PDB Chemical Component TM2

Ideal Model

Chemical Description

Name 5-{[(2-sulfoethyl)amino]methyl}uridine 5'-(dihydrogen phosphate)
Formula C12 H20 N3 O12 P S
Formal charge 0
Molecular weight 461.339 g/mol
Component type non-polymer

Chemical features

Atom count 49
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms O3P
Bond count 50
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-{[(2-sulfoethyl)amino]methyl}uridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) 2-[[1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]-2,4-dioxo-pyrimidin-5-yl]methylamino]ethanesulfonic acid

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(CNCC[S](O)(=O)=O)C(=O)NC2=O
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=C(CNCC[S](O)(=O)=O)C(=O)NC2=O
Stereo SMILES (OpenEye) C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)CNCCS(=O)(=O)O
InChI descriptor InChI=1S/C12H20N3O12PS/c16-8-7(5-26-28(20,21)22)27-11(9(8)17)15-4-6(10(18)14-12(15)19)3-13-1-2-29(23,24)25/h4,7-9,11,13,16-17H,1-3,5H2,(H,14,18,19)(H2,20,21,22)(H,23,24,25)/t7-,8-,9-,11-/m1/s1
InChIKey descriptor PZGIUONZFMAONE-TURQNECASA-N

Status Information

Last modified 2011-06-04
Created 2008-03-14
Release status REL
Model PDB code 2VQF
Processing site EBI