PDB Chemical Component TMF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TMF

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.331 1.360
N1 C8A 1.320 1.374
N1 HN1 1.019 0.970
C2 NA2 1.336 1.371
C2 N3 1.336 1.316
NA2 HN21 1.020 0.970
NA2 HN22 1.020 0.970
N3 C4 1.343 1.344
C4 O4 1.374 1.222
C4 C4A 1.417 1.406
C4A N5 1.369 1.389
C4A C8A 1.404 1.389
N5 C6 1.491 1.486
N5 CP1 1.472 1.469
C6 C7 1.462 1.506
C6 C9 1.469 1.535
C6 H6 1.115 1.090
C7 N8 1.461 1.297
C7 H7 1.103 1.080
N8 C8A 1.231 1.357
C9 N10 1.470 1.488
C9 H91 1.115 1.091
C9 H92 1.115 1.090
N10 C14 1.357 1.390
N10 CP1 1.485 1.493
C11 C12 1.407 1.397
C11 C16 1.410 1.398
C11 C 1.452 1.475
C12 C13 1.405 1.376
C12 H12 1.103 1.080
C13 C14 1.417 1.392
C13 H13 1.103 1.079
C14 C15 1.411 1.391
C15 C16 1.399 1.376
C15 H15 1.103 1.079
C16 H16 1.103 1.080
C O 1.233 1.216
C N 1.345 1.347
N CA 1.489 1.465
N HN 1.019 0.970
CA CB 1.503 1.529
CA CT 1.534 1.507
CA HA 1.114 1.090
CB CG 1.526 1.530
CB HB1 1.115 1.090
CB HB2 1.115 1.091
CG CD 1.523 1.507
CG HG1 1.115 1.090
CG HG2 1.115 1.090
CD OE1 1.253 1.209
CD OE2 1.247 1.341
OE2 HOE2 0.951 0.967
CT O1 1.252 1.208
CT O2 1.251 1.342
O2 HO2 0.950 0.967
CP1 HCP1 1.115 1.089
CP1 HCP2 1.115 1.089

Bond Angles for TMF

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C8A 119.3 119.9
C2 N1 HN1 108.7 120.0
N1 C2 NA2 119.9 118.9
N1 C2 N3 120.2 122.1
C8A N1 HN1 108.7 120.1
N1 C8A C4A 122.7 118.2
N1 C8A N8 115.5 122.1
NA2 C2 N3 120.0 119.0
C2 NA2 HN21 119.9 120.0
C2 NA2 HN22 108.4 120.0
C2 N3 C4 124.7 121.1
HN21 NA2 HN22 108.5 120.0
N3 C4 O4 121.8 120.5
N3 C4 C4A 116.0 119.0
O4 C4 C4A 122.2 120.5
C4 C4A N5 122.9 124.9
C4 C4A C8A 117.2 119.6
N5 C4A C8A 119.4 115.5
C4A N5 C6 119.2 120.4
C4A N5 CP1 121.8 133.1
C4A C8A N8 121.8 119.7
C6 N5 CP1 101.6 106.3
N5 C6 C7 113.9 106.1
N5 C6 C9 108.3 105.7
N5 C6 H6 107.0 110.9
N5 CP1 N10 108.5 104.0
N5 CP1 HCP1 112.6 110.7
N5 CP1 HCP2 112.6 110.2
C7 C6 C9 108.6 112.1
C7 C6 H6 106.7 110.9
C6 C7 N8 111.6 120.2
C6 C7 H7 124.2 119.9
C9 C6 H6 112.4 110.9
C6 C9 N10 106.3 104.7
C6 C9 H91 113.4 110.4
C6 C9 H92 113.4 110.4
N8 C7 H7 124.2 119.9
C7 N8 C8A 123.8 123.7
N10 C9 H91 113.3 110.4
N10 C9 H92 113.4 110.4
C9 N10 C14 120.7 106.7
C9 N10 CP1 99.2 103.4
H91 C9 H92 97.1 110.5
C14 N10 CP1 120.0 106.7
N10 C14 C13 121.4 119.9
N10 C14 C15 119.7 119.9
N10 CP1 HCP1 112.6 110.5
N10 CP1 HCP2 112.6 110.5
C12 C11 C16 119.5 119.8
C12 C11 C 121.9 120.1
C11 C12 C13 119.5 120.0
C11 C12 H12 120.3 120.0
C16 C11 C 118.1 120.1
C11 C16 C15 121.0 120.0
C11 C16 H16 119.9 120.0
C11 C O 119.8 120.0
C11 C N 120.8 120.1
C13 C12 H12 120.2 120.0
C12 C13 C14 121.1 120.0
C12 C13 H13 119.0 120.0
C14 C13 H13 119.9 120.0
C13 C14 C15 118.7 120.2
C14 C15 C16 120.0 120.0
C14 C15 H15 120.4 120.0
C16 C15 H15 119.6 119.9
C15 C16 H16 119.1 120.0
O C N 119.5 119.9
C N CA 121.4 120.0
C N HN 114.1 119.9
CA N HN 124.5 120.0
N CA CB 112.1 109.5
N CA CT 110.3 109.5
N CA HA 107.8 109.5
CB CA CT 111.4 109.5
CB CA HA 106.5 109.4
CA CB CG 114.0 109.5
CA CB HB1 110.6 109.5
CA CB HB2 110.6 109.5
CT CA HA 108.5 109.5
CA CT O1 118.2 120.0
CA CT O2 118.6 120.0
CG CB HB1 110.5 109.5
CG CB HB2 110.5 109.4
CB CG CD 113.7 109.5
CB CG HG1 110.7 109.5
CB CG HG2 110.7 109.4
HB1 CB HB2 99.7 109.5
CD CG HG1 110.7 109.5
CD CG HG2 110.6 109.5
CG CD OE1 118.7 120.0
CG CD OE2 118.8 120.1
HG1 CG HG2 99.6 109.5
OE1 CD OE2 122.5 120.0
CD OE2 HOE2 118.8 120.1
O1 CT O2 123.2 120.1
CT O2 HO2 118.6 120.0
HCP1 CP1 HCP2 97.8 110.7

Torsion Angles for TMF

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C8A N1 C2 HN1 125.2 179.4
C2 N1 C8A C4A 0.1 359.6
C2 N1 C8A N8 180.5 178.0
NA2 C2 N1 N3 181.4 180.3
N1 C2 NA2 HN21 180.0 179.6
N1 C2 NA2 HN22 54.8 359.5
N1 C2 N3 C4 0.0 0.5
C2 N1 C8A HN1 234.8 180.6
C8A N1 C2 NA2 181.2 179.9
C8A N1 C2 N3 359.8 359.6
C4 C4A C8A N1 0.1 1.2
N5 C4A C8A N1 188.0 182.5
C4A C8A N1 N8 179.6 181.6
C7 N8 C8A N1 190.3 162.7
C2 N1 HN1 C8A 131.2 179.4
HN1 N1 C2 NA2 56.0 0.5
HN1 N1 C2 N3 234.6 180.1
HN1 N1 C8A C4A 125.3 179.0
HN1 N1 C8A N8 305.7 357.4
NA2 C2 N1 C8A 181.2 179.9
NA2 C2 N1 HN1 56.0 0.5
N1 C2 NA2 N3 178.7 179.7
NA2 C2 N3 C4 178.7 180.2
HN21 NA2 C2 HN22 125.2 180.1
N3 C2 N1 C8A 359.8 359.6
N3 C2 N1 HN1 234.6 180.1
N1 C2 N3 NA2 181.4 180.3
N3 C2 NA2 HN21 1.3 359.9
N3 C2 NA2 HN22 236.1 179.8
C2 N3 C4 O4 180.0 180.4
C2 N3 C4 C4A 0.1 0.3
HN21 NA2 C2 N3 1.3 359.9
C2 NA2 HN21 HN22 234.8 179.9
HN22 NA2 C2 N3 236.1 179.8
C2 NA2 HN22 HN21 131.7 180.1
O4 C4 N3 C4A 179.9 180.1
N3 C4 C4A N5 171.6 177.4
N3 C4 C4A C8A 359.8 358.8
N3 C4 O4 C4A 180.1 179.9
O4 C4 C4A N5 351.7 357.4
O4 C4 C4A C8A 179.9 178.8
N1 C8A C4A C4 0.1 1.2
N3 C4 C4A O4 179.9 180.1
N5 C4A C4 C8A 171.7 178.6
C4 C4A N5 C6 187.2 210.2
C4 C4A N5 CP1 59.1 36.2
C4 C4A C8A N8 179.7 182.8
N1 C8A C4A N5 188.0 182.5
C4 C4A N5 C8A 188.4 181.3
N5 C4A C8A N8 7.6 4.0
C6 N5 C4A CP1 128.0 174.0
C4A N5 C6 C7 338.8 316.9
C4A N5 C6 C9 217.9 197.7
C4A N5 C6 H6 96.5 77.5
C4A N5 CP1 N10 164.1 141.3
C4A N5 CP1 HCP1 289.4 22.6
C4A N5 CP1 HCP2 38.8 259.8
C4A C8A N1 HN1 125.3 179.0
N1 C8A C4A N8 180.4 178.5
C4 C4A C8A N5 172.1 178.7
C8A C4A N5 C6 358.7 28.9
C8A C4A N5 CP1 230.7 214.9
C7 N8 C8A C4A 10.7 341.1
C6 N5 C4A C8A 358.7 28.9
C4A N5 C6 CP1 223.1 184.6
C6 N5 CP1 N10 28.7 326.7
C6 N5 CP1 HCP1 153.9 208.0
C6 N5 CP1 HCP2 263.4 85.2
C7 C6 N5 C9 120.9 119.2
C7 C6 N5 H6 242.3 239.4
N5 C6 C7 N8 35.5 28.3
N5 C6 C7 H7 215.6 208.3
C9 C6 N5 H6 121.4 120.2
N5 C6 C9 N10 340.2 11.9
N5 C6 C9 H91 105.4 130.7
N5 C6 C9 H92 214.9 253.1
CP1 N5 C4A C8A 230.7 214.9
C4A N5 CP1 C6 135.4 174.6
CP1 N5 C6 C7 115.7 132.4
CP1 N5 C6 C9 354.8 13.2
CP1 N5 C6 H6 233.4 252.9
C9 N10 CP1 N5 319.6 40.6
C14 N10 CP1 N5 93.3 152.9
N10 CP1 N5 HCP1 234.7 118.7
N10 CP1 N5 HCP2 125.3 241.5
HCP1 CP1 N5 HCP2 250.5 122.8
C7 C6 N5 CP1 115.7 132.4
N5 C6 C7 C9 239.3 245.1
N5 C6 C7 H6 117.9 120.6
C9 C6 C7 H6 238.6 235.5
C7 C6 C9 N10 216.1 256.7
C7 C6 C9 H91 341.3 15.5
C7 C6 C9 H92 90.8 137.9
N8 C7 C6 H7 180.0 179.9
C6 C7 N8 C8A 327.2 360.0
C9 C6 N5 CP1 354.8 13.2
N5 C6 C9 C7 124.1 115.2
N5 C6 C9 H6 242.0 239.7
C7 C6 C9 H6 117.9 124.5
C9 C6 C7 N8 156.2 143.2
C9 C6 C7 H7 336.3 323.3
N10 C9 C6 H91 234.8 241.2
N10 C9 C6 H92 125.3 118.8
C6 C9 N10 C14 262.2 215.8
C6 C9 N10 CP1 35.5 328.1
H91 C9 C6 H92 250.5 237.6
H6 C6 N5 CP1 233.4 252.9
N5 C6 H6 C7 237.7 242.3
N5 C6 H6 C9 118.8 117.1
C7 C6 H6 C9 241.1 234.8
H6 C6 C7 N8 277.7 267.7
H6 C6 C7 H7 97.7 87.8
H6 C6 C9 N10 98.2 132.2
H6 C6 C9 H91 223.4 251.0
H6 C6 C9 H92 332.9 13.4
N1 C8A N8 C7 190.3 162.7
C4A C8A N8 C7 10.7 341.1
N8 C7 C6 C9 156.2 143.2
N8 C7 C6 H6 277.7 267.7
C6 C7 N8 H7 180.0 180.1
H7 C7 C6 C9 336.3 323.3
H7 C7 C6 H6 97.7 87.8
C6 C7 H7 N8 180.0 179.9
H7 C7 N8 C8A 147.1 179.9
N8 C8A N1 HN1 305.7 357.4
N1 C8A N8 C4A 179.6 181.6
C8A N8 C7 H7 147.1 179.9
N5 CP1 N10 C9 319.6 40.6
N10 C9 C6 H6 98.2 132.2
C6 C9 N10 H91 125.3 118.8
C6 C9 N10 H92 234.7 241.2
H91 C9 N10 H92 109.4 122.4
C14 N10 C9 CP1 226.7 247.7
C9 N10 C14 C13 149.6 233.8
C9 N10 C14 C15 325.2 53.5
C9 N10 CP1 HCP1 194.3 159.4
C9 N10 CP1 HCP2 84.9 282.3
H91 C9 C6 H6 223.4 251.0
C6 C9 H91 N10 238.6 244.7
C6 C9 H91 H92 119.3 122.4
N10 C9 H91 H92 240.7 237.7
H91 C9 N10 C14 136.9 97.0
H91 C9 N10 CP1 270.2 209.3
H92 C9 C6 H6 332.9 13.4
C6 C9 H92 N10 121.4 115.3
C6 C9 H92 H91 240.6 237.6
N10 C9 H92 H91 119.2 122.3
H92 C9 N10 C14 27.5 334.6
H92 C9 N10 CP1 160.8 86.9
N5 CP1 N10 C14 93.3 152.9
C14 N10 C9 H91 136.9 97.0
C14 N10 C9 H92 27.5 334.6
C9 N10 C14 CP1 124.0 110.0
C14 N10 CP1 HCP1 328.1 271.8
C14 N10 CP1 HCP2 218.6 34.6
C12 C13 C14 N10 172.0 180.0
N10 C14 C13 H13 352.0 360.0
C13 C14 N10 C15 184.4 180.3
N10 C14 C15 C16 187.9 179.7
N10 C14 C15 H15 7.9 0.3
N5 CP1 N10 HCP1 125.3 241.2
N5 CP1 N10 HCP2 234.7 118.3
CP1 N10 C9 H91 270.2 209.3
CP1 N10 C9 H92 160.8 86.9
C9 N10 CP1 C14 226.3 247.7
CP1 N10 C14 C13 25.6 123.8
CP1 N10 C14 C15 201.3 303.6
HCP1 CP1 N10 HCP2 109.4 237.1
C16 C11 C12 C 171.6 180.0
C12 C11 C16 C15 356.1 359.7
C12 C11 C16 H16 176.1 180.0
C12 C11 C O 152.6 360.0
C12 C11 C N 333.2 180.0
C13 C12 C11 H12 180.0 179.9
C11 C12 C13 C14 360.0 0.0
C11 C12 C13 H13 179.9 180.0
C12 C11 C16 C 188.1 180.0
C16 C11 C12 C13 3.8 360.0
C16 C11 C12 H12 183.8 180.1
C16 C11 C O 341.0 179.9
C16 C11 C N 161.5 360.0
C14 C15 C16 C11 0.1 0.6
C11 C16 C15 H15 180.2 180.0
C15 C16 C11 H16 180.0 179.7
C12 C11 C C16 171.7 180.0
C C11 C12 C13 192.3 180.0
C C11 C12 H12 12.2 0.0
C C11 C16 C15 168.0 179.7
C C11 C16 H16 348.0 0.0
O C C11 N 179.4 180.0
C11 C N CA 192.3 180.0
C11 C N HN 12.4 360.0
N10 C14 C13 C12 172.0 180.0
C13 C12 C11 C16 3.8 360.0
C13 C12 C11 C 192.3 180.0
C11 C12 C13 H12 180.0 180.1
C14 C13 C12 H13 180.0 180.0
C12 C13 C14 C15 356.3 0.3
H12 C12 C11 C16 183.8 180.1
H12 C12 C11 C 12.2 0.0
C11 C12 H12 C13 180.0 179.9
H12 C12 C13 C14 180.0 180.0
H12 C12 C13 H13 359.9 360.0
C13 C14 N10 CP1 25.6 123.8
N10 C14 C13 C15 175.7 179.7
C14 C13 C12 H12 180.0 180.0
C12 C13 C14 H13 180.0 180.0
C13 C14 C15 C16 3.6 359.5
C13 C14 C15 H15 183.6 180.0
H13 C13 C12 H12 359.9 360.0
C12 C13 H13 C14 180.0 180.0
H13 C13 C14 C15 176.3 180.2
C15 C14 N10 CP1 201.3 303.6
N10 C14 C15 C13 184.3 180.3
C11 C16 C15 C14 0.1 0.6
C15 C14 C13 H13 176.3 180.2
C16 C15 C14 H15 180.0 179.5
C14 C15 C16 H16 180.1 180.3
C15 C16 C11 C 168.0 179.7
C11 C16 C15 H16 180.0 180.3
C14 C15 C16 H15 180.0 180.5
C14 C15 H15 C16 180.0 179.5
H15 C15 C16 H16 0.1 359.7
H16 C16 C11 C 348.0 0.0
C11 C16 H16 C15 180.0 179.7
H16 C16 C15 H15 0.1 359.7
C11 C O N 180.6 180.0
O C N CA 12.9 0.0
O C N HN 192.9 180.0
C11 C N O 179.4 180.0
CA N C HN 179.9 180.0
C N CA CB 283.9 210.0
C N CA CT 159.2 90.0
C N CA HA 40.9 330.0
C N CA HN 180.1 180.0
CB CA N CT 124.7 120.0
CB CA N HA 243.1 240.0
N CA CB CG 157.7 59.9
N CA CB HB1 282.9 180.0
N CA CB HB2 32.4 300.0
CT CA N HA 118.3 120.0
N CA CT O1 9.8 210.0
N CA CT O2 191.9 30.0
C N HN CA 179.9 180.0
HN N CA CB 103.9 30.0
HN N CA CT 339.1 270.0
HN N CA HA 220.8 150.0
CB CA N HN 103.9 30.0
N CA CB CT 235.9 240.0
N CA CB HA 117.7 120.0
CT CA CB HA 241.8 240.0
CB CA CT O1 244.7 90.0
CB CA CT O2 66.8 269.9
CG CB CA HB1 234.8 239.9
CG CB CA HB2 125.3 119.9
CA CB CG CD 187.6 180.0
CA CB CG HG1 312.9 300.0
CA CB CG HG2 62.4 60.0
HB1 CB CA HB2 250.5 240.0
CT CA N HN 339.1 270.0
N CA CT CB 125.1 120.0
N CA CT HA 242.1 240.0
CB CA CT HA 117.0 119.9
CT CA CB CG 281.8 180.0
CT CA CB HB1 47.1 300.0
CT CA CB HB2 156.5 60.0
O1 CT CA O2 177.9 180.0
CA CT O2 HO2 180.0 180.0
HA CA N HN 220.8 150.0
N CA HA CB 239.5 240.0
N CA HA CT 119.4 120.0
CB CA HA CT 239.9 240.0
HA CA CB CG 40.0 299.9
HA CA CB HB1 165.2 60.0
HA CA CB HB2 274.7 180.0
HA CA CT O1 127.7 330.0
HA CA CT O2 309.8 150.0
CG CB CA CT 281.8 180.0
CG CB CA HA 40.0 299.9
CA CB CG HB1 125.3 120.0
CA CB CG HB2 234.7 240.0
HB1 CB CG HB2 109.4 120.0
CD CG CB HG1 234.7 239.9
CD CG CB HG2 125.2 120.0
CB CG CD OE1 100.8 0.1
CB CG CD OE2 279.1 180.0
HG1 CG CB HG2 250.5 240.0
HB1 CB CA CT 47.1 300.0
HB1 CB CA HA 165.2 60.0
CA CB HB1 CG 232.8 240.0
CA CB HB1 HB2 116.4 120.0
CG CB HB1 HB2 243.6 240.1
HB1 CB CG CD 62.3 59.9
HB1 CB CG HG1 187.6 180.0
HB1 CB CG HG2 297.1 300.0
HB2 CB CA CT 156.5 60.0
HB2 CB CA HA 274.7 180.0
CA CB HB2 CG 127.2 120.0
CA CB HB2 HB1 243.6 240.0
CG CB HB2 HB1 116.3 120.0
HB2 CB CG CD 312.9 300.0
HB2 CB CG HG1 78.2 60.0
HB2 CB CG HG2 187.7 180.0
CD CG CB HB1 62.3 59.9
CD CG CB HB2 312.9 300.0
CB CG CD HG1 125.3 120.1
CB CG CD HG2 234.8 240.1
HG1 CG CD HG2 109.5 120.0
OE1 CD CG OE2 181.7 180.1
CG CD OE2 HOE2 180.0 180.0
HG1 CG CB HB1 187.6 180.0
HG1 CG CB HB2 78.2 60.0
CB CG HG1 CD 233.0 239.9
CB CG HG1 HG2 116.6 119.9
CD CG HG1 HG2 243.5 240.0
HG1 CG CD OE1 335.6 240.0
HG1 CG CD OE2 153.8 59.9
HG2 CG CB HB1 297.1 300.0
HG2 CG CB HB2 187.7 180.0
CB CG HG2 CD 126.9 120.0
CB CG HG2 HG1 243.4 240.0
CD CG HG2 HG1 116.5 120.0
HG2 CG CD OE1 226.1 120.0
HG2 CG CD OE2 44.4 299.9
OE1 CD CG HG1 335.6 240.0
OE1 CD CG HG2 226.1 120.0
CG CD OE1 OE2 178.2 179.9
OE1 CD OE2 HOE2 358.3 359.9
OE2 CD CG HG1 153.8 59.9
OE2 CD CG HG2 44.4 299.9
CG CD OE2 OE1 181.8 180.1
O1 CT CA HA 127.7 330.0
CA CT O1 O2 182.2 180.0
O1 CT O2 HO2 2.2 360.0
O2 CT CA HA 309.8 150.0
CA CT O2 O1 177.8 180.0
N5 CP1 HCP1 N10 237.0 114.7
N5 CP1 HCP1 HCP2 118.5 237.5
N10 CP1 HCP1 HCP2 241.5 122.8
N5 CP1 HCP2 N10 123.0 245.6
N5 CP1 HCP2 HCP1 241.5 122.8
N10 CP1 HCP2 HCP1 118.5 237.2