PDB Chemical Component TNM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TNM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C9' |
PA |
1.785 |
1.823 |
| O2A |
PA |
1.489 |
1.480 |
| PA |
O3A |
1.601 |
1.610 |
| PA |
O1A |
1.491 |
1.610 |
| O1A |
HO1A |
0.950 |
0.967 |
| O3A |
PB |
1.610 |
1.610 |
| PB |
O2B |
1.487 |
1.480 |
| PB |
O3B |
1.487 |
1.610 |
| PB |
O1B |
1.489 |
1.611 |
| O1B |
HO1B |
0.950 |
0.967 |
| O3B |
HO3B |
0.950 |
0.967 |
| O9' |
C9' |
1.373 |
1.430 |
| C9' |
H9' |
1.100 |
1.090 |
| C9' |
H9'A |
1.100 |
1.089 |
| O9' |
C7' |
1.444 |
1.429 |
| C8' |
C7' |
1.552 |
1.530 |
| C8' |
H8' |
1.100 |
1.090 |
| C8' |
H8'A |
1.100 |
1.090 |
| C8' |
H8'B |
1.100 |
1.090 |
| C6' |
C7' |
1.608 |
1.529 |
| C7' |
H7' |
1.100 |
1.090 |
| N9 |
C6' |
1.457 |
1.466 |
| C6' |
H6' |
1.099 |
1.090 |
| C6' |
H6'A |
1.100 |
1.090 |
| C4 |
N9 |
1.383 |
1.371 |
| C8 |
N9 |
1.387 |
1.363 |
| C5 |
C4 |
1.421 |
1.405 |
| C4 |
N3 |
1.388 |
1.329 |
| C2 |
N3 |
1.372 |
1.316 |
| N1 |
C2 |
1.389 |
1.321 |
| C2 |
H2 |
1.080 |
1.080 |
| C6 |
N1 |
1.392 |
1.329 |
| N6 |
C6 |
1.335 |
1.383 |
| C6 |
C5 |
1.468 |
1.406 |
| N6 |
HN6 |
1.000 |
0.970 |
| N6 |
HN6A |
1.000 |
0.970 |
| C5 |
N7 |
1.397 |
1.355 |
| N7 |
C8 |
1.326 |
1.302 |
| C8 |
H8 |
1.079 |
1.080 |
Bond Angles for TNM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2A |
PA |
O3A |
107.6 |
109.5 |
| O1A |
PA |
O3A |
108.5 |
109.5 |
| PA |
O3A |
PB |
122.8 |
134.0 |
| PA |
O1A |
HO1A |
109.5 |
114.0 |
| O3A |
PB |
O2B |
103.0 |
109.5 |
| O3A |
PB |
O3B |
101.8 |
109.5 |
| O3A |
PB |
O1B |
102.5 |
109.4 |
| O2B |
PB |
O3B |
115.5 |
109.5 |
| O1B |
PB |
O2B |
115.6 |
109.4 |
| O1B |
PB |
O3B |
115.4 |
109.5 |
| PB |
O3B |
HO3B |
109.5 |
114.0 |
| PB |
O1B |
HO1B |
109.5 |
114.0 |
| O9' |
C9' |
H9' |
109.3 |
109.4 |
| O9' |
C9' |
H9'A |
109.2 |
109.5 |
| H9' |
C9' |
H9'A |
109.8 |
109.5 |
| O9' |
C7' |
C8' |
111.8 |
109.5 |
| O9' |
C7' |
H7' |
114.0 |
109.5 |
| C7' |
C8' |
H8' |
109.5 |
109.4 |
| C7' |
C8' |
H8'A |
109.4 |
109.5 |
| C7' |
C8' |
H8'B |
109.5 |
109.4 |
| C8' |
C7' |
H7' |
103.3 |
109.4 |
| H8' |
C8' |
H8'A |
109.5 |
109.5 |
| H8' |
C8' |
H8'B |
109.4 |
109.4 |
| H8'A |
C8' |
H8'B |
109.5 |
109.5 |
| C6' |
C7' |
H7' |
112.5 |
109.5 |
| N9 |
C6' |
H6' |
107.6 |
109.5 |
| N9 |
C6' |
H6'A |
106.2 |
109.5 |
| H6' |
C6' |
H6'A |
114.1 |
109.4 |
| N1 |
C2 |
H2 |
116.4 |
118.8 |
| N6 |
C6 |
C5 |
124.5 |
120.8 |
| C6 |
C5 |
N7 |
134.4 |
134.7 |
| HN6 |
N6 |
HN6A |
109.4 |
120.0 |
| C5 |
N7 |
C8 |
103.9 |
109.4 |
| N7 |
C8 |
H8 |
122.9 |
125.0 |
Torsion Angles for TNM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C9' |
PA |
O1A |
HO1A |
33.3 |
300.0 |
| O1A |
PA |
O2A |
O3A |
237.9 |
239.9 |
| O2A |
PA |
O3A |
PB |
225.6 |
300.0 |
| O2A |
PA |
O1A |
HO1A |
274.4 |
180.0 |
| O3A |
PA |
O1A |
HO1A |
152.7 |
59.9 |
| PA |
O3A |
PB |
O2B |
316.9 |
44.9 |
| PA |
O3A |
PB |
O3B |
196.9 |
165.0 |
| PA |
O3A |
PB |
O1B |
77.2 |
284.9 |
| O2A |
PA |
O1A |
O3A |
121.6 |
120.1 |
| O1A |
PA |
O3A |
PB |
352.6 |
60.1 |
| HO1A |
O1A |
PA |
O3A |
152.7 |
59.9 |
| O2B |
PB |
O3A |
O3B |
119.9 |
239.9 |
| O1B |
PB |
O3A |
O2B |
120.3 |
240.0 |
| O1B |
PB |
O3A |
O3B |
240.3 |
120.0 |
| O3A |
PB |
O3B |
HO3B |
21.3 |
180.0 |
| O3A |
PB |
O1B |
HO1B |
170.5 |
300.0 |
| O3A |
PB |
O2B |
O3B |
250.0 |
120.1 |
| O3A |
PB |
O2B |
O1B |
110.9 |
240.0 |
| O1B |
PB |
O2B |
O3B |
139.0 |
240.0 |
| O2B |
PB |
O3B |
HO3B |
270.5 |
300.1 |
| O2B |
PB |
O1B |
HO1B |
281.7 |
180.0 |
| O3A |
PB |
O3B |
O2B |
110.7 |
239.9 |
| O3A |
PB |
O3B |
O1B |
249.8 |
120.0 |
| O1B |
PB |
O3B |
O2B |
220.9 |
120.0 |
| O3B |
PB |
O1B |
HO1B |
60.8 |
60.0 |
| O3A |
PB |
O1B |
O2B |
248.8 |
120.0 |
| O3A |
PB |
O1B |
O3B |
109.7 |
240.0 |
| O2B |
PB |
O1B |
O3B |
220.9 |
120.0 |
| O1B |
PB |
O3B |
HO3B |
131.4 |
60.0 |
| HO1B |
O1B |
PB |
O2B |
281.7 |
180.0 |
| HO1B |
O1B |
PB |
O3B |
60.8 |
60.0 |
| H9' |
C9' |
O9' |
H9'A |
120.2 |
120.0 |
| O9' |
C9' |
H9' |
H9'A |
240.2 |
239.9 |
| O9' |
C9' |
H9'A |
H9' |
119.8 |
120.0 |
| C7' |
O9' |
C9' |
H9' |
135.7 |
163.6 |
| C7' |
O9' |
C9' |
H9'A |
15.5 |
43.6 |
| O9' |
C7' |
C8' |
H8' |
261.7 |
65.2 |
| O9' |
C7' |
C8' |
H8'A |
21.8 |
185.3 |
| O9' |
C7' |
C8' |
H8'B |
141.8 |
305.3 |
| C8' |
C7' |
O9' |
H7' |
243.3 |
240.0 |
| C6' |
C7' |
O9' |
H7' |
121.8 |
120.0 |
| O9' |
C7' |
C8' |
H7' |
123.0 |
120.0 |
| H8' |
C8' |
C7' |
H8'A |
240.0 |
240.0 |
| H8' |
C8' |
C7' |
H8'B |
120.0 |
119.9 |
| H8'A |
C8' |
C7' |
H8'B |
240.0 |
240.0 |
| C6' |
C7' |
C8' |
H7' |
238.0 |
240.0 |
| C7' |
C8' |
H8' |
H8'A |
120.0 |
120.0 |
| C7' |
C8' |
H8' |
H8'B |
240.0 |
240.1 |
| H8' |
C8' |
C7' |
H7' |
138.7 |
305.2 |
| H8'A |
C8' |
H8' |
H8'B |
120.0 |
120.1 |
| C7' |
C8' |
H8'A |
H8' |
240.0 |
240.0 |
| C7' |
C8' |
H8'A |
H8'B |
120.0 |
120.0 |
| H8'A |
C8' |
C7' |
H7' |
258.7 |
65.3 |
| H8' |
C8' |
H8'A |
H8'B |
240.0 |
240.0 |
| C7' |
C8' |
H8'B |
H8' |
120.0 |
119.9 |
| C7' |
C8' |
H8'B |
H8'A |
240.0 |
240.0 |
| H8'B |
C8' |
C7' |
H7' |
18.7 |
185.3 |
| H8' |
C8' |
H8'B |
H8'A |
120.0 |
120.1 |
| O9' |
C7' |
C6' |
H7' |
237.2 |
240.0 |
| C6' |
C7' |
C8' |
H8' |
16.7 |
185.2 |
| C6' |
C7' |
C8' |
H8'A |
136.7 |
305.3 |
| C6' |
C7' |
C8' |
H8'B |
256.7 |
65.3 |
| C8' |
C7' |
C6' |
H7' |
116.7 |
120.0 |
| O9' |
C7' |
H7' |
C8' |
238.5 |
239.9 |
| H7' |
C7' |
C8' |
H8' |
138.7 |
305.2 |
| H7' |
C7' |
C8' |
H8'A |
258.7 |
65.3 |
| H7' |
C7' |
C8' |
H8'B |
18.7 |
185.3 |
| N9 |
C6' |
C7' |
H7' |
193.2 |
55.0 |
| H6' |
C6' |
N9 |
H6'A |
122.6 |
120.0 |
| H6' |
C6' |
C7' |
H7' |
313.2 |
175.0 |
| N9 |
C6' |
H6' |
H6'A |
242.4 |
240.0 |
| H6'A |
C6' |
C7' |
H7' |
75.8 |
295.0 |
| N9 |
C6' |
H6'A |
H6' |
118.4 |
120.0 |
| C4 |
N9 |
C6' |
H6' |
345.5 |
324.9 |
| C4 |
N9 |
C6' |
H6'A |
223.0 |
205.0 |
| C8 |
N9 |
C6' |
H6' |
155.7 |
144.7 |
| C8 |
N9 |
C6' |
H6'A |
33.1 |
24.7 |
| C6 |
N1 |
C2 |
H2 |
179.8 |
180.0 |
| N6 |
C6 |
C5 |
N7 |
357.6 |
360.0 |
| C6 |
C5 |
N7 |
C8 |
178.3 |
179.8 |
| HN6 |
N6 |
C6 |
C5 |
351.5 |
180.0 |
| HN6A |
N6 |
C6 |
C5 |
111.5 |
0.1 |
| C5 |
N7 |
C8 |
H8 |
183.0 |
180.0 |