PDB Chemical Component TNV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TNV

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PA O1A 1.545 1.479
PA O2A 1.549 1.609
PA O3A 1.538 1.609
PA C9' 1.780 1.823
O2A H2A 0.950 0.967
O3A PB 1.593 1.610
PB O1B 1.566 1.479
PB O2B 1.540 1.609
PB O3B 1.583 1.610
O2B H2B 0.949 0.966
O3B PG 1.605 1.609
PG O1G 1.469 1.480
PG O2G 1.493 1.610
PG O3G 1.568 1.609
O2G H2G 0.949 0.966
O3G H3G 0.949 0.968
C9' O9' 1.366 1.430
C9' H9'1 1.115 1.089
C9' H9'2 1.116 1.090
O9' C7' 1.444 1.428
C8' C7' 1.549 1.530
C8' H8'1 1.115 1.090
C8' H8'2 1.115 1.090
C8' H8'3 1.114 1.090
C7' C6' 1.601 1.530
C7' H7' 1.115 1.090
C6' N9 1.444 1.464
C6' H6'1 1.115 1.090
C6' H6'2 1.115 1.090
N9 C4 1.379 1.372
N9 C8 1.387 1.364
C4 N3 1.362 1.330
C4 C5 1.416 1.405
N3 C2 1.361 1.317
C2 N1 1.377 1.320
C2 H2 1.103 1.080
N1 C6 1.374 1.328
C6 N6 1.330 1.383
C6 C5 1.453 1.405
N6 HN61 1.020 0.971
N6 HN62 1.020 0.970
C5 N7 1.401 1.355
N7 C8 1.332 1.301
C8 H8 1.103 1.080

Bond Angles for TNV

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1A PA O2A 110.1 109.5
O1A PA O3A 108.6 109.5
O1A PA C9' 108.3 109.5
O2A PA O3A 108.9 109.5
O2A PA C9' 108.1 109.5
PA O2A H2A 110.1 106.8
O3A PA C9' 112.8 109.4
PA O3A PB 120.1 106.8
PA C9' O9' 109.5 109.4
PA C9' H9'1 112.2 109.5
PA C9' H9'2 112.2 109.5
O3A PB O1B 109.3 109.4
O3A PB O2B 107.9 109.5
O3A PB O3B 110.9 109.5
O1B PB O2B 110.7 109.5
O1B PB O3B 108.5 109.5
O2B PB O3B 109.6 109.5
PB O2B H2B 107.9 106.8
PB O3B PG 122.0 106.8
O3B PG O1G 109.7 109.4
O3B PG O2G 109.1 109.5
O3B PG O3G 110.7 109.5
O1G PG O2G 108.6 109.4
O1G PG O3G 108.8 109.5
O2G PG O3G 109.8 109.5
PG O2G H2G 109.1 106.8
PG O3G H3G 110.7 106.8
O9' C9' H9'1 112.2 109.5
O9' C9' H9'2 112.2 109.4
C9' O9' C7' 116.6 106.8
H9'1 C9' H9'2 98.2 109.5
O9' C7' C8' 107.8 109.5
O9' C7' C6' 114.4 109.4
O9' C7' H7' 108.5 109.5
C7' C8' H8'1 107.7 109.4
C7' C8' H8'2 112.8 109.4
C7' C8' H8'3 112.8 109.4
C8' C7' C6' 112.9 109.5
C8' C7' H7' 110.3 109.5
H8'1 C8' H8'2 112.9 109.5
H8'1 C8' H8'3 112.9 109.5
H8'2 C8' H8'3 97.6 109.5
C6' C7' H7' 102.9 109.5
C7' C6' N9 113.7 109.5
C7' C6' H6'1 110.6 109.5
C7' C6' H6'2 110.7 109.5
N9 C6' H6'1 110.7 109.5
N9 C6' H6'2 110.7 109.5
C6' N9 C4 129.1 126.4
C6' N9 C8 124.8 126.3
H6'1 C6' H6'2 99.6 109.4
C4 N9 C8 106.1 107.4
N9 C4 N3 126.3 134.8
N9 C4 C5 105.9 106.1
N9 C8 N7 113.9 110.0
N9 C8 H8 124.8 125.0
N3 C4 C5 127.7 119.1
C4 N3 C2 111.0 120.6
C4 C5 C6 116.1 118.2
C4 C5 N7 110.2 107.1
N3 C2 N1 128.5 122.5
N3 C2 H2 115.0 118.7
N1 C2 H2 116.5 118.8
C2 N1 C6 119.1 121.2
N1 C6 N6 117.4 120.8
N1 C6 C5 117.6 118.5
N6 C6 C5 125.0 120.7
C6 N6 HN61 117.4 120.0
C6 N6 HN62 109.3 120.0
C6 C5 N7 133.7 134.7
HN61 N6 HN62 109.3 120.0
C5 N7 C8 103.9 109.4
N7 C8 H8 121.3 125.0

Torsion Angles for TNV

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2A PA O1A O3A 240.8 240.0
O2A PA O1A C9' 118.0 120.0
O1A PA O2A H2A 180.1 185.2
O3A PA O1A C9' 237.2 240.0
O1A PA O3A PB 48.1 300.0
O1A PA C9' O9' 242.4 65.7
O1A PA C9' H9'1 7.7 305.7
O1A PA C9' H9'2 117.2 185.6
O1A PA O2A O3A 119.0 120.0
O1A PA O2A C9' 241.9 240.0
O3A PA O2A C9' 122.9 120.0
O2A PA O3A PB 168.0 60.0
O2A PA C9' O9' 123.2 305.7
O2A PA C9' H9'1 248.4 185.7
O2A PA C9' H9'2 357.9 65.6
O1A PA O3A O2A 240.1 240.0
O1A PA O3A C9' 120.0 120.0
O2A PA O3A C9' 239.9 240.0
O3A PA O2A H2A 61.1 65.2
O3A PA C9' O9' 2.6 185.7
O3A PA C9' H9'1 127.9 65.7
O3A PA C9' H9'2 237.3 305.6
PA O3A PB O1B 121.9 60.0
PA O3A PB O2B 1.5 300.0
PA O3A PB O3B 241.4 180.0
O1A PA C9' O2A 119.3 120.0
O1A PA C9' O3A 239.8 240.0
O2A PA C9' O3A 120.5 120.0
C9' PA O2A H2A 298.2 305.2
C9' PA O3A PB 288.1 180.0
O9' C9' PA H9'1 234.7 120.0
O9' C9' PA H9'2 125.3 240.1
PA C9' O9' C7' 249.4 282.5
H9'1 C9' PA H9'2 250.6 120.1
H2A O2A PA O3A 61.1 65.2
H2A O2A PA C9' 298.2 305.2
PB O3A PA C9' 288.1 180.0
O1B PB O3A O2B 120.4 120.0
O1B PB O3A O3B 240.5 240.0
O2B PB O3A O3B 120.1 120.0
O3A PB O2B H2B 180.0 300.0
O3A PB O3B PG 61.4 180.0
O3A PB O1B O2B 241.3 240.0
O3A PB O1B O3B 121.1 120.0
O2B PB O1B O3B 239.7 240.0
O1B PB O2B H2B 60.5 180.0
O1B PB O3B PG 181.4 299.9
O3A PB O2B O1B 119.5 120.0
O3A PB O2B O3B 239.1 240.0
O1B PB O2B O3B 119.6 120.0
O2B PB O3B PG 302.4 60.0
O3A PB O3B O1B 240.0 240.0
O3A PB O3B O2B 119.0 120.0
O1B PB O3B O2B 239.0 240.0
O3B PB O2B H2B 300.9 60.0
PB O3B PG O1G 60.6 60.1
PB O3B PG O2G 179.5 180.0
PB O3B PG O3G 300.5 300.0
H2B O2B PB O3B 300.9 60.0
O1G PG O3B O2G 241.1 240.1
O1G PG O3B O3G 120.1 120.0
O2G PG O3B O3G 239.0 240.0
O3B PG O2G H2G 180.0 180.0
O3B PG O3G H3G 179.9 300.0
O3B PG O1G O2G 119.2 120.0
O3B PG O1G O3G 238.7 240.0
O2G PG O1G O3G 119.5 120.0
O1G PG O2G H2G 299.6 300.0
O1G PG O3G H3G 59.3 180.0
O3B PG O2G O1G 240.5 240.1
O3B PG O2G O3G 121.6 120.1
O1G PG O2G O3G 241.1 240.0
O2G PG O3G H3G 300.5 60.0
O3B PG O3G O1G 120.6 120.0
O3B PG O3G O2G 239.4 240.0
O1G PG O3G O2G 118.8 120.0
O3G PG O2G H2G 58.5 60.0
H2G O2G PG O3G 58.5 60.0
PA C9' O9' H9'1 125.3 240.0
PA C9' O9' H9'2 234.7 120.0
H9'1 C9' O9' H9'2 109.4 240.0
C9' O9' C7' C8' 102.8 272.7
C9' O9' C7' C6' 336.3 152.7
C9' O9' C7' H7' 222.1 32.7
PA C9' H9'1 O9' 236.2 120.0
PA C9' H9'1 H9'2 118.1 240.0
O9' C9' H9'1 H9'2 241.9 120.0
H9'1 C9' O9' C7' 124.1 42.5
PA C9' H9'2 O9' 123.8 240.1
PA C9' H9'2 H9'1 241.9 120.0
O9' C9' H9'2 H9'1 118.1 240.0
H9'2 C9' O9' C7' 14.7 162.6
C7' O9' C9' H9'1 124.1 42.5
C7' O9' C9' H9'2 14.7 162.6
O9' C7' C8' H8'1 180.0 304.2
O9' C7' C8' H8'2 305.3 64.3
O9' C7' C8' H8'3 54.8 184.2
C8' C7' O9' C6' 126.4 120.0
C8' C7' O9' H7' 240.6 240.0
C6' C7' O9' H7' 114.2 120.0
O9' C7' C6' N9 123.4 300.0
O9' C7' C6' H6'1 248.7 60.1
O9' C7' C6' H6'2 358.1 180.0
O9' C7' C8' C6' 232.7 240.0
O9' C7' C8' H7' 118.2 120.0
H8'1 C8' C7' H8'2 234.8 240.0
H8'1 C8' C7' H8'3 125.3 120.0
H8'2 C8' C7' H8'3 250.5 240.0
C6' C7' C8' H7' 245.6 240.0
C8' C7' C6' N9 359.7 180.0
C8' C7' C6' H6'1 125.0 300.0
C8' C7' C6' H6'2 234.4 60.0
C7' C8' H8'1 H8'2 125.2 119.9
C7' C8' H8'1 H8'3 234.8 240.0
H8'1 C8' C7' C6' 307.4 64.2
H8'1 C8' C7' H7' 61.8 184.2
H8'2 C8' H8'1 H8'3 109.6 120.1
C7' C8' H8'2 H8'1 237.6 240.0
C7' C8' H8'2 H8'3 118.7 119.9
H8'2 C8' C7' C6' 72.6 184.2
H8'2 C8' C7' H7' 187.0 304.2
H8'1 C8' H8'2 H8'3 241.1 239.9
C7' C8' H8'3 H8'1 122.4 120.0
C7' C8' H8'3 H8'2 241.2 240.1
H8'3 C8' C7' C6' 182.1 304.2
H8'3 C8' C7' H7' 296.5 64.2
H8'1 C8' H8'3 H8'2 118.8 120.1
O9' C7' C6' C8' 123.7 120.0
O9' C7' C6' H7' 242.5 240.0
C6' C7' C8' H8'1 307.4 64.2
C6' C7' C8' H8'2 72.6 184.2
C6' C7' C8' H8'3 182.1 304.2
C8' C7' C6' H7' 118.8 120.0
N9 C6' C7' H6'1 234.7 239.9
N9 C6' C7' H6'2 125.3 120.0
C7' C6' N9 C4 77.8 269.7
C7' C6' N9 C8 257.9 90.0
H6'1 C6' C7' H6'2 250.6 240.1
O9' C7' H7' C8' 242.2 240.0
O9' C7' H7' C6' 121.6 120.0
H7' C7' C8' H8'1 61.8 184.2
H7' C7' C8' H8'2 187.0 304.2
H7' C7' C8' H8'3 296.5 64.2
C8' C7' H7' C6' 239.4 240.0
H7' C7' C6' N9 240.9 60.0
H7' C7' C6' H6'1 6.2 180.1
H7' C7' C6' H6'2 115.6 300.0
N9 C6' C7' H7' 240.9 60.0
C7' C6' N9 H6'1 125.3 120.1
C7' C6' N9 H6'2 234.7 240.0
H6'1 C6' N9 H6'2 109.4 119.9
C4 N9 C6' C8 179.9 179.7
C6' N9 C4 N3 0.2 0.7
C6' N9 C4 C5 180.7 179.9
C6' N9 C8 N7 179.5 180.0
C6' N9 C8 H8 359.5 0.0
H6'1 C6' C7' H7' 6.2 180.1
C7' C6' H6'1 N9 233.0 239.9
C7' C6' H6'1 H6'2 116.5 120.0
N9 C6' H6'1 H6'2 243.5 240.0
H6'1 C6' N9 C4 312.5 149.7
H6'1 C6' N9 C8 132.6 330.0
H6'2 C6' C7' H7' 115.6 300.0
C7' C6' H6'2 N9 127.0 120.0
C7' C6' H6'2 H6'1 243.5 240.0
N9 C6' H6'2 H6'1 116.5 120.0
H6'2 C6' N9 C4 203.1 29.8
H6'2 C6' N9 C8 23.2 210.0
C4 N9 C6' H6'1 312.5 149.7
C4 N9 C6' H6'2 203.1 29.8
C6' N9 C4 C8 180.1 180.2
C4 N9 C8 N7 359.6 0.2
C4 N9 C8 H8 179.5 180.2
N3 C4 N9 C5 179.5 180.8
N9 C4 N3 C2 180.7 179.6
N9 C4 C5 C6 179.1 180.1
N9 C4 C5 N7 359.4 0.3
C8 N9 C6' H6'1 132.6 330.0
C8 N9 C6' H6'2 23.2 210.0
C6' N9 C8 C4 179.9 179.8
C8 N9 C4 N3 180.1 180.5
C8 N9 C4 C5 0.6 359.6
C5 N7 C8 N9 0.0 360.0
N7 C8 N9 H8 180.1 180.0
N3 C4 N9 C8 180.1 180.5
N9 C4 N3 C5 180.6 179.1
N3 C4 C5 C6 359.6 359.5
N3 C4 C5 N7 179.9 179.7
C4 N3 C2 N1 0.3 359.7
C4 N3 C2 H2 180.3 179.8
C5 C4 N9 C8 0.6 359.6
N9 C4 C5 N3 179.5 180.7
C5 C4 N3 C2 0.1 0.5
N1 C6 C5 C4 0.4 0.3
N6 C6 C5 C4 180.6 180.3
C6 C5 C4 N7 179.7 179.8
C4 C5 N7 C8 0.4 359.8
C2 N3 C4 C5 0.1 0.5
N1 C2 N3 H2 179.9 179.9
N3 C2 N1 C6 359.6 0.0
N3 C2 N1 H2 180.1 180.1
C2 N1 C6 N6 179.8 180.0
C2 N1 C6 C5 360.0 359.9
N3 C2 H2 N1 180.0 179.9
H2 C2 N1 C6 179.6 180.0
C4 C5 C6 N1 0.4 0.3
C6 N1 C2 H2 179.6 180.0
N6 C6 N1 C5 179.8 180.0
N1 C6 N6 HN61 179.9 360.0
N1 C6 N6 HN62 54.8 180.0
N1 C6 C5 N7 179.9 180.0
C4 C5 C6 N6 180.6 180.3
N1 C6 N6 C5 180.3 180.0
N6 C6 C5 N7 0.2 360.0
HN61 N6 C6 HN62 125.2 180.0
C4 C5 C6 N7 180.4 180.3
N1 C6 C5 N6 179.7 180.0
C5 C6 N6 HN61 359.7 180.0
C5 C6 N6 HN62 234.5 0.0
C6 C5 N7 C8 180.8 180.0
HN61 N6 C6 C5 359.7 180.0
C6 N6 HN61 HN62 234.8 180.0
HN62 N6 C6 C5 234.5 0.0
C6 N6 HN62 HN61 129.7 180.0
N9 C8 N7 C5 0.0 360.0
C4 C5 N7 C6 179.6 179.7
C5 N7 C8 H8 180.1 180.0
N9 C8 N7 H8 179.9 180.0
N9 C8 H8 N7 180.1 180.0