PDB Chemical Component TLO

Ideal Model

Chemical Description

Name 5'-O-[(S)-hydroxy{[(S)-hydroxy(phenoxy)phosphoryl]oxy}phosphoryl]thymidine
Synonyms thymidine diphosphate phenol
Formula C16 H20 N2 O11 P2
Formal charge 0
Molecular weight 478.284 g/mol
Component type NON-POLYMER

Chemical features

Atom count 51
Chiral atom count 3
Chiral atoms C1' C3' C4'
Bond count 53
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-[(S)-hydroxy{[(S)-hydroxy(phenoxy)phosphoryl]oxy}phosphoryl]thymidine
Systematic name (OpenEye OEToolkits) [hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] phenyl hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)Oc3ccccc3)O2)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)Oc3ccccc3)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO[P@](=O)(O)O[P@@](=O)(O)Oc3ccccc3)O
InChI descriptor InChI=1S/C16H20N2O11P2/c1-10-8-18(16(21)17-15(10)20)14-7-12(19)13(27-14)9-26-30(22,23)29-31(24,25)28-11-5-3-2-4-6-11/h2-6,8,12-14,19H,7,9H2,1H3,(H,22,23)(H,24,25)(H,17,20,21)/t12-,13+,14+/m0/s1
InChIKey descriptor BANJVYKYIQPYKP-BFHYXJOUSA-N

Status Information

Last modified 2020-06-17
Created 2010-10-29
Release status REL
Model PDB code 3PFG
Processing site RCSB