PDB Chemical Component TOP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TOP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	N2	1.338	1.324
C1	C8	1.372	1.382
C1	H1	1.103	1.080
N2	C3	1.302	1.326
C3	N4	1.363	1.383
C3	N5	1.354	1.324
N4	HN41	1.021	0.970
N4	HN42	1.020	0.969
N5	C6	1.337	1.329
C6	N7	1.351	1.385
C6	C8	1.385	1.396
N7	HN71	1.020	0.970
N7	HN72	1.020	0.971
C8	C9	1.536	1.506
C9	C10	1.531	1.506
C9	H91	1.115	1.090
C9	H92	1.114	1.090
C10	C11	1.390	1.382
C10	C21	1.419	1.382
C11	C12	1.399	1.386
C11	H11	1.103	1.080
C12	O13	1.371	1.359
C12	C15	1.408	1.390
O13	C14	1.407	1.429
C14	H141	1.114	1.090
C14	H142	1.115	1.089
C14	H143	1.116	1.090
C15	O16	1.410	1.362
C15	C18	1.391	1.388
O16	C17	1.391	1.428
C17	H171	1.115	1.091
C17	H172	1.116	1.090
C17	H173	1.115	1.089
C18	O19	1.397	1.360
C18	C21	1.404	1.387
O19	C20	1.431	1.428
C20	H201	1.114	1.090
C20	H202	1.115	1.090
C20	H203	1.115	1.090
C21	H21	1.104	1.080

Bond Angles for TOP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N2	C1	C8	119.8	119.3
N2	C1	H1	118.8	120.4
C1	N2	C3	116.9	120.9
C8	C1	H1	121.4	120.3
C1	C8	C6	119.5	118.4
C1	C8	C9	120.7	120.8
N2	C3	N4	119.4	119.2
N2	C3	N5	128.3	121.6
N4	C3	N5	112.2	119.2
C3	N4	HN41	119.4	120.0
C3	N4	HN42	108.7	120.1
C3	N5	C6	114.5	120.6
HN41	N4	HN42	108.6	120.0
N5	C6	N7	119.3	120.5
N5	C6	C8	120.9	119.1
N7	C6	C8	119.7	120.5
C6	N7	HN71	119.3	120.0
C6	N7	HN72	108.7	120.0
C6	C8	C9	119.7	120.8
HN71	N7	HN72	108.7	120.0
C8	C9	C10	118.7	109.5
C8	C9	H91	108.8	109.5
C8	C9	H92	108.9	109.5
C10	C9	H91	108.9	109.5
C10	C9	H92	108.9	109.5
C9	C10	C11	117.1	119.9
C9	C10	C21	121.8	119.9
H91	C9	H92	101.2	109.4
C11	C10	C21	121.1	120.1
C10	C11	C12	120.7	120.1
C10	C11	H11	119.3	119.9
C10	C21	C18	118.0	120.1
C10	C21	H21	121.5	120.0
C12	C11	H11	120.0	119.9
C11	C12	O13	122.1	120.1
C11	C12	C15	118.3	119.9
O13	C12	C15	119.6	120.1
C12	O13	C14	117.6	106.8
C12	C15	O16	120.9	120.0
C12	C15	C18	121.4	119.8
O13	C14	H141	117.6	109.5
O13	C14	H142	109.3	109.5
O13	C14	H143	109.3	109.4
H141	C14	H142	109.4	109.5
H141	C14	H143	109.2	109.4
H142	C14	H143	100.8	109.5
O16	C15	C18	117.7	120.1
C15	O16	C17	107.1	106.8
C15	C18	O19	116.0	120.1
C15	C18	C21	120.5	119.9
O16	C17	H171	107.1	109.5
O16	C17	H172	113.1	109.5
O16	C17	H173	113.1	109.6
H171	C17	H172	113.1	109.4
H171	C17	H173	113.1	109.4
H172	C17	H173	97.3	109.4
O19	C18	C21	123.5	120.0
C18	O19	C20	110.2	106.9
C18	C21	H21	120.5	119.9
O19	C20	H201	110.2	109.5
O19	C20	H202	112.0	109.5
O19	C20	H203	112.0	109.5
H201	C20	H202	111.9	109.4
H201	C20	H203	112.0	109.4
H202	C20	H203	98.4	109.5

Torsion Angles for TOP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C8	C1	N2	H1	180.0	180.0
N2	C1	C8	C6	4.4	0.3
N2	C1	C8	C9	181.2	180.0
C1	N2	C3	N4	178.0	180.0
C1	N2	C3	N5	1.4	360.0
N2	C1	C8	H1	180.0	180.0
C8	C1	N2	C3	356.6	360.0
N5	C6	C8	C1	356.7	359.5
N7	C6	C8	C1	180.0	180.0
C6	C8	C1	C9	183.2	180.3
C1	C8	C9	C10	359.1	90.0
C1	C8	C9	H91	124.4	330.0
C1	C8	C9	H92	233.8	210.0
N2	C1	H1	C8	180.0	180.0
H1	C1	N2	C3	176.6	180.0
H1	C1	C8	C6	184.4	180.3
H1	C1	C8	C9	1.2	360.0
C3	N2	C1	C8	356.6	360.0
C3	N2	C1	H1	176.6	180.0
N4	C3	N2	N5	176.6	180.0
N2	C3	N4	HN41	180.0	0.1
N2	C3	N4	HN42	54.8	180.0
N2	C3	N5	C6	359.7	359.7
N2	C3	N4	N5	182.9	180.0
N4	C3	N5	C6	182.9	179.8
HN41	N4	C3	HN42	125.2	180.0
N2	C3	N5	N4	176.8	180.0
N5	C3	N4	HN41	357.1	180.0
N5	C3	N4	HN42	231.8	0.0
C3	N5	C6	N7	177.9	180.0
C3	N5	C6	C8	1.2	0.5
HN41	N4	C3	N5	357.1	180.0
C3	N4	HN41	HN42	234.7	180.0
HN42	N4	C3	N5	231.8	0.0
C3	N4	HN42	HN41	131.4	180.0
C1	C8	C6	N5	356.7	359.5
N7	C6	N5	C8	176.7	179.5
N5	C6	N7	HN71	180.0	360.0
N5	C6	N7	HN72	54.7	180.0
N5	C6	C8	C9	179.9	179.8
C1	C8	C6	N7	180.0	180.0
N5	C6	N7	C8	183.2	180.5
N7	C6	C8	C9	3.1	0.3
HN71	N7	C6	HN72	125.3	180.0
C6	C8	C1	H1	184.4	180.3
C1	C8	C6	C9	176.9	179.7
N5	C6	C8	N7	176.7	179.5
C8	C6	N7	HN71	356.8	179.5
C8	C6	N7	HN72	231.5	359.5
C6	C8	C9	C10	176.0	269.7
C6	C8	C9	H91	301.2	149.7
C6	C8	C9	H92	50.7	29.8
HN71	N7	C6	C8	356.8	179.5
C6	N7	HN71	HN72	234.7	180.0
HN72	N7	C6	C8	231.5	359.5
C6	N7	HN72	HN71	131.3	180.0
C9	C8	C1	H1	1.2	360.0
C1	C8	C9	C6	183.2	180.3
C10	C9	C8	H91	234.8	120.0
C10	C9	C8	H92	125.3	240.0
C8	C9	C10	C11	247.0	90.0
C8	C9	C10	C21	70.3	270.0
H91	C9	C8	H92	250.5	119.9
C8	C9	C10	H91	125.2	240.0
C8	C9	C10	H92	234.8	120.0
H91	C9	C10	H92	109.6	240.1
C11	C10	C9	C21	176.7	180.0
C9	C10	C11	C12	181.3	180.0
C9	C10	C11	H11	1.3	0.0
C9	C10	C21	C18	178.3	180.0
C9	C10	C21	H21	358.3	359.9
C8	C9	H91	C10	229.2	120.0
C8	C9	H91	H92	114.6	240.0
C10	C9	H91	H92	245.3	120.0
H91	C9	C10	C11	121.8	210.0
H91	C9	C10	C21	305.1	30.0
C8	C9	H92	C10	130.8	240.0
C8	C9	H92	H91	245.4	120.0
C10	C9	H92	H91	114.7	240.0
H92	C9	C10	C11	12.2	329.9
H92	C9	C10	C21	195.5	150.0
C11	C10	C9	H91	121.8	210.0
C11	C10	C9	H92	12.2	329.9
C9	C10	C11	C21	183.3	180.0
C11	C10	C21	C18	1.7	0.0
C11	C10	C21	H21	181.7	179.9
C12	C11	C10	H11	180.0	180.0
C10	C11	C12	O13	182.3	180.0
C10	C11	C12	C15	0.6	0.3
C21	C10	C9	H91	305.1	30.0
C21	C10	C9	H92	195.5	150.0
C9	C10	C21	C11	176.6	180.0
C21	C10	C11	C12	358.0	360.0
C21	C10	C11	H11	178.1	180.0
C15	C18	C21	C10	359.8	359.8
O19	C18	C21	C10	179.0	180.0
C18	C21	C10	H21	180.0	180.1
C12	C11	C10	C21	358.0	360.0
C10	C11	C12	H11	180.0	180.0
O13	C12	C11	C15	181.7	179.8
C11	C12	O13	C14	342.0	360.0
C11	C12	C15	O16	179.6	179.9
C11	C12	C15	C18	0.9	359.5
H11	C11	C10	C21	178.1	180.0
C10	C11	H11	C12	180.0	180.0
H11	C11	C12	O13	2.3	360.0
H11	C11	C12	C15	180.6	180.2
O13	C12	C11	H11	2.3	360.0
C11	C12	O13	C15	178.3	180.2
O13	C12	C15	O16	357.9	0.2
O13	C12	C15	C18	179.3	179.8
C12	O13	C14	H141	179.9	180.0
C12	O13	C14	H142	305.3	300.0
C12	O13	C14	H143	54.8	60.1
C15	C12	C11	H11	180.6	180.2
C11	C12	C15	O13	181.7	179.8
C15	C12	O13	C14	163.8	179.7
O16	C15	C12	C18	178.6	180.4
C12	C15	O16	C17	135.4	269.6
C12	C15	C18	O19	179.6	180.3
C12	C15	C18	C21	358.9	0.5
C14	O13	C12	C15	163.8	179.7
H141	C14	O13	H142	234.6	240.0
H141	C14	O13	H143	125.2	119.9
H142	C14	O13	H143	250.6	240.0
O13	C14	H141	H142	125.3	120.1
O13	C14	H141	H143	234.8	240.1
H142	C14	H141	H143	109.5	120.0
O13	C14	H142	H141	230.0	240.0
O13	C14	H142	H143	115.0	120.0
H141	C14	H142	H143	245.0	240.0
O13	C14	H143	H141	129.9	119.9
O13	C14	H143	H142	245.0	240.0
H141	C14	H143	H142	115.1	120.0
C12	C15	O16	C18	181.3	179.6
O16	C15	C18	O19	0.9	359.9
O16	C15	C18	C21	180.2	180.0
C15	O16	C17	H171	180.0	180.0
C15	O16	C17	H172	305.3	300.0
C15	O16	C17	H173	54.7	60.0
C10	C21	C18	C15	359.8	359.8
C12	C15	C18	O16	178.7	180.4
C18	C15	O16	C17	314.1	90.0
O19	C18	C15	C21	180.7	179.8
C15	C18	O19	C20	195.0	180.2
C15	C18	C21	H21	179.8	179.8
C17	O16	C15	C18	314.1	90.0
H171	C17	O16	H172	234.7	240.1
H171	C17	O16	H173	125.3	120.0
H172	C17	O16	H173	250.6	240.0
O16	C17	H171	H172	125.3	120.0
O16	C17	H171	H173	234.7	239.9
H172	C17	H171	H173	109.4	119.9
O16	C17	H172	H171	238.0	240.0
O16	C17	H172	H173	119.0	120.1
H171	C17	H172	H173	241.0	240.1
O16	C17	H173	H171	122.0	120.1
O16	C17	H173	H172	241.0	240.0
H171	C17	H173	H172	119.0	119.9
C10	C21	C18	O19	179.0	180.0
C15	C18	O19	C21	179.2	180.2
O19	C18	C21	H21	359.0	0.0
C18	O19	C20	H201	180.0	179.9
C18	O19	C20	H202	305.2	299.9
C18	O19	C20	H203	54.7	60.0
C10	C21	C18	H21	180.0	179.9
C15	C18	C21	O19	180.8	179.8
C21	C18	O19	C20	15.8	0.1
C20	O19	C18	C21	15.8	0.1
H201	C20	O19	H202	234.8	240.0
H201	C20	O19	H203	125.3	120.0
H202	C20	O19	H203	250.5	240.0
O19	C20	H201	H202	125.3	120.0
O19	C20	H201	H203	234.7	240.0
H202	C20	H201	H203	109.4	120.0
O19	C20	H202	H201	235.7	240.0
O19	C20	H202	H203	117.9	120.0
H201	C20	H202	H203	242.2	240.1
O19	C20	H203	H201	124.4	120.0
O19	C20	H203	H202	242.1	240.0
H201	C20	H203	H202	117.8	119.9
C10	C21	H21	C18	180.0	180.1