PDB Chemical Component TMX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TMX

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C8	N2	1.488	1.469
C9	N2	1.478	1.470
O3	C3	1.493	1.429
N2	C2	1.520	1.469
N2	C7	1.477	1.469
C2	C3	1.573	1.531
C2	C1	1.532	1.531
C3	C4	1.555	1.532
O1	C1	1.494	1.428
C1	O5	1.464	1.429
C4	O4	1.408	1.429
C4	C5	1.533	1.531
O5	C5	1.491	1.429
C5	C6	1.469	1.531
C6	O6	1.448	1.429
C1	H1	1.100	1.090
O1	HO1	0.950	0.967
C2	H2	1.100	1.090
C3	H3	1.100	1.091
O3	HO3	0.950	0.967
C4	H4	1.100	1.091
O4	HO4	0.950	0.967
C5	H5	1.100	1.090
C6	H61	1.100	1.090
C6	H62	1.100	1.090
O6	HO6	0.950	0.967
C7	H17	1.100	1.089
C7	H27	1.100	1.090
C7	H37	1.100	1.090
C8	H18	1.100	1.090
C8	H28	1.100	1.090
C8	H38	1.100	1.091
C9	H19	1.100	1.089
C9	H29	1.100	1.090
C9	H39	1.100	1.090

Bond Angles for TMX

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O3	C3	C4	110.8	109.5
O3	C3	H3	107.9	109.6
N2	C2	C3	113.5	109.5
N2	C2	H2	106.5	109.6
N2	C7	H17	109.5	109.5
N2	C7	H27	109.5	109.5
N2	C7	H37	109.5	109.4
C2	C3	C4	112.7	109.0
C3	C2	H2	104.8	109.5
C2	C3	H3	105.7	109.6
C2	C1	O5	116.3	109.4
C2	C1	H1	107.1	109.5
C3	C4	O4	104.4	109.5
C3	C4	C5	108.0	109.2
C4	C3	H3	107.3	109.5
C3	C4	H4	114.2	109.5
O1	C1	O5	106.3	109.5
O1	C1	H1	116.9	109.5
C1	O5	C5	118.1	114.1
O5	C1	H1	105.8	109.5
O4	C4	C5	111.1	109.5
O4	C4	H4	111.2	109.5
C4	O4	HO4	109.5	114.0
C4	C5	C6	110.3	109.5
C5	C4	H4	107.9	109.6
C4	C5	H5	107.2	109.5
O5	C5	C6	109.0	109.5
O5	C5	H5	108.4	109.6
C5	C6	O6	110.2	109.5
C6	C5	H5	110.0	109.5
C5	C6	H61	109.2	109.5
C5	C6	H62	109.3	109.5
O6	C6	H61	109.2	109.4
O6	C6	H62	109.3	109.5
C6	O6	HO6	109.5	114.0
H61	C6	H62	109.7	109.5
H17	C7	H27	109.4	109.5
H17	C7	H37	109.5	109.5
H27	C7	H37	109.4	109.4
H18	C8	H28	109.5	109.5
H18	C8	H38	109.5	109.4
H28	C8	H38	109.5	109.5
H19	C9	H29	109.4	109.5
H19	C9	H39	109.5	109.5
H29	C9	H39	109.5	109.5

Torsion Angles for TMX

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C8	N2	C2	H2	66.2	297.5
C8	N2	C7	H17	180.0	300.0
C8	N2	C7	H27	300.0	60.0
C8	N2	C7	H37	60.0	179.9
C9	N2	C2	H2	308.7	57.4
C9	N2	C7	H17	293.1	180.0
C9	N2	C7	H27	53.1	300.0
C9	N2	C7	H37	173.1	60.0
C2	C3	O3	C4	126.9	119.6
O3	C3	C2	H2	342.5	303.1
C2	C3	O3	H3	244.0	239.7
O3	C3	C4	O4	300.5	296.8
O3	C3	C4	C5	182.1	176.9
C4	C3	O3	H3	117.1	120.1
O3	C3	C4	H4	62.2	56.9
N2	C2	C3	C4	224.1	183.2
C3	C2	N2	H2	245.2	239.8
N2	C2	C3	H3	341.0	303.0
N2	C2	C1	O5	90.8	177.5
N2	C2	C1	H1	332.9	57.5
C7	N2	C2	C3	76.1	57.2
C7	N2	C2	H2	190.9	177.4
H17	C7	N2	H27	240.0	240.0
H17	C7	N2	H37	120.0	120.0
H27	C7	N2	H37	240.0	240.1
O3	C3	C2	C4	234.2	240.1
O3	C3	C2	H3	117.3	120.3
N2	C2	C3	H2	115.8	120.2
C3	C2	C1	O5	321.9	57.6
C3	C2	C1	H1	203.9	297.7
C2	C3	C4	O4	173.9	176.9
C2	C3	C4	C5	55.6	57.0
C4	C3	C2	H3	243.1	240.2
C2	C3	C4	H4	295.6	297.0
O1	C1	C2	O5	117.1	120.0
O1	C1	C2	H1	235.1	240.0
C2	C1	O5	C5	35.9	298.8
O5	C1	C2	H1	118.0	120.0
O3	C3	C4	H3	242.5	239.8
C4	C3	C2	H2	108.3	62.9
C2	C3	C4	H3	115.9	119.9
O4	C4	C3	C5	118.4	119.9
O4	C4	C3	H4	238.3	239.9
C3	C4	O4	HO4	180.0	180.0
C3	C4	C5	C6	179.0	182.4
C5	C4	C3	H4	120.0	120.0
C3	C4	C5	H5	59.2	62.5
C2	C1	O1	O5	236.2	240.1
C2	C1	O1	H1	118.5	120.0
O1	C1	O5	C5	279.6	178.8
O5	C1	O1	H1	242.2	239.9
C2	C1	O5	H1	241.3	240.0
O1	C1	O5	H1	124.9	120.1
C1	O5	C5	C6	136.6	181.2
C1	O5	C5	H5	256.4	301.2
C3	C4	O4	C5	243.8	240.3
O4	C4	C3	H3	58.0	57.0
C3	C4	O4	H4	123.7	120.1
O4	C4	C5	C6	65.1	62.5
C5	C4	O4	H4	239.8	239.8
O4	C4	C5	H5	305.3	302.5
C3	C4	C5	O4	114.0	119.9
C5	C4	C3	H3	299.6	297.1
C3	C4	C5	H4	236.1	240.1
C1	O5	C5	C4	14.4	61.2
O4	C4	C5	H4	122.1	120.1
C5	C4	O4	HO4	296.1	299.7
O5	C5	C4	C6	121.5	119.9
O5	C5	C4	H5	241.3	239.9
C4	C5	C6	O6	187.9	185.0
C6	C5	C4	H5	119.8	120.0
C4	C5	C6	H61	307.9	305.0
C4	C5	C6	H62	67.9	65.0
C5	O5	C1	H1	154.6	58.7
C4	C5	O5	C6	237.8	240.1
O5	C5	C4	H4	64.4	62.3
C4	C5	O5	H5	118.0	120.0
O5	C5	C6	O6	64.8	65.1
C6	C5	O5	H5	240.2	240.0
O5	C5	C6	H61	184.8	185.1
O5	C5	C6	H62	304.8	305.1
C6	C5	C4	H4	302.9	302.4
C4	C5	C6	H5	241.9	240.0
O5	C5	C6	H5	118.8	120.1
O6	C6	C5	H61	240.0	240.0
O6	C6	C5	H62	120.0	120.0
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	240.0	240.0
O6	C6	C5	H5	306.0	305.0
C5	C6	O6	H61	120.0	120.0
C5	C6	O6	H62	240.0	240.0
H61	C6	O6	H62	120.0	120.0
C2	C1	H1	O5	124.6	119.9
O1	C1	H1	O5	242.0	239.9
H1	C1	O5	C5	154.6	58.7
HO1	O1	C1	O5	303.7	300.0
HO1	O1	C1	H1	61.5	60.0
N2	C2	H2	C3	239.4	239.8
H2	C2	C3	C4	108.3	62.9
H2	C2	C3	H3	225.2	182.8
H2	C2	C1	O5	207.0	297.7
H2	C2	C1	H1	89.0	177.7
O3	C3	H3	C4	119.4	120.2
C2	C3	H3	C4	239.5	240.4
H3	C3	C2	H2	225.2	182.8
H3	C3	C4	O4	58.0	57.0
H3	C3	C4	C5	299.6	297.1
H3	C3	C4	H4	179.7	177.0
HO3	O3	C3	C4	53.1	60.4
HO3	O3	C3	H3	296.0	300.3
C3	C4	H4	O4	242.1	239.9
C3	C4	H4	C5	120.0	119.7
H4	C4	C3	H3	179.7	177.0
O4	C4	H4	C5	237.9	239.8
H4	C4	O4	HO4	56.3	59.9
H4	C4	C5	C6	302.9	302.4
H4	C4	C5	H5	183.2	182.4
HO4	O4	C4	C5	296.1	299.7
HO4	O4	C4	H4	56.3	59.9
C4	C5	H5	C6	119.9	120.0
H5	C5	C4	H4	183.2	182.4
O5	C5	H5	C6	240.8	240.0
H5	C5	C6	O6	306.0	305.0
H5	C5	C6	H61	66.0	65.0
H5	C5	C6	H62	186.0	185.0
C5	C6	H61	O6	239.4	240.0
H61	C6	C5	H5	66.0	65.0
C5	C6	H61	H62	119.7	120.0
O6	C6	H61	H62	240.3	240.0
H61	C6	O6	HO6	60.0	60.0
C5	C6	H62	O6	120.6	120.0
H62	C6	C5	H5	186.0	185.0
C5	C6	H62	H61	240.3	240.0
O6	C6	H62	H61	119.7	120.0
H62	C6	O6	HO6	300.0	300.0
HO6	O6	C6	H61	60.0	60.0
HO6	O6	C6	H62	300.0	300.0
N2	C7	H17	H27	120.0	120.0
N2	C7	H17	H37	240.0	240.0
H27	C7	H17	H37	120.0	120.0
N2	C7	H27	H17	240.0	240.0
N2	C7	H27	H37	120.0	119.9
H17	C7	H27	H37	240.0	240.0
N2	C7	H37	H17	120.1	120.0
N2	C7	H37	H27	240.0	240.0
H17	C7	H37	H27	119.9	120.0
H28	C8	H18	H38	120.0	120.0
H18	C8	H28	H38	240.0	240.1
H18	C8	H38	H28	120.0	120.0
H29	C9	H19	H39	119.9	120.0
H19	C9	H29	H39	240.1	240.0
H19	C9	H39	H29	119.9	120.0