PDB Chemical Component TOA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TOA

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.527	1.531
C1	O1	1.382	1.428
C1	O5	1.433	1.427
C1	H1	1.088	1.090
C2	C3	1.523	1.533
C2	O2	1.420	1.429
C2	H2	1.100	1.090
C3	C4	1.524	1.533
C3	N3	1.479	1.469
C3	H3	1.095	1.090
C4	C5	1.526	1.531
C4	O4	1.421	1.429
C4	H4	1.091	1.090
C5	C6	1.516	1.531
C5	O5	1.444	1.427
C5	H5	1.099	1.089
C6	O6	1.421	1.429
C6	H61	1.082	1.090
C6	H62	1.099	1.090
O1	HO1	0.949	0.968
O2	HO2	1.101	0.967
N3	HN31	1.037	1.009
N3	HN32	1.039	1.010
N3	HN33	1.039	1.008
O4	HO4	1.099	0.967
O6	HO6	1.101	0.967

Bond Angles for TOA

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	110.2	109.4
C2	C1	O5	110.5	109.8
C2	C1	H1	107.4	109.4
C1	C2	C3	109.7	109.0
C1	C2	O2	109.7	109.6
C1	C2	H2	108.2	109.6
O1	C1	O5	108.4	109.4
O1	C1	H1	106.3	109.5
C1	O1	HO1	110.2	106.8
O5	C1	H1	114.0	109.4
C1	O5	C5	112.5	107.6
C3	C2	O2	109.7	109.6
C3	C2	H2	109.4	109.5
C2	C3	C4	109.4	108.8
C2	C3	N3	111.2	109.6
C2	C3	H3	106.8	109.6
O2	C2	H2	110.1	109.5
C2	O2	HO2	109.5	106.8
C4	C3	N3	111.9	109.6
C4	C3	H3	108.5	109.6
C3	C4	C5	109.9	109.0
C3	C4	O4	109.8	109.8
C3	C4	H4	110.8	109.4
N3	C3	H3	108.9	109.6
C3	N3	HN31	109.7	109.5
C3	N3	HN32	110.7	109.4
C3	N3	HN33	110.4	109.5
C5	C4	O4	110.1	109.6
C5	C4	H4	104.9	109.6
C4	C5	C6	112.4	109.3
C4	C5	O5	110.0	109.9
C4	C5	H5	109.7	109.3
O4	C4	H4	111.3	109.5
C4	O4	HO4	111.1	106.8
C6	C5	O5	107.3	109.4
C6	C5	H5	109.1	109.4
C5	C6	O6	111.4	109.5
C5	C6	H61	107.0	109.4
C5	C6	H62	110.1	109.5
O5	C5	H5	108.3	109.5
O6	C6	H61	109.6	109.5
O6	C6	H62	109.4	109.5
C6	O6	HO6	109.2	106.8
H61	C6	H62	109.2	109.5
HN31	N3	HN32	107.7	109.5
HN31	N3	HN33	109.0	109.5
HN32	N3	HN33	109.4	109.5

Torsion Angles for TOA

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	240.3	239.9
O1	C1	C2	H1	115.4	119.9
C2	C1	O1	HO1	180.0	180.0
O5	C1	C2	H1	235.1	240.0
C2	C1	O5	C5	299.5	292.4
C3	C2	C1	O2	239.4	240.1
C3	C2	C1	H2	119.3	119.9
C1	C2	C3	C4	304.4	306.4
C1	C2	C3	N3	180.3	186.5
C1	C2	C3	H3	61.7	66.2
O2	C2	C1	H2	239.8	239.8
C1	C2	O2	HO2	57.3	60.4
C2	C1	O1	O5	121.0	120.3
C2	C1	O1	H1	243.9	240.2
O1	C1	C2	C3	297.7	301.2
O1	C1	C2	O2	58.3	61.1
O1	C1	C2	H2	178.4	181.4
O5	C1	O1	H1	122.9	119.9
O1	C1	O5	C5	60.3	52.4
C2	C1	O5	O1	239.2	239.9
C2	C1	O5	H1	121.1	120.0
O5	C1	C2	C3	57.5	61.3
O5	C1	C2	O2	178.0	181.2
O5	C1	C2	H2	298.2	301.4
O1	C1	O5	H1	241.9	240.1
O5	C1	O1	HO1	59.0	59.7
C4	C5	O5	C1	60.3	67.6
C6	C5	O5	C1	182.9	187.7
C1	O5	C5	H5	300.4	307.5
C2	C1	H1	O1	117.9	119.9
C2	C1	H1	O5	237.3	239.7
H1	C1	C2	C3	182.3	181.3
H1	C1	C2	O2	302.9	301.2
H1	C1	C2	H2	63.1	61.4
O1	C1	H1	O5	119.4	119.9
H1	C1	O1	HO1	296.1	299.8
H1	C1	O5	C5	178.5	172.3
C3	C2	C1	O1	297.7	301.2
C3	C2	C1	O5	57.5	61.3
C3	C2	C1	H1	182.3	181.3
C1	C2	C3	O2	120.6	119.9
C1	C2	C3	H2	241.5	240.1
O2	C2	C3	H2	120.9	120.2
C3	C2	O2	HO2	177.9	180.0
C4	C3	C2	N3	124.1	119.9
C4	C3	C2	H3	242.8	240.2
C2	C3	C4	C5	55.8	53.5
C2	C3	C4	O4	177.0	173.5
C2	C3	C4	H4	300.3	293.7
N3	C3	C2	H3	118.6	120.3
C2	C3	N3	HN31	253.3	59.7
C2	C3	N3	HN32	12.0	299.7
C2	C3	N3	HN33	133.2	179.7
O2	C2	C1	O1	58.3	61.1
O2	C2	C1	O5	178.0	181.2
O2	C2	C1	H1	302.9	301.2
C1	C2	O2	C3	239.4	240.4
C1	C2	O2	H2	119.0	120.2
C3	C2	O2	H2	239.5	239.8
O2	C2	C3	C4	183.8	186.4
O2	C2	C3	N3	59.7	66.6
O2	C2	C3	H3	301.1	306.2
H2	C2	C1	O1	178.4	181.4
H2	C2	C1	O5	298.2	301.4
H2	C2	C1	H1	63.1	61.4
C1	C2	H2	C3	119.4	119.5
C1	C2	H2	O2	240.1	239.7
C3	C2	H2	O2	120.6	120.2
H2	C2	C3	C4	62.9	66.2
H2	C2	C3	N3	298.8	306.4
H2	C2	C3	H3	180.2	186.1
H2	C2	O2	HO2	298.3	300.2
C4	C3	C2	O2	183.8	186.4
C4	C3	C2	H2	62.9	66.2
C2	C3	C4	N3	236.3	240.1
C2	C3	C4	H3	116.2	119.8
N3	C3	C4	H3	239.8	239.7
C4	C3	N3	HN31	130.6	300.3
C4	C3	N3	HN32	249.3	180.3
C4	C3	N3	HN33	10.5	60.3
C5	C4	C3	O4	238.8	240.0
C5	C4	C3	H4	115.5	119.7
C3	C4	C5	C6	183.2	178.9
C3	C4	C5	O5	302.6	298.9
C3	C4	C5	H5	61.7	59.1
O4	C4	C3	H4	236.7	239.8
C3	C4	O4	HO4	176.6	180.3
N3	C3	C2	O2	59.7	66.6
N3	C3	C2	H2	298.8	306.4
C2	C3	N3	C4	122.7	119.4
C2	C3	N3	H3	242.6	239.7
C4	C3	N3	H3	120.0	120.3
N3	C3	C4	C5	179.5	173.3
N3	C3	C4	O4	300.7	293.4
N3	C3	C4	H4	64.0	53.6
HN31	N3	C3	HN32	241.3	120.0
HN31	N3	C3	HN33	120.1	239.9
HN32	N3	C3	HN33	238.8	120.0
H3	C3	C2	O2	301.1	306.2
H3	C3	C2	H2	180.2	186.1
C2	C3	H3	C4	242.2	240.7
C2	C3	H3	N3	120.1	120.3
C4	C3	H3	N3	237.9	239.7
H3	C3	C4	C5	299.7	293.7
H3	C3	C4	O4	60.9	53.7
H3	C3	C4	H4	184.2	173.9
H3	C3	N3	HN31	10.7	180.0
H3	C3	N3	HN32	129.4	60.0
H3	C3	N3	HN33	250.5	300.0
C1	O5	C5	C4	60.3	67.6
C5	C4	C3	N3	179.5	173.3
C5	C4	C3	H3	299.7	293.7
C3	C4	C5	O4	121.0	120.2
C3	C4	C5	H4	240.8	240.4
O4	C4	C5	H4	119.8	120.2
C5	C4	O4	HO4	297.6	300.0
C6	C5	C4	O5	240.5	239.9
C6	C5	C4	H5	121.5	119.7
C4	C5	C6	O6	58.8	185.4
C4	C5	C6	H61	178.6	305.5
C4	C5	C6	H62	297.1	65.4
O5	C5	C4	H5	241.0	239.8
O4	C4	C3	N3	300.7	293.4
O4	C4	C3	H3	60.9	53.7
C3	C4	O4	C5	238.9	240.3
C3	C4	O4	H4	123.0	120.1
C5	C4	O4	H4	244.1	239.8
O4	C4	C5	C6	62.2	58.7
O4	C4	C5	O5	181.6	178.8
O4	C4	C5	H5	300.6	298.9
H4	C4	C3	N3	64.0	53.6
H4	C4	C3	H3	184.2	173.9
C3	C4	H4	C5	118.5	119.4
C3	C4	H4	O4	237.6	239.6
C5	C4	H4	O4	119.0	120.2
H4	C4	C5	C6	302.3	298.5
H4	C4	C5	O5	61.8	58.6
H4	C4	C5	H5	180.8	178.7
H4	C4	O4	HO4	53.5	60.2
C1	O5	C5	C6	182.9	187.7
C6	C5	C4	O4	62.2	58.7
C6	C5	C4	H4	302.3	298.5
C4	C5	C6	O5	121.1	120.4
C4	C5	C6	H5	238.1	240.3
O5	C5	C6	H5	117.0	119.9
O6	C6	C5	H61	240.2	240.0
O6	C6	C5	H62	121.6	120.0
C5	C6	O6	HO6	178.9	180.0
H61	C6	C5	H62	241.5	240.0
C5	O5	C1	H1	178.5	172.3
O5	C5	C4	O4	181.6	178.8
O5	C5	C4	H4	61.8	58.6
C4	C5	O5	C6	237.5	239.9
C4	C5	O5	H5	119.9	120.1
C6	C5	O5	H5	242.4	240.2
O5	C5	C6	O6	297.7	65.0
O5	C5	C6	H61	57.5	185.0
O5	C5	C6	H62	176.1	305.0
H5	C5	C4	O4	300.6	298.9
H5	C5	C4	H4	180.8	178.7
C4	C5	H5	C6	123.5	119.7
C4	C5	H5	O5	239.9	239.5
C6	C5	H5	O5	116.4	119.8
H5	C5	C6	O6	180.7	305.1
H5	C5	C6	H61	300.5	65.1
H5	C5	C6	H62	59.0	185.1
O6	C6	C5	O5	297.7	65.0
O6	C6	C5	H5	180.7	305.1
C5	C6	O6	H61	118.3	120.0
C5	C6	O6	H62	238.0	240.0
H61	C6	O6	H62	119.7	120.0
H61	C6	C5	O5	57.5	185.0
H61	C6	C5	H5	300.5	65.1
C5	C6	H61	O6	239.0	240.0
C5	C6	H61	H62	119.2	120.0
O6	C6	H61	H62	240.1	240.0
H61	C6	O6	HO6	60.6	60.0
H62	C6	C5	O5	176.1	305.0
H62	C6	C5	H5	59.0	185.1
C5	C6	H62	O6	122.8	120.0
C5	C6	H62	H61	242.8	240.0
O6	C6	H62	H61	120.0	120.0
H62	C6	O6	HO6	300.9	300.0
HO1	O1	C1	O5	59.0	59.7
HO1	O1	C1	H1	296.1	299.8
HO2	O2	C2	H2	298.3	300.2
HN31	N3	C3	H3	10.7	180.0
C3	N3	HN31	HN32	120.5	240.1
C3	N3	HN31	HN33	239.1	120.1
HN32	N3	HN31	HN33	118.6	240.0
HN32	N3	C3	H3	129.4	60.0
C3	N3	HN32	HN31	240.1	120.0
C3	N3	HN32	HN33	121.8	240.0
HN31	N3	HN32	HN33	241.7	120.0
HN33	N3	C3	H3	250.5	300.0
C3	N3	HN33	HN31	120.5	240.0
C3	N3	HN33	HN32	238.0	120.0
HN31	N3	HN33	HN32	117.5	240.0
HO4	O4	C4	H4	53.5	60.2
HO6	O6	C6	H61	60.6	60.0
HO6	O6	C6	H62	300.9	300.0