
105.4 |
109.4 |
| C1 |
N |
HN2 |
112.0 |
109.5 |
| C1 |
N |
HN3 |
108.6 |
109.4 |
| C3 |
C2 |
C1' |
114.0 |
117.5 |
| C3 |
C2 |
H2 |
135.4 |
117.5 |
| C2 |
C3 |
H31 |
135.3 |
117.5 |
| C2 |
C3 |
H32 |
135.3 |
117.5 |
| C1' |
C2 |
H2 |
95.9 |
115.5 |
| C2 |
C1' |
C2' |
119.6 |
120.0 |
| C2 |
C1' |
C6' |
118.3 |
120.0 |
| H31 |
C3 |
H32 |
70.1 |
115.5 |
| C2' |
C1' |
C6' |
121.8 |
120.1 |
| C1' |
C2' |
C3' |
119.0 |
120.0 |
| C1' |
C2' |
H2' |
120.7 |
120.1 |
| C1' |
C6' |
C5' |
118.9 |
120.0 |
| C1' |
C6' |
H6' |
120.8 |
120.1 |
| C3' |
C2' |
H2' |
120.3 |
120.0 |
| C2' |
C3' |
C4' |
119.6 |
120.0 |
| C2' |
C3' |
H3' |
119.8 |
120.0 |
| C4' |
C3' |
H3' |
120.6 |
120.0 |
| C3' |
C4' |
C5' |
120.9 |
120.0 |
| C3' |
C4' |
H4' |
119.6 |
120.0 |
| C5' |
C4' |
H4' |
119.5 |
120.0 |
| C4' |
C5' |
C6' |
119.7 |
120.0 |
| C4' |
C5' |
H5' |
120.5 |
120.0 |
| C6' |
C5' |
H5' |
119.7 |
120.0 |
| C5' |
C6' |
H6' |
120.3 |
119.9 |
| HN1 |
N |
HN2 |
107.3 |
109.6 |
| HN1 |
N |
HN3 |
107.2 |
109.4 |
| HN2 |
N |
HN3 |
115.7 |
109.5 |
Torsion Angles for TPA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C1 |
C2 |
N |
107.4 |
107.5 |
| C3 |
C1 |
C2 |
H1 |
237.7 |
252.5 |
| C2 |
C1 |
C3 |
C2 |
360.0 |
-0.0 |
| C2 |
C1 |
C3 |
H31 |
125.2 |
107.5 |
| C2 |
C1 |
C3 |
H32 |
234.8 |
252.5 |
| N |
C1 |
C2 |
H1 |
130.3 |
145.0 |
| C2 |
C1 |
N |
HN1 |
162.0 |
180.0 |
| C2 |
C1 |
N |
HN2 |
45.6 |
59.9 |
| C2 |
C1 |
N |
HN3 |
276.6 |
299.9 |
| C3 |
C2 |
C1 |
C1' |
104.4 |
107.5 |
| C3 |
C2 |
C1 |
H2 |
233.0 |
252.5 |
| C1 |
C2 |
C3 |
H31 |
234.7 |
252.5 |
| C1 |
C2 |
C3 |
H32 |
125.2 |
107.5 |
| C1' |
C2 |
C1 |
H2 |
128.6 |
145.1 |
| C1 |
C2 |
C1' |
C2' |
116.7 |
240.0 |
| C1 |
C2 |
C1' |
C6' |
291.1 |
59.7 |
| C2 |
C1 |
C3 |
N |
262.5 |
252.5 |
| C2 |
C1 |
C3 |
H1 |
129.2 |
107.5 |
| C3 |
C1 |
C2 |
C3 |
360.0 |
360.0 |
| C3 |
C1 |
C2 |
C1' |
255.6 |
252.5 |
| C3 |
C1 |
C2 |
H2 |
127.0 |
107.5 |
| N |
C1 |
C3 |
H1 |
226.7 |
215.0 |
| C3 |
C1 |
N |
HN1 |
98.6 |
111.3 |
| C3 |
C1 |
N |
HN2 |
342.2 |
351.2 |
| C3 |
C1 |
N |
HN3 |
213.2 |
231.2 |
| C1 |
C3 |
C2 |
C1' |
107.9 |
107.5 |
| C1 |
C3 |
C2 |
H2 |
235.5 |
252.5 |
| C2 |
C3 |
C1 |
H31 |
234.8 |
252.5 |
| C2 |
C3 |
C1 |
H32 |
125.2 |
107.5 |
| H31 |
C3 |
C1 |
H32 |
250.4 |
215.0 |
| C2 |
C1 |
N |
C3 |
63.4 |
68.7 |
| C2 |
C1 |
N |
H1 |
211.0 |
214.3 |
| N |
C1 |
C2 |
C3 |
252.6 |
252.5 |
| N |
C1 |
C2 |
C1' |
148.3 |
145.1 |
| N |
C1 |
C2 |
H2 |
19.7 |
0.0 |
| C3 |
C1 |
N |
H1 |
147.6 |
145.7 |
| N |
C1 |
C3 |
C2 |
97.5 |
107.5 |
| N |
C1 |
C3 |
H31 |
222.8 |
215.0 |
| N |
C1 |
C3 |
H32 |
332.3 |
0.0 |
| HN1 |
N |
C1 |
HN2 |
116.4 |
120.1 |
| HN1 |
N |
C1 |
HN3 |
245.4 |
240.1 |
| HN2 |
N |
C1 |
HN3 |
129.0 |
120.0 |
| C2 |
C1 |
H1 |
C3 |
269.9 |
291.3 |
| C2 |
C1 |
H1 |
N |
132.5 |
145.7 |
| H1 |
C1 |
C2 |
C3 |
122.3 |
107.5 |
| H1 |
C1 |
C2 |
C1' |
18.0 |
0.0 |
| H1 |
C1 |
C2 |
H2 |
249.4 |
215.0 |
| C3 |
C1 |
H1 |
N |
222.6 |
214.3 |
| H1 |
C1 |
C3 |
C2 |
230.8 |
252.5 |
| H1 |
C1 |
C3 |
H31 |
356.1 |
360.0 |
| H1 |
C1 |
C3 |
H32 |
105.6 |
145.0 |
| H1 |
C1 |
N |
HN1 |
311.0 |
325.6 |
| H1 |
C1 |
N |
HN2 |
194.6 |
205.5 |
| H1 |
C1 |
N |
HN3 |
65.6 |
85.5 |
| C3 |
C2 |
C1 |
C3 |
360.0 |
360.0 |
| C3 |
C2 |
C1 |
N |
252.6 |
252.5 |
| C3 |
C2 |
C1 |
H1 |
122.3 |
107.5 |
| C1 |
C2 |
C3 |
C1' |
252.1 |
252.5 |
| C1 |
C2 |
C3 |
H2 |
124.5 |
107.5 |
| C2 |
C3 |
C1 |
N |
97.5 |
107.5 |
| C2 |
C3 |
C1 |
H1 |
230.8 |
252.5 |
| C1 |
C3 |
C2 |
H31 |
125.3 |
107.5 |
| C1 |
C3 |
C2 |
H32 |
234.8 |
252.5 |
| C1' |
C2 |
C3 |
H2 |
232.4 |
215.0 |
| C3 |
C2 |
C1' |
C2' |
48.1 |
171.5 |
| C3 |
C2 |
C1' |
C6' |
222.5 |
351.1 |
| H31 |
C3 |
C2 |
H32 |
109.5 |
144.9 |
| C1' |
C2 |
C1 |
C3 |
255.6 |
252.5 |
| C1' |
C2 |
C1 |
N |
148.3 |
145.1 |
| C1' |
C2 |
C1 |
H1 |
18.0 |
0.0 |
| C1 |
C2 |
C1' |
C3 |
68.7 |
68.6 |
| C1 |
C2 |
C1' |
H2 |
214.7 |
214.3 |
| C3 |
C2 |
C1' |
H2 |
146.0 |
145.7 |
| C1' |
C2 |
C3 |
H31 |
342.6 |
360.0 |
| C1' |
C2 |
C3 |
H32 |
233.1 |
215.0 |
| C2' |
C1' |
C2 |
C6' |
185.6 |
180.3 |
| C2 |
C1' |
C2' |
C3' |
173.5 |
180.0 |
| C2 |
C1' |
C2' |
H2' |
353.5 |
359.9 |
| C2 |
C1' |
C6' |
C5' |
186.5 |
179.8 |
| C2 |
C1' |
C6' |
H6' |
6.4 |
0.3 |
| H2 |
C2 |
C1 |
C3 |
127.0 |
107.5 |
| H2 |
C2 |
C1 |
N |
19.7 |
0.0 |
| H2 |
C2 |
C1 |
H1 |
249.4 |
215.0 |
| C1 |
C2 |
H2 |
C3 |
268.4 |
291.4 |
| C1 |
C2 |
H2 |
C1' |
135.1 |
145.7 |
| C3 |
C2 |
H2 |
C1' |
226.7 |
214.3 |
| H2 |
C2 |
C3 |
H31 |
110.2 |
145.0 |
| H2 |
C2 |
C3 |
H32 |
0.7 |
0.0 |
| H2 |
C2 |
C1' |
C2' |
262.0 |
25.8 |
| H2 |
C2 |
C1' |
C6' |
76.4 |
205.5 |
| H31 |
C3 |
C1 |
N |
222.8 |
215.0 |
| H31 |
C3 |
C1 |
H1 |
356.1 |
360.0 |
| C1 |
C3 |
H31 |
C2 |
270.3 |
291.4 |
| C1 |
C3 |
H31 |
H32 |
135.2 |
145.7 |
| H31 |
C3 |
C2 |
C1' |
342.6 |
360.0 |
| H31 |
C3 |
C2 |
H2 |
110.2 |
145.0 |
| C2 |
C3 |
H31 |
H32 |
224.9 |
214.4 |
| H32 |
C3 |
C1 |
N |
332.3 |
0.0 |
| H32 |
C3 |
C1 |
H1 |
105.6 |
145.0 |
| C1 |
C3 |
H32 |
C2 |
89.6 |
68.6 |
| C1 |
C3 |
H32 |
H31 |
224.8 |
214.3 |
| H32 |
C3 |
C2 |
C1' |
233.1 |
215.0 |
| H32 |
C3 |
C2 |
H2 |
0.7 |
0.0 |
| C2 |
C3 |
H32 |
H31 |
135.2 |
145.6 |
| C2' |
C1' |
C2 |
H2 |
262.0 |
25.8 |
| C2 |
C1' |
C2' |
C6' |
174.2 |
179.7 |
| C2' |
C1' |
C6' |
C5' |
0.7 |
359.5 |
| C2' |
C1' |
C6' |
H6' |
180.7 |
179.9 |
| C3' |
C2' |
C1' |
H2' |
180.0 |
180.1 |
| C1' |
C2' |
C3' |
C4' |
0.1 |
359.9 |
| C1' |
C2' |
C3' |
H3' |
180.1 |
179.9 |
| C6' |
C1' |
C2 |
H2 |
76.4 |
205.5 |
| C2 |
C1' |
C6' |
C2' |
185.7 |
180.3 |
| C6' |
C1' |
C2' |
C3' |
359.3 |
0.4 |
| C6' |
C1' |
C2' |
H2' |
179.3 |
180.3 |
| C4' |
C5' |
C6' |
C1' |
359.9 |
0.4 |
| C1' |
C6' |
C5' |
H5' |
179.9 |
180.3 |
| C5' |
C6' |
C1' |
H6' |
180.1 |
179.6 |
| C3' |
C2' |
C1' |
C6' |
359.3 |
0.4 |
| C1' |
C2' |
C3' |
H2' |
180.0 |
179.9 |
| C4' |
C3' |
C2' |
H3' |
179.9 |
180.0 |
| C2' |
C3' |
C4' |
C5' |
0.5 |
360.0 |
| C2' |
C3' |
C4' |
H4' |
180.5 |
180.0 |
| H2' |
C2' |
C1' |
C6' |
179.3 |
180.3 |
| C1' |
C2' |
H2' |
C3' |
180.0 |
180.1 |
| H2' |
C2' |
C3' |
C4' |
180.1 |
180.0 |
| H2' |
C2' |
C3' |
H3' |
0.1 |
0.0 |
| C4' |
C3' |
C2' |
H2' |
180.1 |
180.0 |
| C2' |
C3' |
C4' |
H3' |
180.1 |
180.0 |
| C5' |
C4' |
C3' |
H4' |
180.0 |
180.0 |
| C3' |
C4' |
C5' |
C6' |
359.5 |
359.9 |
| C3' |
C4' |
C5' |
H5' |
179.5 |
180.0 |
| H3' |
C3' |
C2' |
H2' |
0.1 |
0.0 |
| C2' |
C3' |
H3' |
C4' |
179.9 |
180.0 |
| H3' |
C3' |
C4' |
C5' |
180.5 |
180.0 |
| H3' |
C3' |
C4' |
H4' |
0.5 |
360.0 |
| C1' |
C6' |
C5' |
C4' |
359.9 |
0.4 |
| C5' |
C4' |
C3' |
H3' |
180.5 |
180.0 |
| C3' |
C4' |
C5' |
H4' |
180.0 |
180.0 |
| C6' |
C5' |
C4' |
H5' |
180.0 |
179.9 |
| C4' |
C5' |
C6' |
H6' |
179.9 |
180.0 |
| H4' |
C4' |
C3' |
H3' |
0.5 |
360.0 |
| C3' |
C4' |
H4' |
C5' |
180.0 |
180.0 |
| H4' |
C4' |
C5' |
C6' |
179.5 |
179.8 |
| H4' |
C4' |
C5' |
H5' |
359.5 |
360.0 |
| C1' |
C6' |
C5' |
H6' |
179.9 |
180.4 |
| C6' |
C5' |
C4' |
H4' |
179.5 |
179.8 |
| C4' |
C5' |
C6' |
H5' |
180.0 |
180.1 |
| H5' |
C5' |
C4' |
H4' |
359.5 |
360.0 |
| C4' |
C5' |
H5' |
C6' |
180.0 |
179.9 |
| H5' |
C5' |
C6' |
H6' |
359.9 |
359.8 |
| C1' |
C6' |
H6' |
C5' |
180.1 |
179.6 |
| H6' |
C6' |
C5' |
H5' |
359.9 |
359.8 |
| HN1 |
N |
C1 |
H1 |
311.0 |
325.6 |
| C1 |
N |
HN1 |
HN2 |
240.5 |
239.9 |
| C1 |
N |
HN1 |
HN3 |
115.6 |
119.9 |
| HN2 |
N |
HN1 |
HN3 |
235.1 |
240.0 |
| HN2 |
N |
C1 |
H1 |
194.6 |
205.5 |
| C1 |
N |
HN2 |
HN1 |
115.2 |
120.0 |
| C1 |
N |
HN2 |
HN3 |
234.8 |
240.0 |
| HN1 |
N |
HN2 |
HN3 |
119.6 |
120.0 |
| HN3 |
N |
C1 |
H1 |
65.6 |
85.5 |
| C1 |
N |
HN3 |
HN1 |
246.6 |
240.1 |
| C1 |
N |
HN3 |
HN2 |
126.9 |
120.0 |
| HN1 |
N |
HN3 |
HN2 |
240.3 |
239.9 |