PDB Chemical Component TLO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TLO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1' |
N1 |
1.465 |
1.465 |
| N1 |
C6 |
1.352 |
1.368 |
| N1 |
C2 |
1.350 |
1.345 |
| O2 |
C2 |
1.265 |
1.216 |
| C2 |
N3 |
1.363 |
1.346 |
| N3 |
C4 |
1.367 |
1.348 |
| N3 |
HN3 |
1.000 |
0.971 |
| C5 |
C4 |
1.406 |
1.416 |
| C4 |
O4 |
1.246 |
1.218 |
| C6 |
C5 |
1.387 |
1.351 |
| C5 |
C5M |
1.531 |
1.507 |
| C6 |
H6 |
1.080 |
1.080 |
| O3A |
PA |
1.609 |
1.610 |
| O2A |
PA |
1.515 |
1.481 |
| PA |
O5' |
1.598 |
1.610 |
| PA |
O1A |
1.518 |
1.610 |
| O3B |
PB |
1.599 |
1.610 |
| O2B |
PB |
1.523 |
1.480 |
| PB |
O1B |
1.480 |
1.610 |
| PB |
O3A |
1.617 |
1.609 |
| CD2 |
CG |
1.378 |
1.388 |
| CG |
O3B |
1.370 |
1.359 |
| CG |
CD1 |
1.401 |
1.387 |
| CE2 |
CZ |
1.388 |
1.382 |
| CZ |
CE1 |
1.389 |
1.384 |
| CZ |
HZ |
1.080 |
1.080 |
| C2' |
C1' |
1.546 |
1.546 |
| C1' |
O4' |
1.395 |
1.444 |
| C1' |
H1' |
1.100 |
1.090 |
| O1A |
HO1A |
0.950 |
0.967 |
| O1B |
HO1B |
0.950 |
0.968 |
| C3' |
C2' |
1.523 |
1.545 |
| C2' |
H2' |
1.100 |
1.090 |
| C2' |
H2'A |
1.100 |
1.090 |
| O3' |
C3' |
1.460 |
1.429 |
| C3' |
C4' |
1.497 |
1.545 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.949 |
0.968 |
| C5' |
C4' |
1.510 |
1.530 |
| C4' |
O4' |
1.432 |
1.444 |
| C4' |
H4' |
1.100 |
1.090 |
| O5' |
C5' |
1.455 |
1.428 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.089 |
| C5M |
H5M |
1.100 |
1.090 |
| C5M |
H5MA |
1.100 |
1.090 |
| C5M |
H5MB |
1.100 |
1.090 |
| CE1 |
CD1 |
1.385 |
1.381 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CE2 |
CD2 |
1.384 |
1.382 |
| CD2 |
HD2 |
1.080 |
1.080 |
| CE1 |
HE1 |
1.080 |
1.080 |
| CE2 |
HE2 |
1.080 |
1.080 |
Bond Angles for TLO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
120.5 |
120.6 |
| N1 |
C6 |
C5 |
120.9 |
119.7 |
| N1 |
C6 |
H6 |
119.5 |
120.2 |
| N1 |
C2 |
N3 |
121.4 |
120.9 |
| O2 |
C2 |
N3 |
117.6 |
119.6 |
| C2 |
N3 |
C4 |
118.7 |
120.3 |
| C2 |
N3 |
HN3 |
120.6 |
119.8 |
| C4 |
N3 |
HN3 |
120.7 |
119.9 |
| N3 |
C4 |
O4 |
114.9 |
120.3 |
| C6 |
C5 |
C5M |
124.6 |
120.5 |
| C5 |
C5M |
H5M |
109.5 |
109.5 |
| C5 |
C5M |
H5MA |
109.4 |
109.4 |
| C5 |
C5M |
H5MB |
109.4 |
109.5 |
| O3A |
PA |
O5' |
101.2 |
109.5 |
| O2A |
PA |
O5' |
107.8 |
109.4 |
| O1A |
PA |
O5' |
113.9 |
109.5 |
| PA |
O5' |
C5' |
119.4 |
123.0 |
| PA |
O1A |
HO1A |
109.5 |
114.0 |
| O2B |
PB |
O3A |
109.0 |
109.5 |
| O1B |
PB |
O3A |
104.8 |
109.5 |
| PB |
O1B |
HO1B |
109.5 |
114.0 |
| O3B |
CG |
CD1 |
118.8 |
120.1 |
| CG |
CD1 |
HD1 |
119.4 |
120.0 |
| CE2 |
CZ |
HZ |
119.4 |
120.0 |
| CE1 |
CZ |
HZ |
119.5 |
119.9 |
| CZ |
CE1 |
CD1 |
117.2 |
120.0 |
| CZ |
CE1 |
HE1 |
121.4 |
120.0 |
| C2' |
C1' |
O4' |
105.1 |
104.8 |
| C2' |
C1' |
H1' |
111.9 |
110.4 |
| O4' |
C1' |
H1' |
112.4 |
110.4 |
| C1' |
O4' |
C4' |
111.8 |
105.3 |
| C3' |
C2' |
H2' |
111.4 |
110.6 |
| C3' |
C2' |
H2'A |
111.4 |
110.6 |
| H2' |
C2' |
H2'A |
107.5 |
110.5 |
| O3' |
C3' |
C4' |
104.2 |
110.5 |
| O3' |
C3' |
H3' |
111.7 |
110.6 |
| C4' |
C3' |
H3' |
116.4 |
110.5 |
| C3' |
C4' |
O4' |
107.7 |
104.8 |
| C3' |
C4' |
H4' |
109.6 |
110.4 |
| C5' |
C4' |
H4' |
110.8 |
110.5 |
| O4' |
C4' |
H4' |
112.6 |
110.3 |
| O5' |
C5' |
H5' |
109.8 |
109.5 |
| O5' |
C5' |
H5'A |
109.8 |
109.5 |
| H5' |
C5' |
H5'A |
109.1 |
109.5 |
| H5M |
C5M |
H5MA |
109.4 |
109.5 |
| H5M |
C5M |
H5MB |
109.5 |
109.5 |
| H5MA |
C5M |
H5MB |
109.5 |
109.4 |
| CE1 |
CD1 |
HD1 |
119.4 |
120.0 |
| CE2 |
CD2 |
HD2 |
121.5 |
120.1 |
Torsion Angles for TLO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1' |
N1 |
C6 |
H6 |
355.9 |
0.2 |
| C6 |
N1 |
C2 |
N3 |
357.2 |
360.0 |
| N1 |
C6 |
C5 |
C5M |
177.6 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
2.7 |
0.0 |
| C2 |
N1 |
C6 |
H6 |
182.7 |
180.0 |
| O2 |
C2 |
N1 |
N3 |
181.6 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
2.1 |
0.0 |
| N1 |
C2 |
N3 |
HN3 |
182.1 |
180.0 |
| O2 |
C2 |
N1 |
C6 |
178.8 |
180.0 |
| N1 |
C2 |
O2 |
N3 |
178.4 |
180.0 |
| O2 |
C2 |
N3 |
C4 |
180.6 |
180.0 |
| O2 |
C2 |
N3 |
HN3 |
0.5 |
360.0 |
| N3 |
C2 |
N1 |
C6 |
357.2 |
360.0 |
| C4 |
N3 |
C2 |
HN3 |
180.0 |
180.0 |
| C2 |
N3 |
C4 |
O4 |
177.5 |
180.1 |
| C2 |
N3 |
C4 |
HN3 |
180.0 |
180.0 |
| C2 |
N3 |
HN3 |
C4 |
180.0 |
180.0 |
| HN3 |
N3 |
C4 |
O4 |
357.6 |
0.1 |
| N1 |
C6 |
C5 |
C4 |
358.1 |
0.0 |
| C5 |
C4 |
N3 |
HN3 |
178.6 |
180.0 |
| O4 |
C4 |
N3 |
HN3 |
357.6 |
0.1 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
| C6 |
C5 |
C5M |
H5M |
0.5 |
180.0 |
| C6 |
C5 |
C5M |
H5MA |
120.5 |
300.0 |
| C6 |
C5 |
C5M |
H5MB |
240.5 |
60.0 |
| H5M |
C5M |
C5 |
H5MA |
240.0 |
239.9 |
| H5M |
C5M |
C5 |
H5MB |
120.0 |
120.0 |
| H5MA |
C5M |
C5 |
H5MB |
240.0 |
240.1 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
180.1 |
| H6 |
C6 |
C5 |
C5M |
357.6 |
0.1 |
| O2A |
PA |
O3A |
O5' |
113.2 |
120.0 |
| O1A |
PA |
O3A |
O5' |
241.4 |
240.0 |
| O3A |
PA |
O5' |
C5' |
287.7 |
175.0 |
| O3A |
PA |
O1A |
HO1A |
238.5 |
60.0 |
| O3A |
PA |
O2A |
O5' |
251.2 |
240.0 |
| O1A |
PA |
O2A |
O5' |
131.6 |
120.0 |
| O2A |
PA |
O5' |
C5' |
173.9 |
55.0 |
| O2A |
PA |
O1A |
HO1A |
0.0 |
180.0 |
| O5' |
PA |
O1A |
HO1A |
128.9 |
300.0 |
| PA |
O5' |
C5' |
H5' |
40.4 |
60.0 |
| PA |
O5' |
C5' |
H5'A |
280.4 |
300.0 |
| O3A |
PA |
O1A |
O5' |
109.6 |
120.0 |
| O2A |
PA |
O1A |
O5' |
231.1 |
240.0 |
| O1A |
PA |
O5' |
C5' |
39.5 |
295.0 |
| O3B |
PB |
O1B |
HO1B |
127.0 |
300.0 |
| O1B |
PB |
O2B |
O3A |
241.0 |
240.0 |
| O2B |
PB |
O1B |
HO1B |
0.0 |
180.0 |
| O2B |
PB |
O1B |
O3A |
121.2 |
120.0 |
| PB |
O3A |
PA |
O5' |
288.8 |
200.0 |
| O3A |
PB |
O1B |
HO1B |
238.9 |
60.0 |
| CD2 |
CG |
CD1 |
HD1 |
180.4 |
180.2 |
| O3B |
CG |
CD1 |
HD1 |
0.5 |
359.9 |
| CZ |
CE1 |
CD1 |
CG |
359.1 |
0.0 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CE1 |
CZ |
CE2 |
HZ |
180.0 |
180.3 |
| CE2 |
CZ |
CE1 |
HE1 |
180.9 |
180.0 |
| CE2 |
CZ |
CE1 |
HZ |
180.0 |
179.7 |
| CZ |
CE1 |
CD1 |
HD1 |
179.1 |
180.1 |
| HZ |
CZ |
CE1 |
CD1 |
180.9 |
179.9 |
| HZ |
CZ |
CE1 |
HE1 |
0.9 |
0.3 |
| O4' |
C1' |
C2' |
H1' |
122.3 |
118.9 |
| C2' |
C1' |
O4' |
C4' |
347.6 |
319.5 |
| C2' |
C1' |
O4' |
H1' |
238.0 |
241.1 |
| C3' |
C4' |
O4' |
C1' |
353.0 |
40.5 |
| C1' |
O4' |
C4' |
H4' |
232.1 |
281.7 |
| C2' |
C1' |
H1' |
O4' |
118.1 |
115.4 |
| H1' |
C1' |
O4' |
C4' |
109.6 |
78.4 |
| HO1A |
O1A |
PA |
O5' |
128.9 |
300.0 |
| HO1B |
O1B |
PB |
O3A |
238.9 |
60.0 |
| C3' |
C2' |
C1' |
O4' |
26.5 |
23.9 |
| C3' |
C2' |
C1' |
H1' |
264.2 |
265.0 |
| H2' |
C2' |
C3' |
H2'A |
120.0 |
122.7 |
| H2' |
C2' |
C1' |
O4' |
146.5 |
142.6 |
| H2' |
C2' |
C1' |
H1' |
24.2 |
23.7 |
| C3' |
C2' |
H2' |
H2'A |
237.7 |
237.3 |
| H2'A |
C2' |
C1' |
O4' |
266.5 |
265.2 |
| H2'A |
C2' |
C1' |
H1' |
144.2 |
146.3 |
| C3' |
C2' |
H2'A |
H2' |
122.3 |
122.7 |
| O3' |
C3' |
C2' |
H2' |
319.9 |
360.0 |
| O3' |
C3' |
C2' |
H2'A |
199.9 |
237.3 |
| C4' |
C3' |
O3' |
H3' |
233.5 |
237.3 |
| O3' |
C3' |
C4' |
O4' |
270.9 |
217.4 |
| O3' |
C3' |
C4' |
H4' |
33.8 |
336.2 |
| C1' |
O4' |
C4' |
C3' |
353.0 |
40.5 |
| C4' |
C3' |
C2' |
H2' |
210.3 |
241.4 |
| C4' |
C3' |
C2' |
H2'A |
90.3 |
118.7 |
| O3' |
C3' |
C4' |
H3' |
123.5 |
122.7 |
| C5' |
C4' |
C3' |
H4' |
121.8 |
122.4 |
| O4' |
C4' |
C3' |
H4' |
237.2 |
241.2 |
| H3' |
C3' |
C2' |
H2' |
84.1 |
122.7 |
| H3' |
C3' |
C2' |
H2'A |
324.1 |
360.0 |
| O3' |
C3' |
H3' |
C4' |
240.5 |
237.3 |
| H3' |
C3' |
C4' |
O4' |
147.4 |
94.7 |
| H3' |
C3' |
C4' |
H4' |
270.3 |
213.5 |
| HO3' |
O3' |
C3' |
C4' |
288.4 |
176.1 |
| HO3' |
O3' |
C3' |
H3' |
54.9 |
298.8 |
| PA |
O5' |
C5' |
C4' |
160.4 |
180.0 |
| C5' |
C4' |
C3' |
H3' |
32.1 |
335.9 |
| C3' |
C4' |
C5' |
H4' |
238.9 |
237.7 |
| O4' |
C4' |
C5' |
H4' |
122.7 |
122.3 |
| C4' |
O4' |
C1' |
H1' |
109.6 |
78.4 |
| O4' |
C4' |
C3' |
H3' |
147.4 |
94.7 |
| C3' |
C4' |
O4' |
H4' |
120.9 |
118.8 |
| C5' |
C4' |
O4' |
H4' |
238.4 |
237.6 |
| H4' |
C4' |
C3' |
H3' |
270.3 |
213.5 |
| C3' |
C4' |
H4' |
O4' |
240.1 |
244.7 |
| O5' |
C5' |
C4' |
H4' |
46.9 |
307.3 |
| H5' |
C5' |
O5' |
H5'A |
120.0 |
120.0 |
| H5' |
C5' |
C4' |
H4' |
166.9 |
67.3 |
| O5' |
C5' |
H5' |
H5'A |
239.6 |
239.9 |
| H5'A |
C5' |
C4' |
H4' |
287.0 |
187.3 |
| O5' |
C5' |
H5'A |
H5' |
120.4 |
120.1 |
| C5 |
C5M |
H5M |
H5MA |
120.0 |
120.0 |
| C5 |
C5M |
H5M |
H5MB |
240.0 |
240.0 |
| H5MA |
C5M |
H5M |
H5MB |
120.0 |
120.0 |
| C5 |
C5M |
H5MA |
H5M |
240.0 |
240.0 |
| C5 |
C5M |
H5MA |
H5MB |
120.0 |
120.0 |
| H5M |
C5M |
H5MA |
H5MB |
240.0 |
240.0 |
| C5 |
C5M |
H5MB |
H5M |
120.0 |
120.0 |
| C5 |
C5M |
H5MB |
H5MA |
240.0 |
240.1 |
| H5M |
C5M |
H5MB |
H5MA |
120.0 |
120.0 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
HZ |
180.9 |
179.9 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.3 |
| CD2 |
CE2 |
CZ |
HZ |
179.4 |
180.0 |
| HE1 |
CE1 |
CZ |
HZ |
0.9 |
0.3 |
| CZ |
CE1 |
HE1 |
CD1 |
180.0 |
179.7 |
| HE1 |
CE1 |
CD1 |
HD1 |
359.1 |
359.7 |
| HE2 |
CE2 |
CZ |
HZ |
359.5 |
359.7 |
| HE2 |
CE2 |
CD2 |
HD2 |
0.1 |
0.3 |