PDB Chemical Component TMJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TMJ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C5	1.535	1.508
C1	C2	1.528	1.530
C1	H11A	1.100	1.097
C1	H12A	1.100	1.096
C10	C11	1.389	1.390
C10	C12	1.395	1.389
C10	N2	1.472	1.438
C14	CL1	1.731	1.722
C14	C15	1.390	1.395
C14	C13	1.393	1.395
C13	C12	1.391	1.395
C13	H13	1.080	1.086
C15	C11	1.395	1.394
C15	H15	1.080	1.087
C12	H12	1.080	1.087
C11	H11	1.080	1.087
C6	C7	1.392	1.394
C6	C5	1.394	1.401
C6	H6	1.080	1.088
C4	C9	1.392	1.401
C4	C5	1.391	1.406
C4	C3	1.532	1.509
C2	N1	1.472	1.462
C2	H21	1.100	1.096
C2	H22	1.100	1.097
C3	N1	1.469	1.468
C3	H31	1.100	1.098
C3	H32	1.100	1.096
N2	S1	1.630	1.722
N2	HN2	1.000	1.029
S1	O1	1.500	1.458
S1	O2	1.429	1.458
S1	C8	1.750	1.746
C8	C7	1.392	1.393
C8	C9	1.391	1.395
C9	H9	1.080	1.086
C7	H7	1.080	1.086
N1	HN1	1.000	1.020

Bond Angles for TMJ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C5	112.0	112.6
C5	C1	H11A	108.6	108.1
C5	C1	H12A	108.1	109.9
C1	C5	C6	119.0	120.1
C1	C5	C4	121.4	120.2
C2	C1	H11A	108.6	109.6
C2	C1	H12A	108.0	108.8
C1	C2	N1	109.2	110.2
C1	C2	H21	109.5	109.1
C1	C2	H22	109.6	110.8
H11A	C1	H12A	111.5	107.8
C12	C10	C11	120.0	120.8
C11	C10	N2	119.3	119.6
C10	C11	C15	119.9	119.6
C10	C11	H11	120.0	120.9
C12	C10	N2	120.6	119.6
C10	C12	C13	120.1	119.6
C10	C12	H12	119.9	121.0
C10	N2	S1	121.9	118.1
C10	N2	HN2	105.5	114.7
C15	C14	CL1	119.5	120.0
C13	C14	CL1	120.5	120.0
C13	C14	C15	120.0	120.0
C14	C15	C11	120.1	120.0
C14	C15	H15	120.0	120.7
C14	C13	C12	119.9	120.0
C14	C13	H13	120.1	120.8
C12	C13	H13	120.0	119.2
C13	C12	H12	120.0	119.4
C11	C15	H15	120.0	119.2
C15	C11	H11	120.1	119.5
C7	C6	C5	120.3	120.3
C7	C6	H6	119.8	119.4
C6	C7	C8	119.9	120.0
C6	C7	H7	120.0	120.1
C5	C6	H6	119.8	120.3
C6	C5	C4	119.7	119.7
C9	C4	C5	120.1	119.5
C3	C4	C9	119.4	119.9
C4	C9	C8	120.2	120.4
C4	C9	H9	119.9	120.5
C3	C4	C5	120.6	120.5
C4	C3	N1	110.0	113.6
C4	C3	H31	109.3	108.7
C4	C3	H32	109.2	109.3
N1	C2	H21	109.6	109.5
N1	C2	H22	109.6	110.3
C2	N1	C3	110.7	110.5
C2	N1	HN1	109.1	109.5
H21	C2	H22	109.3	106.9
N1	C3	H31	109.3	109.7
N1	C3	H32	109.2	107.7
C3	N1	HN1	109.0	109.0
H31	C3	H32	109.9	107.7
S1	N2	HN2	105.5	116.0
N2	S1	O1	108.6	109.5
N2	S1	O2	109.9	108.1
N2	S1	C8	109.9	102.8
O2	S1	O1	109.3	118.8
O1	S1	C8	109.6	108.7
O2	S1	C8	109.5	107.8
S1	C8	C7	120.3	120.0
S1	C8	C9	119.9	120.0
C9	C8	C7	119.8	120.1
C8	C7	H7	120.0	119.8
C8	C9	H9	119.9	119.1

Torsion Angles for TMJ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C5	H11A	240.0	238.8
C2	C1	C5	H12A	118.9	121.5
C5	C1	C2	N1	44.1	48.2
C5	C1	C2	H21	164.1	168.4
C5	C1	C2	H22	284.0	285.9
H11A	C1	C5	H12A	238.9	242.6
C7	C6	C5	C1	180.0	178.5
C1	C5	C6	H6	360.0	358.5
C6	C5	C1	C4	179.9	182.7
C9	C4	C5	C1	180.2	181.0
C3	C4	C5	C1	1.1	3.9
C5	C1	C2	H11A	120.0	120.3
C5	C1	C2	H12A	241.1	237.9
C2	C1	C5	C6	168.2	164.7
C2	C1	C5	C4	348.2	342.0
H11A	C1	C2	H12A	121.1	117.6
N1	C2	C1	H21	240.0	239.8
N1	C2	C1	H22	120.1	122.4
C1	C2	N1	C3	290.3	294.4
C1	C2	N1	HN1	170.3	174.3
H21	C2	C1	H22	240.1	242.6
C2	C1	H11A	C5	122.1	123.0
C5	C1	H11A	H12A	119.0	118.7
H11A	C1	C5	C6	288.1	285.9
H11A	C1	C5	C4	108.2	103.2
C2	C1	H11A	H12A	241.0	241.7
H11A	C1	C2	N1	284.1	287.9
H11A	C1	C2	H21	44.1	48.1
H11A	C1	C2	H22	164.1	165.6
C2	C1	H12A	C5	238.6	236.3
C5	C1	H12A	H11A	240.7	242.5
H12A	C1	C5	C6	49.3	43.3
H12A	C1	C5	C4	229.3	220.6
C2	C1	H12A	H11A	119.3	118.8
H12A	C1	C2	N1	163.0	170.3
H12A	C1	C2	H21	283.0	290.5
H12A	C1	C2	H22	42.9	47.9
C12	C10	C11	N2	177.4	180.0
C11	C10	C12	C13	359.5	359.9
C11	C10	C12	H12	179.6	180.0
C11	C10	N2	S1	218.9	240.0
C11	C10	N2	HN2	338.9	22.5
C14	C15	C11	C10	359.7	360.0
C10	C11	C15	H15	179.7	180.0
C15	C11	C10	H11	180.0	180.0
C11	C10	C12	N2	182.6	180.0
C12	C10	C11	C15	0.6	0.0
C12	C10	C11	H11	180.6	180.0
C12	C10	N2	S1	41.6	60.0
C12	C10	N2	HN2	161.5	202.5
C14	C13	C12	C10	360.0	0.0
C10	C12	C13	H13	179.9	180.0
C13	C12	C10	H12	180.0	179.9
C12	C10	N2	C11	182.6	180.0
N2	C10	C11	C15	183.2	180.0
N2	C10	C11	H11	3.2	0.0
N2	C10	C12	C13	176.9	180.0
N2	C10	C12	H12	356.9	0.0
S1	N2	C10	HN2	240.0	217.5
C10	N2	S1	O1	129.8	296.6
C10	N2	S1	O2	10.3	165.8
C10	N2	S1	C8	249.7	52.0
C13	C14	CL1	C15	179.1	180.0
CL1	C14	C15	C11	178.8	180.0
CL1	C14	C15	H15	358.8	360.0
CL1	C14	C13	C12	181.3	180.0
CL1	C14	C13	H13	1.3	360.0
C10	C11	C15	C14	359.7	360.0
C13	C14	C15	CL1	180.9	180.0
C15	C14	C13	C12	0.4	-0.0
C15	C14	C13	H13	180.4	180.0
C11	C15	C14	H15	180.0	180.0
C14	C15	C11	H11	179.7	180.0
C10	C12	C13	C14	360.0	0.0
C15	C14	C13	CL1	179.1	180.0
C13	C14	C15	C11	359.8	360.0
C13	C14	C15	H15	179.8	180.0
C12	C13	C14	H13	180.0	180.0
C14	C13	C12	H12	179.9	180.0
C13	C12	C10	C11	359.5	359.9
C13	C12	C10	N2	176.9	180.0
C10	C12	C13	H12	180.0	180.1
C12	C13	C14	CL1	181.3	180.0
C12	C13	C14	C15	0.4	360.0
C14	C13	C12	H13	180.0	180.0
H13	C13	C14	CL1	1.3	360.0
H13	C13	C14	C15	180.4	180.0
C14	C13	H13	C12	180.0	180.0
H13	C13	C12	H12	359.9	360.0
C15	C11	C10	N2	183.2	180.0
C10	C11	C15	H11	180.0	180.0
C11	C15	C14	CL1	178.8	180.0
C14	C15	C11	H15	180.0	180.0
H15	C15	C14	CL1	358.8	360.0
C14	C15	H15	C11	180.0	180.0
H15	C15	C11	H11	359.7	0.0
H12	C12	C10	C11	179.6	180.0
H12	C12	C10	N2	356.9	0.0
C10	C12	H12	C13	180.0	179.9
H12	C12	C13	H13	359.9	360.0
H11	C11	C10	N2	3.2	0.0
C10	C11	H11	C15	180.0	180.0
H11	C11	C15	H15	359.7	0.0
C1	C5	C6	C7	180.0	178.5
C5	C6	C7	H6	180.0	180.0
C7	C6	C5	C4	359.9	1.2
S1	C8	C7	C6	179.9	179.8
C9	C8	C7	C6	0.2	359.7
C8	C7	C6	H7	180.0	180.0
C6	C5	C1	H11A	288.1	285.9
C6	C5	C1	H12A	49.3	43.3
C1	C5	C6	C4	180.1	177.3
C7	C6	C5	H6	180.0	180.0
C5	C6	C7	C8	359.9	359.8
C5	C6	C7	H7	179.9	179.8
C9	C4	C5	C6	0.3	358.3
C3	C4	C5	C6	181.2	181.2
C7	C6	H6	C5	180.0	180.0
H6	C6	C7	C8	179.9	179.8
H6	C6	C7	H7	359.9	359.8
H6	C6	C5	C4	179.9	181.2
C1	C5	C4	C9	180.2	181.0
C6	C5	C4	C9	0.3	358.3
C3	C4	C9	C5	179.1	177.1
C9	C4	C3	N1	158.0	163.2
C9	C4	C3	H31	278.0	285.6
C9	C4	C3	H32	38.2	42.8
S1	C8	C9	C4	180.2	179.7
C4	C9	C8	C7	360.0	359.7
C8	C9	C4	H9	180.0	179.9
C4	C5	C1	H11A	108.2	103.2
C4	C5	C1	H12A	229.3	220.6
C1	C5	C4	C6	179.9	182.7
C4	C5	C6	H6	179.9	181.2
C3	C4	C5	C9	180.9	182.9
C5	C4	C9	C8	359.8	1.2
C5	C4	C9	H9	179.8	181.3
C5	C4	C3	N1	337.1	340.2
C5	C4	C3	H31	97.1	102.6
C5	C4	C3	H32	217.3	219.9
C1	C5	C4	C3	1.1	3.9
C6	C5	C4	C3	181.2	181.2
C9	C4	C3	C5	180.9	182.9
C3	C4	C9	C8	178.9	178.3
C3	C4	C9	H9	358.8	358.5
C2	N1	C3	C4	57.2	50.6
N1	C3	C4	H31	240.0	237.6
N1	C3	C4	H32	119.8	120.3
C4	C3	N1	HN1	177.2	171.0
H31	C3	C4	H32	239.8	242.7
N1	C2	C1	C5	44.1	48.2
N1	C2	C1	H11A	284.1	287.9
N1	C2	C1	H12A	163.0	170.3
C1	C2	N1	H21	120.0	120.0
C1	C2	N1	H22	239.9	237.4
C4	C3	N1	C2	57.2	50.6
H21	C2	N1	H22	119.9	117.4
C2	N1	C3	H31	297.3	288.7
C2	N1	C3	H32	177.0	171.8
C3	N1	C2	HN1	120.0	120.1
H21	C2	C1	C5	164.1	168.4
H21	C2	C1	H11A	44.1	48.1
H21	C2	C1	H12A	283.0	290.5
C1	C2	H21	N1	240.2	239.3
C1	C2	H21	H22	120.1	119.8
N1	C2	H21	H22	239.9	240.5
H21	C2	N1	C3	170.3	174.4
H21	C2	N1	HN1	50.3	54.3
H22	C2	C1	C5	284.0	285.9
H22	C2	C1	H11A	164.1	165.6
H22	C2	C1	H12A	42.9	47.9
C1	C2	H22	N1	119.9	122.3
C1	C2	H22	H21	239.9	241.2
N1	C2	H22	H21	120.1	118.9
H22	C2	N1	C3	50.4	57.0
H22	C2	N1	HN1	290.4	296.9
N1	C3	C4	C9	158.0	163.2
N1	C3	C4	C5	337.1	340.2
C4	C3	N1	H31	120.0	121.8
C4	C3	N1	H32	240.2	238.8
C3	N1	C2	H21	170.3	174.4
C3	N1	C2	H22	50.4	57.0
C2	N1	C3	HN1	240.0	239.5
H31	C3	N1	H32	120.3	117.0
H31	C3	C4	C9	278.0	285.6
H31	C3	C4	C5	97.1	102.6
C4	C3	H31	N1	239.6	235.3
C4	C3	H31	H32	119.8	118.3
N1	C3	H31	H32	240.2	243.0
H31	C3	N1	HN1	57.3	49.2
H32	C3	C4	C9	38.2	42.8
H32	C3	C4	C5	217.3	219.9
C4	C3	H32	N1	120.3	123.9
C4	C3	H32	H31	240.2	242.1
N1	C3	H32	H31	119.9	118.3
H32	C3	N1	HN1	297.0	292.2
C10	N2	S1	HN2	120.0	142.0
O2	S1	N2	O1	240.5	229.2
O1	S1	N2	C8	240.1	244.6
O2	S1	N2	C8	120.5	113.8
N2	S1	C8	C7	35.5	90.0
N2	S1	C8	C9	215.2	270.1
C10	N2	HN2	S1	229.8	216.7
HN2	N2	S1	O1	9.8	154.6
HN2	N2	S1	O2	250.3	23.8
HN2	N2	S1	C8	129.8	270.0
O1	S1	N2	HN2	9.8	154.6
N2	S1	O1	O2	240.1	235.2
N2	S1	O1	C8	120.1	111.6
O2	S1	O1	C8	240.0	236.4
O1	S1	C8	C7	154.8	206.0
O1	S1	C8	C9	334.6	26.1
O2	S1	N2	HN2	250.3	23.8
N2	S1	O2	O1	119.1	125.5
N2	S1	O2	C8	239.2	249.5
O1	S1	O2	C8	120.1	124.0
O2	S1	C8	C7	274.7	336.0
O2	S1	C8	C9	94.4	156.1
C6	C7	C8	S1	179.9	179.8
C4	C9	C8	S1	180.2	179.7
C8	S1	N2	HN2	129.8	270.0
N2	S1	C8	O1	240.7	244.0
N2	S1	C8	O2	120.8	114.0
O2	S1	C8	O1	119.9	129.9
C9	C8	S1	C7	179.8	180.1
S1	C8	C7	H7	360.0	359.8
S1	C8	C9	H9	0.2	359.5
C8	C7	C6	C5	359.9	359.8
C8	C7	C6	H6	179.9	179.8
C6	C7	C8	H7	180.0	180.0
S1	C8	C7	C9	179.8	180.1
C7	C8	C9	H9	180.0	179.6
C6	C7	C8	C9	0.2	359.7
C8	C9	C4	C5	359.8	1.2
C4	C9	C8	H9	180.0	180.1
S1	C8	C9	C7	180.2	179.9
C9	C8	C7	H7	180.2	179.7
H9	C9	C4	C5	179.8	181.3
C4	C9	H9	C8	180.0	179.9
H9	C9	C8	C7	180.0	179.6
H7	C7	C6	C5	179.9	179.8
H7	C7	C6	H6	359.9	359.8
C6	C7	H7	C8	180.0	180.0
HN1	N1	C2	H21	50.3	54.3
HN1	N1	C2	H22	290.4	296.9
C2	N1	HN1	C3	121.0	121.1
HN1	N1	C3	H31	57.3	49.2
HN1	N1	C3	H32	297.0	292.2