PDB Chemical Component TMM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TMM
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.398 |
1.393 |
C1 |
C6 |
1.392 |
1.393 |
C1 |
C1A |
1.523 |
1.478 |
C2 |
C3 |
1.392 |
1.395 |
C2 |
H2 |
1.102 |
1.079 |
C3 |
C4 |
1.392 |
1.394 |
C3 |
C3A |
1.572 |
1.478 |
C4 |
C5 |
1.385 |
1.394 |
C4 |
H4 |
1.104 |
1.080 |
C5 |
C6 |
1.375 |
1.395 |
C5 |
C5A |
1.514 |
1.478 |
C6 |
H6 |
1.102 |
1.080 |
C1A |
O1A |
1.230 |
1.215 |
C1A |
O2A |
1.329 |
1.346 |
C3A |
O3A |
1.241 |
1.215 |
C3A |
O4A |
1.401 |
1.346 |
C5A |
O5A |
1.233 |
1.213 |
C5A |
O6A |
1.233 |
1.348 |
O2A |
HO2 |
0.950 |
0.967 |
O4A |
HO4 |
0.951 |
0.967 |
O6A |
HO6 |
0.950 |
0.966 |
Bond Angles for TMM
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
118.8 |
120.1 |
C2 |
C1 |
C1A |
123.4 |
120.0 |
C1 |
C2 |
C3 |
121.4 |
119.9 |
C1 |
C2 |
H2 |
119.6 |
120.1 |
C6 |
C1 |
C1A |
117.7 |
120.0 |
C1 |
C6 |
C5 |
121.0 |
120.0 |
C1 |
C6 |
H6 |
120.2 |
120.1 |
C1 |
C1A |
O1A |
121.4 |
120.0 |
C1 |
C1A |
O2A |
117.3 |
120.0 |
C3 |
C2 |
H2 |
119.0 |
120.0 |
C2 |
C3 |
C4 |
117.4 |
120.0 |
C2 |
C3 |
C3A |
128.1 |
120.0 |
C4 |
C3 |
C3A |
114.2 |
120.0 |
C3 |
C4 |
C5 |
122.3 |
120.0 |
C3 |
C4 |
H4 |
119.1 |
120.0 |
C3 |
C3A |
O3A |
109.8 |
120.0 |
C3 |
C3A |
O4A |
120.3 |
120.0 |
C5 |
C4 |
H4 |
118.6 |
120.0 |
C4 |
C5 |
C6 |
119.0 |
120.0 |
C4 |
C5 |
C5A |
125.4 |
120.0 |
C6 |
C5 |
C5A |
115.7 |
120.0 |
C5 |
C6 |
H6 |
118.8 |
120.0 |
C5 |
C5A |
O5A |
120.3 |
120.0 |
C5 |
C5A |
O6A |
117.7 |
120.0 |
O1A |
C1A |
O2A |
121.2 |
120.0 |
C1A |
O2A |
HO2 |
117.3 |
120.1 |
O3A |
C3A |
O4A |
123.6 |
120.0 |
C3A |
O4A |
HO4 |
120.3 |
120.1 |
O5A |
C5A |
O6A |
122.0 |
120.0 |
C5A |
O6A |
HO6 |
117.7 |
120.0 |
Torsion Angles for TMM
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
C1A |
182.7 |
180.2 |
C2 |
C1 |
C6 |
C5 |
358.5 |
359.6 |
C2 |
C1 |
C6 |
H6 |
178.5 |
180.0 |
C2 |
C1 |
C1A |
O1A |
14.7 |
-0.0 |
C2 |
C1 |
C1A |
O2A |
195.6 |
180.0 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
C4 |
2.8 |
-0.0 |
C1 |
C2 |
C3 |
C3A |
175.8 |
180.0 |
C2 |
C1 |
C6 |
C1A |
177.5 |
179.8 |
C6 |
C1 |
C2 |
C3 |
359.6 |
0.2 |
C6 |
C1 |
C2 |
H2 |
179.6 |
180.2 |
C6 |
C1 |
C1A |
O1A |
192.0 |
179.8 |
C6 |
C1 |
C1A |
O2A |
12.9 |
359.8 |
C4 |
C5 |
C6 |
C1 |
0.9 |
0.4 |
C1 |
C6 |
C5 |
C5A |
180.4 |
180.2 |
C5 |
C6 |
C1 |
H6 |
180.0 |
179.6 |
C2 |
C1 |
C1A |
C6 |
182.6 |
180.2 |
C1A |
C1 |
C2 |
C3 |
176.9 |
180.0 |
C1A |
C1 |
C2 |
H2 |
356.9 |
360.0 |
C1A |
C1 |
C6 |
C5 |
181.0 |
179.8 |
C1A |
C1 |
C6 |
H6 |
1.0 |
0.2 |
O1A |
C1A |
C1 |
O2A |
179.1 |
180.0 |
C1 |
C1A |
O2A |
HO2 |
180.0 |
180.0 |
C3 |
C2 |
C1 |
C6 |
359.6 |
0.2 |
C3 |
C2 |
C1 |
C1A |
176.9 |
180.0 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
C4 |
C3 |
C2 |
C3A |
187.0 |
180.0 |
C2 |
C3 |
C4 |
C5 |
356.5 |
-0.0 |
C2 |
C3 |
C4 |
H4 |
176.5 |
180.0 |
C2 |
C3 |
C3A |
O3A |
199.5 |
-0.0 |
C2 |
C3 |
C3A |
O4A |
46.4 |
180.0 |
H2 |
C2 |
C1 |
C6 |
179.6 |
180.2 |
H2 |
C2 |
C1 |
C1A |
356.9 |
-0.0 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
H2 |
C2 |
C3 |
C4 |
182.8 |
180.0 |
H2 |
C2 |
C3 |
C3A |
355.8 |
360.0 |
C4 |
C3 |
C2 |
H2 |
182.8 |
180.0 |
C2 |
C3 |
C4 |
C3A |
174.0 |
180.0 |
C4 |
C3 |
C3A |
O3A |
12.7 |
180.0 |
C4 |
C3 |
C3A |
O4A |
219.6 |
-0.0 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C6 |
1.7 |
359.8 |
C3 |
C4 |
C5 |
C5A |
182.2 |
180.0 |
C3A |
C3 |
C2 |
H2 |
355.8 |
-0.0 |
C2 |
C3 |
C3A |
C4 |
186.8 |
180.0 |
C3A |
C3 |
C4 |
C5 |
182.6 |
180.0 |
C3A |
C3 |
C4 |
H4 |
2.6 |
-0.0 |
O3A |
C3A |
C3 |
O4A |
153.1 |
180.0 |
C3 |
C3A |
O4A |
HO4 |
180.0 |
180.0 |
C1 |
C6 |
C5 |
C4 |
0.9 |
0.4 |
C5 |
C4 |
C3 |
C3A |
182.6 |
180.0 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
C5A |
179.5 |
179.8 |
C4 |
C5 |
C6 |
H6 |
180.9 |
180.0 |
C4 |
C5 |
C5A |
O5A |
330.9 |
359.9 |
C4 |
C5 |
C5A |
O6A |
150.9 |
180.0 |
H4 |
C4 |
C3 |
C3A |
2.6 |
-0.0 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
C6 |
181.7 |
179.8 |
H4 |
C4 |
C5 |
C5A |
2.2 |
360.0 |
C5 |
C6 |
C1 |
C1A |
181.0 |
179.8 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.4 |
C6 |
C5 |
C4 |
H4 |
181.7 |
179.8 |
C4 |
C5 |
C6 |
C5A |
180.5 |
180.2 |
C6 |
C5 |
C5A |
O5A |
151.4 |
180.1 |
C6 |
C5 |
C5A |
O6A |
331.4 |
0.2 |
C5A |
C5 |
C4 |
H4 |
2.2 |
-0.0 |
C4 |
C5 |
C5A |
C6 |
179.5 |
179.8 |
C5A |
C5 |
C6 |
H6 |
0.4 |
359.8 |
O5A |
C5A |
C5 |
O6A |
180.0 |
179.9 |
C5 |
C5A |
O6A |
HO6 |
180.0 |
180.0 |
H6 |
C6 |
C1 |
C1A |
1.0 |
0.2 |
C1 |
C6 |
H6 |
C5 |
180.0 |
179.6 |
H6 |
C6 |
C5 |
C5A |
0.4 |
359.8 |
C1 |
C1A |
O1A |
O2A |
180.9 |
180.0 |
O1A |
C1A |
O2A |
HO2 |
0.9 |
360.0 |
C1 |
C1A |
O2A |
O1A |
179.1 |
180.0 |
C3 |
C3A |
O3A |
O4A |
208.0 |
180.0 |
O3A |
C3A |
O4A |
HO4 |
30.8 |
360.0 |
C3 |
C3A |
O4A |
O3A |
149.2 |
180.0 |
C5 |
C5A |
O5A |
O6A |
180.0 |
180.1 |
O5A |
C5A |
O6A |
HO6 |
0.1 |
0.1 |
C5 |
C5A |
O6A |
O5A |
180.0 |
179.9 |