PDB Chemical Component TLN

Ideal Model

Chemical Description

Name [(1R,3R,4R,7S)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE
Formula C11 H15 N2 O9 P
Formal charge 0
Molecular weight 350.219 g/mol
Component type RNA LINKING
Nonstandard Parent Id DU

Chemical features

Atom count 38
Chiral atom count 4
Chiral atoms C4' C1' C3' C2'
Observed leaving atoms OP3 HO3'
Bond count 40
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1-{2,5-anhydro-4-[(phosphonooxy)methyl]-alpha-L-lyxofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione
Systematic name (OpenEye OEToolkits) [(1R,4R,5R,7S)-7-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-3,6-dioxabicyclo[2.2.1]heptan-1-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@@H]2O[C@]3(CO[C@@H]2[C@@H]3O)CO[P](O)(O)=O)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2O[C]3(CO[CH]2[CH]3O)CO[P](O)(O)=O)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2[C@H]3[C@@H]([C@@](O2)(CO3)COP(=O)(O)O)O
InChI descriptor InChI=1S/C11H15N2O9P/c1-5-2-13(10(16)12-8(5)15)9-6-7(14)11(22-9,3-20-6)4-21-23(17,18)19/h2,6-7,9,14H,3-4H2,1H3,(H,12,15,16)(H2,17,18,19)/t6-,7+,9-,11-/m1/s1
InChIKey descriptor BXKGBLDLIZEIJX-YRCORFKGSA-N

Status Information

Last modified 2011-06-04
Created 2001-01-04
Release status REL
Model PDB code 1HHX
Processing site RCSB