PDB Chemical Component TLX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TLX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.338 1.475
N1 C9 1.362 1.455
N1 C1' 1.347 1.468
C2 C3 1.519 1.528
C2 H21 1.115 1.089
C2 H22 1.114 1.089
C3 C4 1.525 1.537
C3 H31 1.116 1.089
C3 H32 1.115 1.090
C4 N5 1.327 1.460
C4 H41 1.116 1.090
C4 H42 1.115 1.089
N5 C6 1.323 1.467
N5 C9 1.334 1.486
C6 C7 1.522 1.548
C6 H61 1.116 1.090
C6 H62 1.115 1.090
C7 C8 1.545 1.554
C7 H71 1.116 1.090
C7 H72 1.115 1.089
C8 C9 1.534 1.537
C8 H81 1.115 1.090
C8 H82 1.115 1.089
C9 H9 1.115 1.090
C1' C2' 1.538 1.529
C1' H1'1 1.115 1.090
C1' H1'2 1.114 1.090
C2' C3' 1.544 1.529
C2' N' 1.345 1.469
C2' H2' 1.115 1.089
C3' C4' 1.544 1.530
C3' H3'1 1.115 1.090
C3' H3'2 1.114 1.090
C4' C5' 1.540 1.530
C4' CM' 1.506 1.530
C4' H4' 1.114 1.089
C5' H5'1 1.114 1.090
C5' H5'2 1.115 1.090
C5' H5'3 1.115 1.089
CM' HM'1 1.114 1.090
CM' HM'2 1.116 1.089
CM' HM'3 1.115 1.090
N' HN'1 1.020 1.009
N' HN'2 1.020 1.009

Bond Angles for TLX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C9 118.2 105.1
C2 N1 C1' 116.1 106.7
N1 C2 C3 111.8 110.9
N1 C2 H21 111.3 109.2
N1 C2 H22 111.4 109.2
C9 N1 C1' 120.4 106.8
N1 C9 N5 117.7 108.4
N1 C9 C8 119.1 114.6
N1 C9 H9 94.5 110.6
N1 C1' C2' 110.5 109.5
N1 C1' H1'1 111.8 109.4
N1 C1' H1'2 111.8 109.5
C3 C2 H21 111.3 109.1
C3 C2 H22 111.3 109.2
C2 C3 C4 110.5 110.7
C2 C3 H31 111.8 109.3
C2 C3 H32 111.9 109.2
H21 C2 H22 99.0 109.1
C4 C3 H31 111.8 109.3
C4 C3 H32 111.8 109.2
C3 C4 N5 110.5 107.4
C3 C4 H41 111.8 109.9
C3 C4 H42 111.8 109.9
H31 C3 H32 98.6 109.2
N5 C4 H41 111.8 109.8
N5 C4 H42 111.8 109.9
C4 N5 C6 120.1 111.9
C4 N5 C9 120.5 104.5
H41 C4 H42 98.6 109.9
C6 N5 C9 113.8 104.8
N5 C6 C7 105.1 106.0
N5 C6 H61 113.9 110.2
N5 C6 H62 113.9 110.2
N5 C9 C8 111.0 102.4
N5 C9 H9 106.6 110.3
C7 C6 H61 113.8 110.2
C7 C6 H62 113.9 110.1
C6 C7 C8 108.4 104.9
C6 C7 H71 112.6 110.3
C6 C7 H72 112.6 110.4
H61 C6 H62 96.6 110.1
C8 C7 H71 112.6 110.3
C8 C7 H72 112.6 110.4
C7 C8 C9 95.8 101.9
C7 C8 H81 117.5 111.0
C7 C8 H82 117.6 110.9
H71 C7 H72 97.8 110.4
C9 C8 H81 117.6 111.0
C9 C8 H82 117.6 110.9
C8 C9 H9 104.6 110.2
H81 C8 H82 92.7 110.9
C2' C1' H1'1 111.8 109.5
C2' C1' H1'2 111.8 109.5
C1' C2' C3' 117.4 109.6
C1' C2' N' 109.2 109.5
C1' C2' H2' 107.0 109.5
H1'1 C1' H1'2 98.6 109.5
C3' C2' N' 116.7 109.4
C3' C2' H2' 97.1 109.4
C2' C3' C4' 114.7 109.6
C2' C3' H3'1 110.3 109.5
C2' C3' H3'2 110.3 109.5
N' C2' H2' 107.8 109.4
C2' N' HN'1 109.2 106.6
C2' N' HN'2 112.4 106.7
C4' C3' H3'1 110.3 109.5
C4' C3' H3'2 110.3 109.4
C3' C4' C5' 115.6 109.5
C3' C4' CM' 117.7 109.4
C3' C4' H4' 99.7 109.5
H3'1 C3' H3'2 99.9 109.4
C5' C4' CM' 114.8 109.4
C5' C4' H4' 104.3 109.5
C4' C5' H5'1 115.5 109.5
C4' C5' H5'2 110.0 109.4
C4' C5' H5'3 110.0 109.5
CM' C4' H4' 101.0 109.5
C4' CM' HM'1 117.8 109.5
C4' CM' HM'2 109.2 109.5
C4' CM' HM'3 109.2 109.4
H5'1 C5' H5'2 110.0 109.5
H5'1 C5' H5'3 110.0 109.5
H5'2 C5' H5'3 100.2 109.5
HM'1 CM' HM'2 109.2 109.5
HM'1 CM' HM'3 109.2 109.4
HM'2 CM' HM'3 100.8 109.5
HN'1 N' HN'2 112.2 106.8

Torsion Angles for TLX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C9 N1 C2 C1' 154.1 113.1
C2 N1 C9 N5 39.2 70.9
C2 N1 C9 C8 178.2 184.6
C2 N1 C9 H9 287.7 309.8
C2 N1 C1' C2' 50.2 292.0
C2 N1 C1' H1'1 175.5 172.1
C2 N1 C1' H1'2 285.0 52.1
C3 C2 N1 H21 234.8 239.7
C3 C2 N1 H22 125.2 120.5
N1 C2 C3 C4 313.7 52.4
N1 C2 C3 H31 79.0 172.8
N1 C2 C3 H32 188.4 292.1
H21 C2 N1 H22 250.5 240.7
C2 N1 C9 C1' 207.0 246.9
C9 N1 C2 C3 5.6 301.7
C9 N1 C2 H21 130.8 61.9
C9 N1 C2 H22 240.3 181.2
C9 N1 C1' C2' 256.7 180.1
C9 N1 C1' H1'1 21.9 60.1
C9 N1 C1' H1'2 131.5 300.2
C4 N5 C9 N1 319.8 284.1
C6 N5 C9 N1 166.0 166.3
N5 C9 N1 C8 220.9 246.3
N5 C9 N1 H9 111.5 121.1
C7 C8 C9 N1 194.3 202.4
N1 C9 C8 H81 69.1 84.2
N1 C9 C8 H82 319.6 320.5
C8 C9 N1 H9 250.6 234.7
C2 N1 C1' C9 153.5 111.9
C1' N1 C2 C3 211.4 188.6
C1' N1 C2 H21 336.7 308.8
C1' N1 C2 H22 86.2 68.1
C1' N1 C9 N5 192.2 184.0
C1' N1 C9 C8 331.2 297.6
C1' N1 C9 H9 80.7 62.9
C2' C1' N1 H1'1 234.8 120.0
C2' C1' N1 H1'2 125.3 239.9
N1 C1' C2' C3' 190.8 187.2
N1 C1' C2' N' 55.0 67.1
N1 C1' C2' H2' 298.5 307.2
H1'1 C1' N1 H1'2 250.5 120.0
C3 C2 N1 C9 5.6 301.7
C3 C2 N1 C1' 211.4 188.6
N1 C2 C3 H21 125.2 120.3
N1 C2 C3 H22 234.7 239.5
H21 C2 C3 H22 109.5 119.2
C4 C3 C2 H31 234.8 239.6
C4 C3 C2 H32 125.3 120.3
C2 C3 C4 N5 45.6 304.7
C2 C3 C4 H41 170.8 64.1
C2 C3 C4 H42 280.3 185.1
H31 C3 C2 H32 250.5 240.7
H21 C2 N1 C9 130.8 61.9
H21 C2 N1 C1' 336.7 308.8
N1 C2 H21 C3 234.5 238.6
N1 C2 H21 H22 117.3 119.3
C3 C2 H21 H22 242.8 240.7
H21 C2 C3 C4 188.5 292.1
H21 C2 C3 H31 313.7 52.5
H21 C2 C3 H32 63.2 171.8
H22 C2 N1 C9 240.3 181.2
H22 C2 N1 C1' 86.2 68.1
N1 C2 H22 C3 125.5 121.5
N1 C2 H22 H21 242.8 240.7
C3 C2 H22 H21 117.2 119.2
H22 C2 C3 C4 79.0 172.8
H22 C2 C3 H31 204.2 293.2
H22 C2 C3 H32 313.7 52.6
C4 C3 C2 H21 188.5 292.1
C4 C3 C2 H22 79.0 172.8
C2 C3 C4 H31 125.2 120.4
C2 C3 C4 H32 234.7 239.7
H31 C3 C4 H32 109.4 119.4
N5 C4 C3 H41 234.8 240.6
N5 C4 C3 H42 125.3 119.6
C3 C4 N5 C6 147.9 177.5
C3 C4 N5 C9 355.8 64.6
H41 C4 C3 H42 250.5 239.0
H31 C3 C2 H21 313.7 52.5
H31 C3 C2 H22 204.2 293.2
C2 C3 H31 C4 235.5 238.8
C2 C3 H31 H32 117.8 119.4
C4 C3 H31 H32 242.3 240.6
H31 C3 C4 N5 280.4 184.3
H31 C3 C4 H41 45.6 303.7
H31 C3 C4 H42 155.1 64.7
H32 C3 C2 H21 63.2 171.8
H32 C3 C2 H22 313.7 52.6
C2 C3 H32 C4 124.6 121.1
C2 C3 H32 H31 242.3 240.6
C4 C3 H32 H31 117.7 119.4
H32 C3 C4 N5 170.9 64.9
H32 C3 C4 H41 296.2 184.3
H32 C3 C4 H42 45.6 305.4
N1 C9 N5 C4 319.8 284.1
N5 C4 C3 H31 280.4 184.3
N5 C4 C3 H32 170.9 64.9
C3 C4 N5 H41 125.2 119.4
C3 C4 N5 H42 234.7 240.5
H41 C4 N5 H42 109.5 121.0
C6 N5 C4 C9 152.1 112.9
C4 N5 C6 C7 195.7 216.8
C4 N5 C6 H61 320.9 336.0
C4 N5 C6 H62 70.4 97.7
C4 N5 C9 C8 177.6 162.7
C4 N5 C9 H9 64.3 45.4
H41 C4 C3 H31 45.6 303.7
H41 C4 C3 H32 296.2 184.3
C3 C4 H41 N5 235.5 242.1
C3 C4 H41 H42 117.7 121.0
N5 C4 H41 H42 242.3 238.9
H41 C4 N5 C6 22.6 58.1
H41 C4 N5 C9 230.5 305.2
H42 C4 C3 H31 155.1 64.7
H42 C4 C3 H32 45.6 305.4
C3 C4 H42 N5 124.6 118.0
C3 C4 H42 H41 242.3 239.0
N5 C4 H42 H41 117.7 121.0
H42 C4 N5 C6 273.1 297.1
H42 C4 N5 C9 121.0 184.2
N1 C9 N5 C6 166.0 166.3
C6 N5 C4 H41 22.6 58.1
C6 N5 C4 H42 273.1 297.1
C4 N5 C6 C9 206.1 247.3
C6 N5 C9 C8 23.8 44.8
C6 N5 C9 H9 270.5 287.6
C7 C6 N5 H61 234.7 240.8
C7 C6 N5 H62 125.3 119.1
N5 C6 C7 C8 353.7 4.4
N5 C6 C7 H71 119.0 123.2
N5 C6 C7 H72 228.4 245.5
H61 C6 N5 H62 250.5 238.3
N5 C9 N1 C1' 192.2 184.0
N1 C9 N5 C8 142.2 121.5
N1 C9 N5 H9 255.5 238.7
C9 N5 C4 H41 230.5 305.2
C9 N5 C4 H42 121.0 184.2
C4 N5 C9 C6 153.8 117.8
C9 N5 C6 C7 349.5 329.6
C9 N5 C6 H61 114.8 88.7
C9 N5 C6 H62 224.3 210.4
C7 C8 C9 N5 335.9 319.5
N5 C9 C8 H81 210.7 201.3
N5 C9 C8 H82 101.2 77.6
C8 C9 N5 H9 113.3 117.2
C7 C6 N5 C9 349.5 329.6
N5 C6 C7 H61 125.3 119.2
N5 C6 C7 H62 234.7 240.9
H61 C6 C7 H62 109.4 121.7
C8 C7 C6 H71 234.7 241.2
C8 C7 C6 H72 125.3 118.9
C6 C7 C8 C9 17.2 22.0
C6 C7 C8 H81 142.5 140.2
C6 C7 C8 H82 251.9 263.9
H71 C7 C6 H72 250.6 237.7
H61 C6 N5 C9 114.8 88.7
N5 C6 H61 C7 239.6 243.4
N5 C6 H61 H62 119.8 121.7
C7 C6 H61 H62 240.3 238.3
H61 C6 C7 C8 228.4 245.2
H61 C6 C7 H71 353.7 4.0
H61 C6 C7 H72 103.1 126.3
H62 C6 N5 C9 224.3 210.4
N5 C6 H62 C7 120.4 116.5
N5 C6 H62 H61 240.2 238.3
C7 C6 H62 H61 119.7 121.7
H62 C6 C7 C8 119.0 123.5
H62 C6 C7 H71 244.3 242.4
H62 C6 C7 H72 353.7 4.6
N1 C9 C8 C7 194.3 202.4
N5 C9 C8 C7 335.9 319.5
C8 C7 C6 H61 228.4 245.2
C8 C7 C6 H62 119.0 123.5
C6 C7 C8 H71 125.3 118.8
C6 C7 C8 H72 234.7 241.1
H71 C7 C8 H72 109.4 122.2
C9 C8 C7 H81 234.7 241.8
C9 C8 C7 H82 125.3 118.1
C7 C8 C9 H9 90.5 76.8
H81 C8 C7 H82 250.6 236.3
H71 C7 C6 H61 353.7 4.0
H71 C7 C6 H62 244.3 242.4
C6 C7 H71 C8 237.0 244.5
C6 C7 H71 H72 118.5 122.3
C8 C7 H71 H72 241.5 237.8
H71 C7 C8 C9 251.9 263.1
H71 C7 C8 H81 17.2 21.3
H71 C7 C8 H82 126.6 145.1
H72 C7 C6 H61 103.1 126.3
H72 C7 C6 H62 353.7 4.6
C6 C7 H72 C8 123.0 115.6
C6 C7 H72 H71 241.5 237.8
C8 C7 H72 H71 118.5 122.2
H72 C7 C8 C9 142.5 140.9
H72 C7 C8 H81 267.8 259.1
H72 C7 C8 H82 17.2 22.9
C8 C9 N1 C1' 331.2 297.6
N1 C9 C8 N5 218.4 242.8
N1 C9 C8 H9 103.7 125.5
N5 C9 C8 H9 245.4 242.7
C9 C8 C7 H71 251.9 263.1
C9 C8 C7 H72 142.5 140.9
C7 C8 C9 H81 125.2 118.2
C7 C8 C9 H82 234.7 241.9
H81 C8 C9 H82 109.5 123.7
H81 C8 C7 H71 17.2 21.3
H81 C8 C7 H72 267.8 259.1
C7 C8 H81 C9 246.4 247.5
C7 C8 H81 H82 123.2 123.8
C9 C8 H81 H82 236.8 236.3
H81 C8 C9 H9 325.3 318.6
H82 C8 C7 H71 126.6 145.1
H82 C8 C7 H72 17.2 22.9
C7 C8 H82 C9 113.7 112.4
C7 C8 H82 H81 236.9 236.2
C9 C8 H82 H81 123.2 123.8
H82 C8 C9 H9 215.8 194.9
H9 C9 N1 C1' 80.7 62.9
N1 C9 H9 N5 120.7 120.0
N1 C9 H9 C8 238.4 232.3
N5 C9 H9 C8 117.6 112.3
H9 C9 C8 H81 325.3 318.6
H9 C9 C8 H82 215.8 194.9
N1 C1' C2' H1'1 125.2 240.1
N1 C1' C2' H1'2 234.7 120.1
H1'1 C1' C2' H1'2 109.5 240.0
C3' C2' C1' N' 135.8 120.0
C3' C2' C1' H2' 252.2 240.0
C1' C2' C3' C4' 128.2 180.0
C1' C2' C3' H3'1 253.4 60.0
C1' C2' C3' H3'2 2.8 300.0
N' C2' C1' H2' 116.5 119.9
C1' C2' N' HN'1 180.0 66.6
C1' C2' N' HN'2 54.8 180.4
N1 C1' H1'1 C2' 235.5 120.0
N1 C1' H1'1 H1'2 117.8 240.0
C2' C1' H1'1 H1'2 242.2 120.0
H1'1 C1' C2' C3' 65.5 307.1
H1'1 C1' C2' N' 289.8 187.1
H1'1 C1' C2' H2' 173.3 67.1
N1 C1' H1'2 C2' 124.5 239.9
N1 C1' H1'2 H1'1 242.3 119.9
C2' C1' H1'2 H1'1 117.7 240.0
H1'2 C1' C2' C3' 316.0 67.1
H1'2 C1' C2' N' 180.3 307.1
H1'2 C1' C2' H2' 63.8 187.1
C3' C2' C1' H1'1 65.5 307.1
C3' C2' C1' H1'2 316.0 67.1
C1' C2' C3' N' 227.5 239.9
C1' C2' C3' H2' 113.4 120.1
N' C2' C3' H2' 245.9 240.1
C3' C2' N' HN'1 43.8 306.5
C3' C2' N' HN'2 278.6 60.3
C4' C3' C2' H3'1 234.7 120.0
C4' C3' C2' H3'2 125.3 240.0
C2' C3' C4' C5' 358.4 180.0
C2' C3' C4' CM' 139.3 300.0
C2' C3' C4' H4' 247.3 60.0
H3'1 C3' C2' H3'2 250.6 120.0
N' C2' C1' H1'1 289.8 187.1
N' C2' C1' H1'2 180.3 307.1
C1' C2' N' C3' 136.1 120.1
C1' C2' N' H2' 244.1 240.0
C3' C2' N' H2' 107.9 119.9
N' C2' C3' C4' 260.6 300.1
N' C2' C3' H3'1 25.9 180.0
N' C2' C3' H3'2 135.3 60.1
HN'1 N' C2' HN'2 125.2 246.2
H2' C2' C1' H1'1 173.3 67.1
H2' C2' C1' H1'2 63.8 187.1
C1' C2' H2' C3' 238.4 239.9
C1' C2' H2' N' 117.3 120.0
C3' C2' H2' N' 238.9 240.1
H2' C2' C3' C4' 14.7 59.9
H2' C2' C3' H3'1 140.0 299.9
H2' C2' C3' H3'2 249.4 180.0
H2' C2' N' HN'1 295.9 186.6
H2' C2' N' HN'2 170.7 300.4
C4' C3' C2' N' 260.6 300.1
C4' C3' C2' H2' 14.7 59.9
C2' C3' C4' H3'1 125.3 240.0
C2' C3' C4' H3'2 234.7 120.1
H3'1 C3' C4' H3'2 109.4 240.1
C5' C4' C3' CM' 219.0 240.0
C5' C4' C3' H4' 111.1 120.0
C3' C4' C5' H5'1 180.0 180.0
C3' C4' C5' H5'2 305.3 300.0
C3' C4' C5' H5'3 54.7 59.9
CM' C4' C3' H4' 252.0 240.0
C3' C4' CM' HM'1 180.0 299.9
C3' C4' CM' HM'2 305.2 60.0
C3' C4' CM' HM'3 54.7 180.0
H3'1 C3' C2' N' 25.9 180.0
H3'1 C3' C2' H2' 140.0 299.9
C2' C3' H3'1 C4' 232.2 120.1
C2' C3' H3'1 H3'2 116.1 240.0
C4' C3' H3'1 H3'2 243.9 119.9
H3'1 C3' C4' C5' 233.1 300.1
H3'1 C3' C4' CM' 14.1 60.1
H3'1 C3' C4' H4' 122.0 180.0
H3'2 C3' C2' N' 135.3 60.1
H3'2 C3' C2' H2' 249.4 180.0
C2' C3' H3'2 C4' 127.8 239.9
C2' C3' H3'2 H3'1 243.9 120.0
C4' C3' H3'2 H3'1 116.1 240.1
H3'2 C3' C4' C5' 123.7 60.0
H3'2 C3' C4' CM' 264.6 180.0
H3'2 C3' C4' H4' 12.6 300.0
C5' C4' C3' H3'1 233.1 300.1
C5' C4' C3' H3'2 123.7 60.0
C3' C4' C5' CM' 142.1 120.0
C3' C4' C5' H4' 251.6 239.9
CM' C4' C5' H4' 109.5 120.0
C5' C4' CM' HM'1 321.2 59.9
C5' C4' CM' HM'2 86.5 180.0
C5' C4' CM' HM'3 195.9 300.0
H5'1 C5' C4' H5'2 234.7 240.1
H5'1 C5' C4' H5'3 125.2 120.1
H5'2 C5' C4' H5'3 250.5 240.0
CM' C4' C3' H3'1 14.1 60.1
CM' C4' C3' H3'2 264.6 180.0
C3' C4' CM' C5' 218.7 240.0
C3' C4' CM' H4' 107.3 120.0
C5' C4' CM' H4' 248.5 240.0
CM' C4' C5' H5'1 37.9 60.1
CM' C4' C5' H5'2 163.2 180.0
CM' C4' C5' H5'3 272.6 300.0
HM'1 CM' C4' HM'2 234.7 240.0
HM'1 CM' C4' HM'3 125.3 119.9
HM'2 CM' C4' HM'3 250.6 239.9
H4' C4' C3' H3'1 122.0 180.0
H4' C4' C3' H3'2 12.6 300.0
C3' C4' H4' C5' 119.7 120.1
C3' C4' H4' CM' 239.0 240.0
C5' C4' H4' CM' 119.3 120.0
H4' C4' C5' H5'1 288.4 300.1
H4' C4' C5' H5'2 53.7 60.0
H4' C4' C5' H5'3 163.1 180.0
H4' C4' CM' HM'1 72.7 179.9
H4' C4' CM' HM'2 198.0 299.9
H4' C4' CM' HM'3 307.4 60.0
H5'1 C5' C4' CM' 37.9 60.1
H5'1 C5' C4' H4' 288.4 300.1
C4' C5' H5'1 H5'2 125.3 119.9
C4' C5' H5'1 H5'3 234.8 240.0
H5'2 C5' H5'1 H5'3 109.5 120.1
H5'2 C5' C4' CM' 163.2 180.0
H5'2 C5' C4' H4' 53.7 60.0
C4' C5' H5'2 H5'1 231.6 240.1
C4' C5' H5'2 H5'3 115.8 120.0
H5'1 C5' H5'2 H5'3 244.2 239.9
H5'3 C5' C4' CM' 272.6 300.0
H5'3 C5' C4' H4' 163.1 180.0
C4' C5' H5'3 H5'1 128.4 120.0
C4' C5' H5'3 H5'2 244.2 240.1
H5'1 C5' H5'3 H5'2 115.8 120.0
HM'1 CM' C4' H4' 72.7 179.9
C4' CM' HM'1 HM'2 125.3 120.0
C4' CM' HM'1 HM'3 234.7 240.1
HM'2 CM' HM'1 HM'3 109.4 120.0
HM'2 CM' C4' H4' 198.0 299.9
C4' CM' HM'2 HM'1 229.9 240.0
C4' CM' HM'2 HM'3 115.0 120.0
HM'1 CM' HM'2 HM'3 245.1 240.0
HM'3 CM' C4' H4' 307.4 60.0
C4' CM' HM'3 HM'1 130.1 119.9
C4' CM' HM'3 HM'2 245.0 239.9
HM'1 CM' HM'3 HM'2 114.9 120.0
HN'1 N' C2' H2' 295.9 186.6
C2' N' HN'1 HN'2 234.7 113.8
HN'2 N' C2' H2' 170.7 300.4
C2' N' HN'2 HN'1 123.5 246.3