PDB Chemical Component TOL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TOL

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	F1	1.360	1.398
C1	F2	1.357	1.399
C1	F3	1.359	1.399
C1	C2	1.544	1.507
C2	C3	1.420	1.365
C2	C12	1.419	1.404
C3	O1	1.320	1.360
C3	C5	1.413	1.397
O1	C4	1.418	1.429
C4	H41	1.115	1.090
C4	H42	1.115	1.089
C4	H43	1.116	1.090
C5	C6	1.398	1.362
C5	H5	1.103	1.080
C6	C7	1.409	1.400
C6	H6	1.102	1.079
C7	C8	1.415	1.461
C7	C12	1.408	1.416
C8	C9	1.405	1.389
C8	C13	1.510	1.472
C9	C10	1.397	1.387
C9	H9	1.102	1.080
C10	C11	1.400	1.362
C10	H10	1.104	1.079
C11	C12	1.407	1.405
C11	H11	1.104	1.080
C13	S1	1.713	1.712
C13	N1	1.334	1.346
N1	C14	1.458	1.465
N1	C15	1.460	1.466
C14	H141	1.115	1.090
C14	H142	1.115	1.089
C14	H143	1.116	1.090
C15	C16	1.539	1.506
C15	H151	1.115	1.090
C15	H152	1.114	1.089
C16	O2	1.203	1.208
C16	O3	1.337	1.342
O3	HO3	0.950	0.966

Bond Angles for TOL

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
F1	C1	F2	108.0	109.4
F1	C1	F3	107.3	109.5
F1	C1	C2	110.8	109.5
F2	C1	F3	106.9	109.4
F2	C1	C2	111.6	109.5
F3	C1	C2	112.1	109.5
C1	C2	C3	123.8	120.2
C1	C2	C12	116.5	120.1
C3	C2	C12	119.7	119.6
C2	C3	O1	119.6	119.5
C2	C3	C5	119.3	120.9
C2	C12	C7	120.0	119.3
C2	C12	C11	121.0	121.3
O1	C3	C5	121.0	119.6
C3	O1	C4	113.0	106.8
C3	C5	C6	120.8	120.9
C3	C5	H5	120.1	119.6
O1	C4	H41	113.0	109.5
O1	C4	H42	110.9	109.5
O1	C4	H43	110.9	109.5
H41	C4	H42	111.0	109.5
H41	C4	H43	110.9	109.5
H42	C4	H43	99.4	109.4
C6	C5	H5	119.1	119.6
C5	C6	C7	120.1	119.7
C5	C6	H6	119.6	120.2
C7	C6	H6	120.4	120.2
C6	C7	C8	119.4	121.4
C6	C7	C12	120.1	119.7
C8	C7	C12	120.5	118.9
C7	C8	C9	119.4	118.7
C7	C8	C13	123.7	120.7
C7	C12	C11	119.0	119.4
C9	C8	C13	116.9	120.6
C8	C9	C10	120.4	120.6
C8	C9	H9	120.2	119.8
C8	C13	S1	119.4	120.0
C8	C13	N1	119.6	120.1
C10	C9	H9	119.5	119.7
C9	C10	C11	120.0	121.8
C9	C10	H10	119.9	119.1
C11	C10	H10	120.1	119.1
C10	C11	C12	120.8	120.7
C10	C11	H11	119.4	119.6
C12	C11	H11	119.8	119.7
S1	C13	N1	120.9	119.9
C13	N1	C14	119.8	120.0
C13	N1	C15	121.7	120.0
C14	N1	C15	118.5	120.0
N1	C14	H141	119.8	109.5
N1	C14	H142	108.5	109.5
N1	C14	H143	108.5	109.5
N1	C15	C16	111.5	109.5
N1	C15	H151	111.4	109.4
N1	C15	H152	111.4	109.5
H141	C14	H142	108.5	109.4
H141	C14	H143	108.4	109.5
H142	C14	H143	101.4	109.4
C16	C15	H151	111.5	109.5
C16	C15	H152	111.5	109.5
C15	C16	O2	122.2	120.0
C15	C16	O3	115.4	120.1
H151	C15	H152	99.0	109.5
O2	C16	O3	122.4	120.0
C16	O3	HO3	115.5	120.1

Torsion Angles for TOL

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
F2	C1	F1	F3	245.1	119.9
F2	C1	F1	C2	122.5	240.0
F3	C1	F1	C2	237.4	120.1
F1	C1	C2	C3	226.3	244.7
F1	C1	C2	C12	46.6	65.0
F1	C1	F2	F3	115.2	240.0
F1	C1	F2	C2	238.0	120.1
F3	C1	F2	C2	122.8	240.0
F2	C1	C2	C3	105.9	4.7
F2	C1	C2	C12	286.2	185.0
F1	C1	F3	F2	244.3	120.0
F1	C1	F3	C2	121.8	239.9
F2	C1	F3	C2	237.5	120.0
F3	C1	C2	C3	346.1	124.6
F3	C1	C2	C12	166.4	304.9
F1	C1	C2	F2	120.4	240.0
F1	C1	C2	F3	240.2	120.1
F2	C1	C2	F3	119.8	240.1
C3	C2	C1	C12	179.8	179.7
C1	C2	C3	O1	359.9	0.0
C1	C2	C3	C5	180.2	179.8
C1	C2	C12	C7	179.9	180.2
C1	C2	C12	C11	359.8	0.0
C1	C2	C3	C12	180.2	180.3
C3	C2	C12	C7	0.1	0.5
C3	C2	C12	C11	180.1	180.3
O1	C3	C2	C5	179.7	180.2
C2	C3	O1	C4	202.9	179.7
C2	C3	C5	C6	359.9	0.3
C2	C3	C5	H5	179.9	180.2
C1	C2	C12	C3	179.8	179.7
C12	C2	C3	O1	179.7	179.7
C12	C2	C3	C5	359.9	359.5
C6	C7	C12	C2	360.0	359.8
C8	C7	C12	C2	179.9	179.7
C7	C12	C2	C11	180.1	180.2
C10	C11	C12	C2	180.1	180.3
C2	C12	C11	H11	0.1	0.2
O1	C3	C2	C12	179.7	179.7
C2	C3	O1	C5	180.3	179.8
O1	C3	C5	C6	180.2	180.1
O1	C3	C5	H5	0.2	0.0
C3	O1	C4	H41	179.9	180.0
C3	O1	C4	H42	305.3	300.1
C3	O1	C4	H43	54.8	60.0
C5	C3	C2	C12	359.9	359.5
C2	C3	C5	O1	179.7	180.2
C5	C3	O1	C4	22.6	359.9
C6	C5	C3	H5	180.0	180.1
C3	C5	C6	C7	0.2	360.0
C3	C5	C6	H6	180.1	180.0
C4	O1	C3	C5	22.6	359.9
H41	C4	O1	H42	234.7	239.9
H41	C4	O1	H43	125.2	120.0
H42	C4	O1	H43	250.5	240.1
O1	C4	H41	H42	125.3	120.1
O1	C4	H41	H43	234.8	240.0
H42	C4	H41	H43	109.5	119.9
O1	C4	H42	H41	233.5	239.9
O1	C4	H42	H43	116.8	120.0
H41	C4	H42	H43	243.2	240.0
O1	C4	H43	H41	126.4	120.0
O1	C4	H43	H42	243.2	240.0
H41	C4	H43	H42	116.8	120.0
C3	C5	C6	H5	180.0	179.9
C7	C6	C5	H6	180.0	180.0
C5	C6	C7	C8	180.0	180.0
C5	C6	C7	C12	359.9	0.0
C3	C5	H5	C6	180.0	180.1
H5	C5	C6	C7	180.2	180.0
H5	C5	C6	H6	0.1	0.0
C2	C12	C7	C6	360.0	359.8
C7	C6	C5	H5	180.2	180.0
C5	C6	C7	H6	180.0	180.0
C8	C7	C6	C12	180.1	180.0
C6	C7	C8	C9	179.9	180.0
C6	C7	C8	C13	360.0	359.9
C6	C7	C12	C11	180.0	179.9
H6	C6	C5	H5	0.1	0.0
C5	C6	H6	C7	180.0	180.0
H6	C6	C7	C8	0.0	0.0
H6	C6	C7	C12	179.9	180.0
C2	C12	C7	C8	179.9	179.7
C8	C7	C6	H6	0.0	0.0
C6	C7	C8	C12	179.9	180.0
C8	C7	C12	C11	359.9	359.9
C9	C8	C7	C13	180.0	180.1
C7	C8	C9	C10	0.1	360.0
C7	C8	C9	H9	180.1	180.0
C7	C8	C13	S1	98.2	85.2
C7	C8	C13	N1	277.5	265.2
C2	C12	C7	C11	179.9	179.8
C12	C7	C6	H6	179.9	180.0
C6	C7	C12	C8	180.1	180.0
C12	C7	C8	C9	0.0	0.1
C12	C7	C8	C13	180.0	180.0
C10	C11	C12	C7	0.0	0.1
C7	C12	C11	H11	180.0	180.0
C9	C8	C7	C12	0.0	0.1
C7	C8	C9	C13	180.0	179.9
C9	C8	C13	S1	278.2	265.1
C9	C8	C13	N1	97.5	85.1
C10	C9	C8	H9	180.0	180.0
C8	C9	C10	C11	359.9	0.1
C8	C9	C10	H10	179.9	180.0
C13	C8	C7	C12	180.0	180.0
C7	C8	C13	C9	180.0	180.1
C13	C8	C9	C10	180.1	180.1
C13	C8	C9	H9	0.1	0.1
S1	C13	C8	N1	180.7	179.9
C8	C13	N1	C14	355.8	5.3
C8	C13	N1	C15	176.7	185.2
C10	C9	C8	C13	180.1	180.1
C8	C9	C10	H9	180.0	180.0
C11	C10	C9	H10	180.0	180.0
C9	C10	C11	C12	0.1	359.9
C9	C10	C11	H11	180.1	180.0
H9	C9	C8	C13	0.1	0.1
C8	C9	H9	C10	180.0	180.0
H9	C9	C10	C11	179.9	180.0
H9	C9	C10	H10	359.9	360.0
C2	C12	C11	C10	180.1	180.3
C7	C12	C11	C10	0.0	0.1
C11	C10	C9	H9	179.9	180.0
C9	C10	C11	H10	180.0	180.0
C12	C11	C10	H11	180.0	179.9
H10	C10	C9	H9	359.9	360.0
C9	C10	H10	C11	180.0	180.0
H10	C10	C11	C12	180.1	179.9
H10	C10	C11	H11	0.1	0.0
C2	C12	C11	C7	180.1	180.2
C12	C11	C10	H10	180.1	179.9
C10	C11	C12	H11	180.0	180.1
H11	C11	C10	H10	0.1	0.0
C10	C11	H11	C12	180.0	179.9
C8	C13	S1	N1	179.3	180.1
S1	C13	N1	C14	175.1	185.3
S1	C13	N1	C15	356.0	5.3
C8	C13	N1	S1	180.7	179.9
C14	N1	C13	C15	179.1	180.0
C13	N1	C14	H141	180.0	354.9
C13	N1	C14	H142	305.3	114.9
C13	N1	C14	H143	54.7	234.9
C13	N1	C15	C16	286.6	90.0
C13	N1	C15	H151	51.9	210.0
C13	N1	C15	H152	161.4	330.0
C13	N1	C14	C15	180.9	180.0
C14	N1	C15	C16	107.5	270.0
C14	N1	C15	H151	232.8	30.0
C14	N1	C15	H152	342.3	149.9
H141	C14	N1	H142	234.7	240.0
H141	C14	N1	H143	125.2	120.0
H142	C14	N1	H143	250.6	240.0
C13	N1	C15	C14	179.1	180.0
C15	N1	C14	H141	359.1	175.0
C15	N1	C14	H142	124.4	295.0
C15	N1	C14	H143	233.9	55.0
C16	C15	N1	H151	234.7	240.0
C16	C15	N1	H152	125.3	120.0
N1	C15	C16	O2	168.8	0.1
N1	C15	C16	O3	348.5	180.0
H151	C15	N1	H152	250.5	240.0
H141	C14	N1	C15	359.1	175.0
N1	C14	H141	H142	125.3	120.0
N1	C14	H141	H143	234.7	240.0
H142	C14	H141	H143	109.4	119.9
H142	C14	N1	C15	124.4	295.0
N1	C14	H142	H141	228.3	240.0
N1	C14	H142	H143	114.2	120.0
H141	C14	H142	H143	245.9	240.0
H143	C14	N1	C15	233.9	55.0
N1	C14	H143	H141	131.7	120.0
N1	C14	H143	H142	245.8	239.9
H141	C14	H143	H142	114.1	119.9
N1	C15	C16	H151	125.2	120.0
N1	C15	C16	H152	234.8	240.0
H151	C15	C16	H152	109.5	120.0
O2	C16	C15	O3	180.3	180.1
C15	C16	O3	HO3	180.0	180.0
N1	C15	H151	C16	234.7	240.0
N1	C15	H151	H152	117.3	120.0
C16	C15	H151	H152	242.6	240.0
H151	C15	C16	O2	43.6	240.1
H151	C15	C16	O3	223.3	60.0
N1	C15	H152	C16	125.3	120.0
N1	C15	H152	H151	242.7	240.0
C16	C15	H152	H151	117.4	120.0
H152	C15	C16	O2	294.0	120.1
H152	C15	C16	O3	113.7	300.0
O2	C16	C15	H151	43.6	240.1
O2	C16	C15	H152	294.0	120.1
C15	C16	O2	O3	179.7	179.9
O2	C16	O3	HO3	359.7	359.9
O3	C16	C15	H151	223.3	60.0
O3	C16	C15	H152	113.7	300.0
C15	C16	O3	O2	180.3	180.1