PDB Chemical Component TP7

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TP7

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.452 1.465
N C1 1.351 1.348
P O1P 1.514 1.479
P O2P 1.611 1.610
P O3P 1.506 1.610
P O4P 1.520 1.609
O4P CB 3.812 1.429
CB CA 1.527 1.530
CB CG 1.514 1.530
C O 1.278 1.343
C OXT 1.253 1.208
C CA 1.516 1.506
O1 C1 1.246 1.213
C1 C2 1.517 1.507
C2 C3 1.524 1.530
C3 C4 1.568 1.530
C4 C5 1.546 1.530
C5 C6 1.525 1.530
C6 C7 1.540 1.530
C7 S7 1.806 1.814
N H   0.969
CA HA   1.090
O2P H2P   0.967
O3P H3P   0.967
CB HB   1.090
CG HG1C   1.091
CG HG2C   1.090
CG HG3C   1.090
O HC   0.967
C2 H21C   1.091
C2 H22C   1.089
C3 H31C   1.090
C3 H32C   1.090
C4 H41C   1.090
C4 H42C   1.090
C5 H51C   1.090
C5 H52C   1.090
C6 H61C   1.090
C6 H62C   1.090
C7 H71C   1.090
C7 H72C   1.090
S7 H7   1.345

Bond Angles for TP7

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N C1 123.2 120.0
N CA CB 111.9 109.4
N CA C 109.7 109.5
CA N H   120.0
N CA HA   109.5
N C1 O1 120.5 120.0
N C1 C2 116.2 120.0
C1 N H   120.0
O1P P O2P 107.7 109.5
O1P P O3P 113.9 109.5
O1P P O4P 112.7 109.5
O2P P O3P 108.1 109.5
O2P P O4P 101.7 109.4
P O2P H2P   114.0
O3P P O4P 111.9 109.5
P O3P H3P   114.0
P O4P CB 33.1 123.0
O4P CB CA 114.1 109.5
O4P CB CG 115.6 109.5
O4P CB HB   109.4
CA CB CG 114.6 109.5
CB CA C 110.6 109.5
CB CA HA   109.4
CA CB HB   109.5
CG CB HB   109.4
CB CG HG1C   109.5
CB CG HG2C   109.5
CB CG HG3C   109.5
O C OXT 125.8 119.9
O C CA 117.5 120.0
C O HC   117.0
OXT C CA 116.6 120.0
C CA HA   109.5
O1 C1 C2 123.3 120.0
C1 C2 C3 112.1 109.5
C1 C2 H21C   109.4
C1 C2 H22C   109.5
C2 C3 C4 111.5 109.5
C3 C2 H21C   109.4
C3 C2 H22C   109.5
C2 C3 H31C   109.4
C2 C3 H32C   109.5
C3 C4 C5 114.0 109.5
C4 C3 H31C   109.5
C4 C3 H32C   109.5
C3 C4 H41C   109.5
C3 C4 H42C   109.5
C4 C5 C6 115.4 109.4
C5 C4 H41C   109.5
C5 C4 H42C   109.5
C4 C5 H51C   109.5
C4 C5 H52C   109.5
C5 C6 C7 110.1 109.4
C6 C5 H51C   109.5
C6 C5 H52C   109.5
C5 C6 H61C   109.5
C5 C6 H62C   109.5
C6 C7 S7 112.8 109.4
C7 C6 H61C   109.5
C7 C6 H62C   109.5
C6 C7 H71C   109.5
C6 C7 H72C   109.5
S7 C7 H71C   109.4
S7 C7 H72C   109.5
C7 S7 H7   103.0
HG1C CG HG2C   109.4
HG1C CG HG3C   109.4
HG2C CG HG3C   109.4
H21C C2 H22C   109.5
H31C C3 H32C   109.5
H41C C4 H42C   109.5
H51C C5 H52C   109.5
H61C C6 H62C   109.5
H71C C7 H72C   109.5

Torsion Angles for TP7

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CA N C1 O1 349.5 359.9
CA N C1 C2 168.3 180.0
C1 N CA H   180.3
O4P CB CA N 83.1 65.0
N CA CB CG 306.7 305.0
CB CA N C 236.8 240.0
CB CA N HA   119.9
N CA CB HB   185.0
O C CA N 332.9 180.0
OXT C CA N 151.4 0.0
C CA N HA   239.9
C1 N CA CB 104.4 155.0
C1 N CA C 227.6 275.0
CA N C1 H   179.7
C1 N CA HA   35.1
O1 C1 N C2 181.3 180.0
N C1 C2 C3 205.0 180.0
N C1 C2 H21C   299.9
N C1 C2 H22C   59.9
O2P P O1P O3P 119.8 240.0
O2P P O1P O4P 248.7 120.0
O1P P O2P H2P   180.0
O3P P O1P O4P 128.9 240.0
O1P P O3P H3P   300.0
O1P P O4P CB 251.4 55.0
O1P P O2P O3P 236.5 120.0
O1P P O2P O4P 118.7 240.0
O3P P O2P O4P 242.1 120.0
O2P P O3P H3P   60.0
O2P P O4P CB 6.4 295.0
O1P P O3P O2P 119.6 240.0
O1P P O3P O4P 230.7 120.0
O2P P O3P O4P 111.1 240.0
O3P P O2P H2P   60.0
O3P P O4P CB 121.5 175.0
O1P P O4P O2P 245.0 120.0
O1P P O4P O3P 129.9 240.0
O2P P O4P O3P 244.9 120.0
O4P P O2P H2P   300.0
O4P P O3P H3P   179.9
P O4P CB CA 146.8 120.0
P O4P CB CG 282.7 240.1
P O4P CB HB   360.0
N CA CB O4P 83.1 65.0
CA CB O4P CG 224.0 240.0
O4P CB CA C 320.5 305.0
O4P CB CA HA   185.0
CA CB O4P HB   120.0
CG CB O4P HB   240.1
O4P CB CG HG1C   180.0
O4P CB CG HG2C   299.9
O4P CB CG HG3C   59.9
CB CA N C1 104.4 155.0
N CA CB C 122.6 120.0
CB CA N H   334.7
N CA CB HA   240.0
O4P CB CA CG 136.4 120.0
O4P CB CA HB   240.0
CG CB CA HB   120.0
CA CB CG HG1C   300.0
CA CB CG HG2C   60.0
CA CB CG HG3C   180.0
O C CA CB 96.9 300.0
OXT C CA CB 275.3 120.0
C CA CB HA   120.0
O4P CB CG CA 224.2 240.0
O4P CB CG HB   119.9
CG CB CA C 184.1 185.0
CG CB CA HA   65.0
CA CB CG HB   240.0
HG1C CG CB HG2C   240.0
HG1C CG CB HG3C   120.0
HG2C CG CB HG3C   240.0
N CA C O 332.9 180.0
CB CA C O 96.9 300.0
OXT C O CA 181.7 180.0
O C CA HA   60.0
N CA C OXT 151.4 0.0
CB CA C OXT 275.3 120.0
O C OXT CA 178.3 180.0
OXT C O HC   0.0
OXT C CA HA   240.0
C CA N C1 227.6 275.0
N CA C CB 236.1 240.0
C CA N H   94.7
N CA C HA   120.1
C CA CB CG 184.1 185.0
CB CA C HA   240.0
C CA CB HB   65.0
O C CA OXT 181.6 180.0
CA C O HC   180.0
N C1 O1 C2 178.6 180.0
O1 C1 N H   180.3
O1 C1 C2 C3 23.7 0.0
O1 C1 C2 H21C   120.0
O1 C1 C2 H22C   240.0
N C1 C2 O1 181.3 180.0
C2 C1 N H   0.3
C1 C2 C3 C4 167.1 180.0
C3 C2 C1 H21C   240.1
C3 C2 C1 H22C   120.1
C1 C2 C3 H31C   299.9
C1 C2 C3 H32C   60.0
H21C C2 C1 H22C   240.0
C1 C2 C3 H21C   119.9
C1 C2 C3 H22C   240.0
C2 C3 C4 C5 58.1 180.0
C4 C3 C2 H31C   240.0
C4 C3 C2 H32C   120.0
C2 C3 C4 H41C   300.0
C2 C3 C4 H42C   60.0
H21C C2 C3 H22C   120.0
H31C C3 C2 H32C   240.0
C4 C3 C2 H21C   60.0
C4 C3 C2 H22C   300.0
C2 C3 C4 H31C   120.0
C2 C3 C4 H32C   240.0
C3 C4 C5 C6 60.9 180.0
C5 C4 C3 H41C   240.0
C5 C4 C3 H42C   120.0
C3 C4 C5 H51C   300.0
C3 C4 C5 H52C   60.0
H31C C3 C4 H32C   120.0
H41C C4 C3 H42C   240.0
C5 C4 C3 H31C   60.0
C5 C4 C3 H32C   300.0
C3 C4 C5 H41C   120.0
C3 C4 C5 H42C   240.0
C4 C5 C6 C7 63.9 180.0
C6 C5 C4 H51C   240.0
C6 C5 C4 H52C   120.0
C4 C5 C6 H61C   300.0
C4 C5 C6 H62C   60.0
H41C C4 C5 H42C   120.0
H51C C5 C4 H52C   240.0
C6 C5 C4 H41C   60.0
C6 C5 C4 H42C   300.0
C4 C5 C6 H51C   120.0
C4 C5 C6 H52C   240.0
C5 C6 C7 S7 179.1 180.0
C7 C6 C5 H61C   240.0
C7 C6 C5 H62C   120.0
C5 C6 C7 H71C   300.0
C5 C6 C7 H72C   60.0
H51C C5 C6 H52C   120.0
H61C C6 C5 H62C   240.0
C7 C6 C5 H51C   60.0
C7 C6 C5 H52C   300.0
C5 C6 C7 H61C   120.0
C5 C6 C7 H62C   240.0
S7 C7 C6 H71C   240.0
S7 C7 C6 H72C   120.0
C6 C7 S7 H7   180.0
H61C C6 C7 H62C   120.0
H71C C7 C6 H72C   239.9
S7 C7 C6 H61C   60.0
S7 C7 C6 H62C   300.0
C6 C7 S7 H71C   120.0
C6 C7 S7 H72C   240.0
H71C C7 S7 H72C   120.0
CA N H C1   180.3
H N CA CB   334.7
H N CA C   94.7
H N CA HA   214.8
H N C1 O1   180.3
H N C1 C2   0.3
HA CA N C1   35.1
N CA HA CB   119.9
N CA HA C   239.9
HA CA N H   214.8
HA CA CB CG   65.0
CB CA HA C   120.0
HA CA CB HB   305.0
H2P O2P P O3P   60.0
H2P O2P P O4P   300.0
H3P O3P P O4P   179.9
O4P CB HB CA   120.0
O4P CB HB CG   240.1
CA CB HB CG   120.0
HB CB CA C   65.0
HB CB CA HA   305.0
HB CB CG HG1C   60.1
HB CB CG HG2C   180.0
HB CB CG HG3C   300.0
HG1C CG CB HB   60.1
CB CG HG1C HG2C   120.0
CB CG HG1C HG3C   239.9
HG2C CG HG1C HG3C   119.9
HG2C CG CB HB   180.0
CB CG HG2C HG1C   240.0
CB CG HG2C HG3C   120.1
HG1C CG HG2C HG3C   240.1
HG3C CG CB HB   300.0
CB CG HG3C HG1C   120.0
CB CG HG3C HG2C   239.9
HG1C CG HG3C HG2C   119.9
HC O C OXT   0.0
HC O C CA   180.0
C1 C2 H21C C3   240.0
C1 C2 H21C H22C   120.0
H21C C2 C3 C4   60.0
C3 C2 H21C H22C   240.0
H21C C2 C3 H31C   180.0
H21C C2 C3 H32C   300.0
C1 C2 H22C C3   120.0
C1 C2 H22C H21C   240.0
H22C C2 C3 C4   300.0
C3 C2 H22C H21C   120.0
H22C C2 C3 H31C   60.0
H22C C2 C3 H32C   180.0
C2 C3 H31C C4   240.0
H31C C3 C2 H21C   180.0
H31C C3 C2 H22C   60.0
C2 C3 H31C H32C   120.0
H31C C3 C4 C5   60.0
C4 C3 H31C H32C   240.0
H31C C3 C4 H41C   180.0
H31C C3 C4 H42C   300.0
C2 C3 H32C C4   120.0
H32C C3 C2 H21C   300.0
H32C C3 C2 H22C   180.0
C2 C3 H32C H31C   240.0
H32C C3 C4 C5   300.0
C4 C3 H32C H31C   120.0
H32C C3 C4 H41C   60.0
H32C C3 C4 H42C   180.0
C3 C4 H41C C5   240.0
H41C C4 C3 H31C   180.0
H41C C4 C3 H32C   60.0
C3 C4 H41C H42C   120.0
H41C C4 C5 C6   60.0
C5 C4 H41C H42C   240.0
H41C C4 C5 H51C   180.0
H41C C4 C5 H52C   300.0
C3 C4 H42C C5   120.0
H42C C4 C3 H31C   300.0
H42C C4 C3 H32C   180.0
C3 C4 H42C H41C   240.0
H42C C4 C5 C6   300.0
C5 C4 H42C H41C   120.0
H42C C4 C5 H51C   60.0
H42C C4 C5 H52C   180.0
C4 C5 H51C C6   240.0
H51C C5 C4 H41C   180.0
H51C C5 C4 H42C   60.0
C4 C5 H51C H52C   120.0
H51C C5 C6 C7   60.0
C6 C5 H51C H52C   240.0
H51C C5 C6 H61C   180.0
H51C C5 C6 H62C   300.0
C4 C5 H52C C6   120.0
H52C C5 C4 H41C   300.0
H52C C5 C4 H42C   180.0
C4 C5 H52C H51C   240.0
H52C C5 C6 C7   300.0
C6 C5 H52C H51C   120.0
H52C C5 C6 H61C   60.0
H52C C5 C6 H62C   180.0
C5 C6 H61C C7   240.0
H61C C6 C5 H51C   180.0
H61C C6 C5 H52C   60.0
C5 C6 H61C H62C   120.0
H61C C6 C7 S7   60.0
C7 C6 H61C H62C   240.0
H61C C6 C7 H71C   180.0
H61C C6 C7 H72C   300.0
C5 C6 H62C C7   120.0
H62C C6 C5 H51C   300.0
H62C C6 C5 H52C   180.0
C5 C6 H62C H61C   240.0
H62C C6 C7 S7   300.0
C7 C6 H62C H61C   120.0
H62C C6 C7 H71C   59.9
H62C C6 C7 H72C   180.0
C6 C7 H71C S7   240.0
H71C C7 C6 H61C   180.0
H71C C7 C6 H62C   59.9
C6 C7 H71C H72C   120.0
S7 C7 H71C H72C   240.0
H71C C7 S7 H7   60.0
C6 C7 H72C S7   120.0
H72C C7 C6 H61C   300.0
H72C C7 C6 H62C   180.0
C6 C7 H72C H71C   239.9
S7 C7 H72C H71C   119.9
H72C C7 S7 H7   300.0
H7 S7 C7 H71C   60.0
H7 S7 C7 H72C   300.0