PDB Chemical Component TN6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TN6
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C4 |
C3 |
1.632 |
1.530 |
C3 |
N |
1.483 |
1.469 |
N |
P |
1.529 |
1.683 |
N |
C1 |
1.439 |
1.469 |
P |
O2 |
1.542 |
1.610 |
P |
OD |
1.468 |
1.479 |
P |
OXT |
1.683 |
1.610 |
C1 |
C2 |
1.551 |
1.531 |
C4 |
H41C |
1.100 |
1.090 |
C4 |
H42C |
1.100 |
1.090 |
C4 |
H43C |
1.100 |
1.090 |
C3 |
H31C |
1.100 |
1.090 |
C3 |
H32C |
1.100 |
1.091 |
C1 |
H11C |
1.100 |
1.089 |
C1 |
H12C |
1.100 |
1.090 |
O2 |
H2 |
0.950 |
0.967 |
OXT |
HXT |
0.950 |
0.967 |
C2 |
H21C |
1.100 |
1.089 |
C2 |
H22C |
1.101 |
1.090 |
C2 |
H23C |
1.100 |
1.090 |
Bond Angles for TN6
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C4 |
C3 |
N |
106.6 |
109.5 |
C3 |
C4 |
H41C |
109.5 |
109.5 |
C3 |
C4 |
H42C |
109.4 |
109.5 |
C3 |
C4 |
H43C |
109.4 |
109.5 |
C4 |
C3 |
H31C |
110.4 |
109.4 |
C4 |
C3 |
H32C |
111.0 |
109.5 |
C3 |
N |
P |
114.1 |
111.0 |
C3 |
N |
C1 |
117.1 |
111.0 |
N |
C3 |
H31C |
110.4 |
109.5 |
N |
C3 |
H32C |
111.1 |
109.5 |
P |
N |
C1 |
116.0 |
111.0 |
N |
P |
O2 |
100.5 |
109.5 |
N |
P |
OD |
113.1 |
109.5 |
N |
P |
OXT |
113.5 |
109.5 |
N |
C1 |
C2 |
104.9 |
109.5 |
N |
C1 |
H11C |
111.0 |
109.5 |
N |
C1 |
H12C |
112.0 |
109.5 |
O2 |
P |
OD |
115.7 |
109.5 |
O2 |
P |
OXT |
99.2 |
109.5 |
P |
O2 |
H2 |
109.5 |
114.0 |
OD |
P |
OXT |
113.4 |
109.5 |
P |
OXT |
HXT |
109.5 |
114.0 |
C2 |
C1 |
H11C |
111.0 |
109.5 |
C2 |
C1 |
H12C |
112.0 |
109.4 |
C1 |
C2 |
H21C |
109.5 |
109.5 |
C1 |
C2 |
H22C |
109.4 |
109.5 |
C1 |
C2 |
H23C |
109.5 |
109.4 |
H41C |
C4 |
H42C |
109.5 |
109.5 |
H41C |
C4 |
H43C |
109.5 |
109.5 |
H42C |
C4 |
H43C |
109.5 |
109.5 |
H31C |
C3 |
H32C |
107.3 |
109.5 |
H11C |
C1 |
H12C |
106.0 |
109.5 |
H21C |
C2 |
H22C |
109.4 |
109.5 |
H21C |
C2 |
H23C |
109.4 |
109.5 |
H22C |
C2 |
H23C |
109.5 |
109.5 |
Torsion Angles for TN6
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C4 |
C3 |
N |
P |
112.0 |
145.0 |
C4 |
C3 |
N |
C1 |
252.2 |
268.9 |
N |
C3 |
C4 |
H31C |
240.0 |
240.0 |
N |
C3 |
C4 |
H32C |
121.1 |
120.0 |
H41C |
C4 |
C3 |
H42C |
240.0 |
240.0 |
H41C |
C4 |
C3 |
H43C |
120.0 |
120.0 |
H42C |
C4 |
C3 |
H43C |
240.0 |
240.0 |
H31C |
C3 |
C4 |
H32C |
241.1 |
240.0 |
N |
C3 |
C4 |
H41C |
333.7 |
60.0 |
N |
C3 |
C4 |
H42C |
93.8 |
180.0 |
N |
C3 |
C4 |
H43C |
213.8 |
300.0 |
C4 |
C3 |
N |
H31C |
120.0 |
120.0 |
C4 |
C3 |
N |
H32C |
238.9 |
240.0 |
P |
N |
C3 |
C1 |
219.8 |
236.0 |
C3 |
N |
P |
O2 |
342.9 |
64.0 |
C3 |
N |
P |
OD |
219.0 |
183.9 |
C3 |
N |
P |
OXT |
87.9 |
304.0 |
C3 |
N |
C1 |
C2 |
83.8 |
96.0 |
C3 |
N |
C1 |
H11C |
203.9 |
216.0 |
C3 |
N |
C1 |
H12C |
322.1 |
336.1 |
H31C |
C3 |
N |
H32C |
118.9 |
120.0 |
C3 |
N |
P |
C1 |
140.6 |
124.0 |
P |
N |
C3 |
H31C |
352.0 |
25.0 |
P |
N |
C3 |
H32C |
233.1 |
265.0 |
P |
N |
C1 |
C2 |
223.3 |
220.0 |
P |
N |
C1 |
H11C |
343.3 |
340.0 |
P |
N |
C1 |
H12C |
101.6 |
100.0 |
O2 |
P |
N |
OD |
124.0 |
240.0 |
O2 |
P |
N |
OXT |
255.0 |
120.0 |
N |
P |
O2 |
H2 |
58.3 |
300.0 |
OD |
P |
N |
OXT |
131.0 |
240.0 |
N |
P |
OXT |
HXT |
319.4 |
179.9 |
C3 |
N |
C1 |
P |
220.5 |
236.0 |
C1 |
N |
C3 |
H31C |
132.2 |
149.0 |
C1 |
N |
C3 |
H32C |
13.3 |
28.9 |
C1 |
N |
P |
O2 |
202.3 |
300.0 |
C1 |
N |
P |
OD |
78.3 |
60.0 |
C1 |
N |
P |
OXT |
307.3 |
180.0 |
C2 |
C1 |
N |
H11C |
240.0 |
240.0 |
C2 |
C1 |
N |
H12C |
121.7 |
119.9 |
N |
C1 |
C2 |
H21C |
86.5 |
300.0 |
N |
C1 |
C2 |
H22C |
206.5 |
60.0 |
N |
C1 |
C2 |
H23C |
326.5 |
180.0 |
H11C |
C1 |
N |
H12C |
241.7 |
240.0 |
O2 |
P |
N |
C1 |
202.3 |
300.0 |
N |
P |
O2 |
OD |
237.9 |
120.0 |
N |
P |
O2 |
OXT |
116.2 |
240.0 |
OD |
P |
O2 |
OXT |
238.3 |
120.0 |
O2 |
P |
OXT |
HXT |
65.2 |
59.9 |
OD |
P |
N |
C1 |
78.3 |
60.0 |
N |
P |
OD |
O2 |
115.2 |
240.0 |
N |
P |
OD |
OXT |
228.9 |
120.0 |
O2 |
P |
OD |
OXT |
113.8 |
240.0 |
OD |
P |
O2 |
H2 |
180.4 |
180.0 |
OD |
P |
OXT |
HXT |
188.6 |
300.0 |
OXT |
P |
N |
C1 |
307.3 |
180.0 |
N |
P |
OXT |
O2 |
254.2 |
120.0 |
N |
P |
OXT |
OD |
130.9 |
240.0 |
O2 |
P |
OXT |
OD |
236.7 |
120.0 |
OXT |
P |
O2 |
H2 |
302.1 |
60.0 |
N |
C1 |
C2 |
H11C |
120.0 |
120.0 |
N |
C1 |
C2 |
H12C |
238.3 |
240.0 |
H11C |
C1 |
C2 |
H12C |
118.3 |
120.0 |
H21C |
C2 |
C1 |
H22C |
240.0 |
240.0 |
H21C |
C2 |
C1 |
H23C |
120.0 |
120.0 |
H22C |
C2 |
C1 |
H23C |
240.0 |
240.0 |
H41C |
C4 |
C3 |
N |
333.7 |
60.0 |
C3 |
C4 |
H41C |
H42C |
120.0 |
120.0 |
C3 |
C4 |
H41C |
H43C |
240.0 |
240.0 |
H41C |
C4 |
C3 |
H31C |
93.7 |
180.0 |
H41C |
C4 |
C3 |
H32C |
212.6 |
300.0 |
H42C |
C4 |
H41C |
H43C |
120.1 |
120.0 |
H42C |
C4 |
C3 |
N |
93.8 |
180.0 |
C3 |
C4 |
H42C |
H41C |
240.0 |
240.0 |
C3 |
C4 |
H42C |
H43C |
120.0 |
120.0 |
H42C |
C4 |
C3 |
H31C |
213.8 |
300.0 |
H42C |
C4 |
C3 |
H32C |
332.6 |
60.0 |
H41C |
C4 |
H42C |
H43C |
240.0 |
240.0 |
H43C |
C4 |
C3 |
N |
213.8 |
300.0 |
C3 |
C4 |
H43C |
H41C |
120.0 |
120.0 |
C3 |
C4 |
H43C |
H42C |
240.0 |
240.0 |
H43C |
C4 |
C3 |
H31C |
333.8 |
60.0 |
H43C |
C4 |
C3 |
H32C |
92.7 |
180.0 |
H41C |
C4 |
H43C |
H42C |
120.1 |
120.0 |
C4 |
C3 |
H31C |
N |
242.3 |
240.0 |
H31C |
C3 |
C4 |
H41C |
93.7 |
180.0 |
H31C |
C3 |
C4 |
H42C |
213.8 |
300.0 |
H31C |
C3 |
C4 |
H43C |
333.8 |
60.0 |
C4 |
C3 |
H31C |
H32C |
121.1 |
120.0 |
H31C |
C3 |
N |
P |
352.0 |
25.0 |
H31C |
C3 |
N |
C1 |
132.2 |
149.0 |
N |
C3 |
H31C |
H32C |
238.8 |
240.0 |
C4 |
C3 |
H32C |
N |
118.5 |
120.0 |
H32C |
C3 |
C4 |
H41C |
212.6 |
300.0 |
H32C |
C3 |
C4 |
H42C |
332.6 |
60.0 |
H32C |
C3 |
C4 |
H43C |
92.7 |
180.0 |
C4 |
C3 |
H32C |
H31C |
239.2 |
240.1 |
H32C |
C3 |
N |
P |
233.1 |
265.0 |
H32C |
C3 |
N |
C1 |
13.3 |
28.9 |
N |
C3 |
H32C |
H31C |
120.8 |
120.0 |
N |
C1 |
H11C |
C2 |
243.7 |
240.0 |
N |
C1 |
H11C |
H12C |
121.8 |
120.0 |
C2 |
C1 |
H11C |
H12C |
238.2 |
240.0 |
H11C |
C1 |
C2 |
H21C |
326.5 |
180.0 |
H11C |
C1 |
C2 |
H22C |
86.5 |
300.0 |
H11C |
C1 |
C2 |
H23C |
206.5 |
60.0 |
N |
C1 |
H12C |
C2 |
117.6 |
120.0 |
N |
C1 |
H12C |
H11C |
238.8 |
240.0 |
C2 |
C1 |
H12C |
H11C |
121.2 |
120.0 |
H12C |
C1 |
C2 |
H21C |
208.3 |
60.0 |
H12C |
C1 |
C2 |
H22C |
328.2 |
180.0 |
H12C |
C1 |
C2 |
H23C |
88.3 |
299.9 |
H2 |
O2 |
P |
OD |
180.4 |
180.0 |
H2 |
O2 |
P |
OXT |
302.1 |
60.0 |
H21C |
C2 |
C1 |
H11C |
326.5 |
180.0 |
H21C |
C2 |
C1 |
H12C |
208.3 |
60.0 |
C1 |
C2 |
H21C |
H22C |
120.0 |
120.0 |
C1 |
C2 |
H21C |
H23C |
240.0 |
240.0 |
H22C |
C2 |
H21C |
H23C |
120.0 |
120.0 |
H22C |
C2 |
C1 |
H11C |
86.5 |
300.0 |
H22C |
C2 |
C1 |
H12C |
328.2 |
180.0 |
C1 |
C2 |
H22C |
H21C |
240.0 |
240.0 |
C1 |
C2 |
H22C |
H23C |
120.0 |
119.9 |
H21C |
C2 |
H22C |
H23C |
240.0 |
240.0 |
H23C |
C2 |
C1 |
H11C |
206.5 |
60.0 |
H23C |
C2 |
C1 |
H12C |
88.3 |
299.9 |
C1 |
C2 |
H23C |
H21C |
120.0 |
120.0 |
C1 |
C2 |
H23C |
H22C |
240.0 |
240.0 |
H21C |
C2 |
H23C |
H22C |
120.0 |
120.0 |