PDB Chemical Component TOX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TOX
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.255 |
1.209 |
| CH2 |
CZ3 |
1.420 |
1.388 |
| CH2 |
CZ2 |
1.350 |
1.379 |
| CZ3 |
CE3 |
1.316 |
1.367 |
| C |
CA |
1.566 |
1.506 |
| CZ2 |
CE2 |
1.344 |
1.391 |
| CE3 |
CD2 |
1.407 |
1.396 |
| CE2 |
CD2 |
1.410 |
1.407 |
| CE2 |
NE1 |
1.367 |
1.377 |
| CD2 |
CG |
1.400 |
1.465 |
| O2 |
O1 |
1.492 |
1.469 |
| CA |
N |
1.468 |
1.469 |
| CA |
CB |
1.568 |
1.530 |
| NE1 |
CD1 |
1.383 |
1.369 |
| CG |
CD1 |
1.367 |
1.342 |
| CG |
CB |
1.503 |
1.508 |
| NE1 |
O1 |
2.365 |
1.416 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.010 |
| CA |
HA |
1.100 |
1.089 |
| CB |
H5 |
1.100 |
1.090 |
| CB |
H6 |
1.100 |
1.089 |
| CD1 |
H7 |
1.081 |
1.079 |
| CE3 |
H8 |
1.080 |
1.079 |
| CZ3 |
H9 |
1.080 |
1.080 |
| CH2 |
H10 |
1.080 |
1.080 |
| CZ2 |
H11 |
1.080 |
1.080 |
| O2 |
H13 |
0.950 |
0.967 |
| C |
OXT |
|
1.342 |
| OXT |
HXT |
|
0.967 |
Bond Angles for TOX
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
|
120.0 |
| CH2 |
CZ3 |
H9 |
119.9 |
119.7 |
| CZ2 |
CH2 |
H10 |
118.4 |
119.7 |
| CH2 |
CZ2 |
H11 |
121.7 |
120.1 |
| CZ3 |
CE3 |
H8 |
120.8 |
120.1 |
| C |
CA |
HA |
106.2 |
109.5 |
| CE2 |
NE1 |
O1 |
145.8 |
125.1 |
| NE1 |
O1 |
O2 |
129.2 |
114.0 |
| O1 |
O2 |
H13 |
109.5 |
114.0 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| CB |
CA |
HA |
106.1 |
109.4 |
| CA |
CB |
H5 |
108.3 |
109.5 |
| CA |
CB |
H6 |
108.2 |
109.5 |
| NE1 |
CD1 |
H7 |
124.9 |
125.0 |
| CG |
CD1 |
H7 |
124.9 |
125.1 |
| CG |
CB |
H5 |
108.2 |
109.5 |
| CG |
CB |
H6 |
108.3 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| H5 |
CB |
H6 |
109.5 |
109.5 |
| C |
OXT |
HXT |
|
117.0 |
Torsion Angles for TOX
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
HA |
17.4 |
220.0 |
| O |
C |
OXT |
HXT |
|
359.9 |
| CH2 |
CZ3 |
CE3 |
H8 |
183.3 |
180.0 |
| CZ2 |
CH2 |
CZ3 |
H9 |
177.6 |
180.5 |
| C |
CA |
N |
H |
180.0 |
296.1 |
| C |
CA |
N |
H2 |
300.0 |
59.9 |
| CB |
CA |
C |
HA |
243.2 |
240.0 |
| C |
CA |
CB |
H5 |
134.4 |
295.0 |
| C |
CA |
CB |
H6 |
253.0 |
55.0 |
| CZ2 |
CE2 |
NE1 |
O1 |
341.3 |
0.4 |
| CD2 |
CE2 |
NE1 |
O1 |
160.2 |
179.8 |
| CE2 |
NE1 |
O1 |
O2 |
336.4 |
269.9 |
| CE2 |
NE1 |
CD1 |
H7 |
180.4 |
180.0 |
| CD2 |
CG |
CD1 |
H7 |
178.6 |
180.2 |
| CD2 |
CG |
CB |
H5 |
303.3 |
324.7 |
| CD2 |
CG |
CB |
H6 |
184.8 |
204.7 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| C |
CA |
CB |
HA |
116.9 |
120.0 |
| CB |
CA |
N |
H |
51.2 |
176.1 |
| CB |
CA |
N |
H2 |
171.2 |
300.0 |
| CG |
CB |
CA |
H5 |
239.3 |
240.0 |
| CG |
CB |
CA |
H6 |
120.7 |
120.0 |
| H5 |
CB |
CA |
H6 |
241.4 |
240.0 |
| CG |
CD1 |
NE1 |
H7 |
180.0 |
180.0 |
| NE1 |
CD1 |
CG |
H7 |
180.0 |
180.0 |
| CD1 |
CG |
CB |
H5 |
122.8 |
145.0 |
| CD1 |
CG |
CB |
H6 |
4.3 |
25.0 |
| CG |
CB |
CA |
HA |
256.8 |
55.0 |
| CA |
CB |
CG |
H5 |
120.7 |
120.0 |
| CA |
CB |
CG |
H6 |
239.3 |
240.0 |
| H5 |
CB |
CG |
H6 |
118.6 |
120.0 |
| NE1 |
O1 |
O2 |
H13 |
180.0 |
180.0 |
| O1 |
NE1 |
CD1 |
H7 |
12.2 |
359.9 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| HA |
CA |
N |
H |
295.6 |
56.2 |
| HA |
CA |
N |
H2 |
55.6 |
180.0 |
| HA |
CA |
CB |
H5 |
17.5 |
174.9 |
| HA |
CA |
CB |
H6 |
136.1 |
295.0 |
| H5 |
CB |
CA |
HA |
17.5 |
174.9 |
| CA |
CB |
H5 |
H6 |
117.8 |
120.0 |
| CG |
CB |
H5 |
H6 |
242.2 |
240.0 |
| H6 |
CB |
CA |
HA |
136.1 |
295.0 |
| CA |
CB |
H6 |
H5 |
242.2 |
240.0 |
| CG |
CB |
H6 |
H5 |
117.8 |
120.0 |
| H9 |
CZ3 |
CE3 |
H8 |
3.2 |
360.0 |
| H10 |
CH2 |
CZ3 |
H9 |
357.6 |
0.0 |
| H10 |
CH2 |
CZ2 |
H11 |
0.4 |
0.5 |
| H11 |
CZ2 |
CH2 |
H10 |
0.4 |
0.5 |
| OXT |
C |
CA |
HA |
|
39.9 |