PDB Chemical Component TLN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TLN

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.479 1.479
P OP2 1.481 1.610
P OP3 1.611 1.610
P O5' 1.607 1.610
OP2 HOP2 0.949 0.967
OP3 HOP3 0.949 0.967
O5' C5' 1.416 1.428
C5' C4' 1.529 1.529
C5' H5' 1.091 1.090
C5' H5'' 1.091 1.089
C4' O4' 1.425 1.456
C4' C3' 1.525 1.571
C4' C6' 1.535 1.561
O4' C1' 1.422 1.441
C1' N1 1.503 1.465
C1' C2' 1.529 1.560
C1' H1' 1.083 1.090
N1 C6 1.378 1.367
N1 C2 1.401 1.346
C6 C5 1.362 1.351
C6 H6 1.079 1.081
C5 C5M 1.525 1.507
C5 C4 1.458 1.415
C5M H71 1.092 1.090
C5M H72 1.090 1.090
C5M H73 1.090 1.091
C4 O4 1.230 1.217
C4 N3 1.388 1.348
N3 C2 1.397 1.345
N3 H3 1.016 0.970
C2 O2 1.230 1.216
C3' C2' 1.520 1.574
C3' O3' 1.418 1.428
C3' H3' 1.088 1.090
C2' O2' 1.426 1.456
C2' H2' 1.085 1.090
O2' C6' 1.426 1.441
O3' HO3' 0.950 0.967
C6' H6'1 1.091 1.089
C6' H6'2 1.090 1.090

Bond Angles for TLN

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 120.0 109.5
OP1 P OP3 108.1 109.4
OP1 P O5' 108.4 109.5
OP2 P OP3 108.3 109.4
OP2 P O5' 108.8 109.5
P OP2 HOP2 120.0 106.8
OP3 P O5' 101.6 109.5
P OP3 HOP3 108.2 106.8
P O5' C5' 122.4 106.8
O5' C5' C4' 107.8 109.5
O5' C5' H5' 110.5 109.4
O5' C5' H5'' 109.3 109.5
C4' C5' H5' 109.5 109.5
C4' C5' H5'' 110.0 109.5
C5' C4' O4' 111.4 116.3
C5' C4' C3' 114.5 117.4
C5' C4' C6' 117.0 116.4
H5' C5' H5'' 109.7 109.4
O4' C4' C3' 105.0 101.2
O4' C4' C6' 106.6 103.9
C4' O4' C1' 105.8 107.0
C3' C4' C6' 101.1 99.0
C4' C3' C2' 88.3 93.2
C4' C3' O3' 114.6 112.7
C4' C3' H3' 112.8 112.6
C4' C6' O2' 101.9 105.3
C4' C6' H6'1 111.3 110.3
C4' C6' H6'2 110.9 110.2
O4' C1' N1 112.4 110.3
O4' C1' C2' 101.6 105.4
O4' C1' H1' 109.1 110.3
N1 C1' C2' 115.2 110.3
N1 C1' H1' 112.0 110.2
C1' N1 C6 120.3 119.7
C1' N1 C2 119.5 119.7
C2' C1' H1' 105.8 110.2
C1' C2' C3' 102.9 98.9
C1' C2' O2' 106.4 103.9
C1' C2' H2' 113.0 117.2
C6 N1 C2 120.3 120.6
N1 C6 C5 122.7 119.7
N1 C6 H6 116.9 120.2
N1 C2 N3 116.4 121.0
N1 C2 O2 123.0 119.5
C5 C6 H6 120.4 120.1
C6 C5 C5M 120.0 120.4
C6 C5 C4 120.0 119.1
C5M C5 C4 120.0 120.4
C5 C5M H71 109.6 109.5
C5 C5M H72 111.4 109.5
C5 C5M H73 110.7 109.5
C5 C4 O4 126.2 120.3
C5 C4 N3 114.6 119.4
H71 C5M H72 108.2 109.4
H71 C5M H73 108.1 109.5
H72 C5M H73 108.8 109.4
O4 C4 N3 119.2 120.3
C4 N3 C2 125.9 120.3
C4 N3 H3 114.8 119.8
C2 N3 H3 119.1 119.9
N3 C2 O2 120.5 119.6
C2' C3' O3' 115.1 112.5
C2' C3' H3' 113.0 112.5
C3' C2' O2' 104.3 101.1
C3' C2' H2' 115.1 116.8
O3' C3' H3' 111.4 112.1
C3' O3' HO3' 114.6 106.9
O2' C2' H2' 114.0 116.2
C2' O2' C6' 105.3 107.0
O2' C6' H6'1 111.5 110.3
O2' C6' H6'2 109.9 110.3
H6'1 C6' H6'2 111.1 110.3

Torsion Angles for TLN

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 235.2 240.0
OP2 P OP1 O5' 125.8 120.0
OP1 P OP2 HOP2 180.0 180.0
OP3 P OP1 O5' 250.6 240.0
OP1 P OP3 HOP3 180.0 300.0
OP1 P O5' C5' 164.9 60.0
OP1 P OP2 OP3 124.7 120.0
OP1 P OP2 O5' 234.4 240.0
OP3 P OP2 O5' 109.6 120.0
OP2 P OP3 HOP3 311.5 60.0
OP2 P O5' C5' 32.8 299.9
OP1 P OP3 OP2 228.5 240.0
OP1 P OP3 O5' 114.0 120.0
OP2 P OP3 O5' 245.5 240.0
OP3 P OP2 HOP2 55.3 60.0
OP3 P O5' C5' 278.7 179.9
OP1 P O5' OP2 132.1 120.1
OP1 P O5' OP3 246.2 240.0
OP2 P O5' OP3 114.1 120.0
O5' P OP2 HOP2 305.6 300.0
O5' P OP3 HOP3 66.0 180.0
P O5' C5' C4' 167.0 180.0
P O5' C5' H5' 47.3 60.0
P O5' C5' H5'' 286.6 300.1
HOP2 OP2 P OP3 55.3 60.0
HOP2 OP2 P O5' 305.6 300.0
HOP3 OP3 P O5' 66.0 180.0
C4' C5' O5' H5' 119.7 120.0
C4' C5' O5' H5'' 240.4 239.9
O5' C5' C4' O4' 289.6 61.1
O5' C5' C4' C3' 48.5 181.1
O5' C5' C4' C6' 166.6 298.1
H5' C5' O5' H5'' 120.8 120.0
O5' C5' C4' H5' 239.7 240.0
O5' C5' C4' H5'' 119.1 120.1
H5' C5' C4' H5'' 239.4 240.1
O4' C4' C5' C3' 241.0 240.0
O4' C4' C5' C6' 123.0 123.0
C5' C4' O4' C1' 161.5 166.2
C3' C4' C5' C6' 242.0 242.9
C5' C4' C3' C2' 182.3 177.2
C5' C4' C3' O3' 65.3 61.2
C5' C4' C3' H3' 296.5 293.3
C5' C4' C6' O2' 196.5 201.1
C5' C4' C6' H6'1 77.7 320.0
C5' C4' C6' H6'2 313.5 82.1
O5' C5' H5' C4' 118.6 120.0
O5' C5' H5' H5'' 239.5 240.0
C4' C5' H5' H5'' 120.9 120.0
H5' C5' C4' O4' 49.9 181.1
H5' C5' C4' C3' 168.8 301.1
H5' C5' C4' C6' 286.8 58.1
O5' C5' H5'' C4' 241.8 239.9
O5' C5' H5'' H5' 121.3 120.0
C4' C5' H5'' H5' 239.4 240.0
H5'' C5' C4' O4' 170.5 301.0
H5'' C5' C4' C3' 289.5 61.0
H5'' C5' C4' C6' 47.5 178.0
O4' C4' C5' H5' 49.9 181.1
O4' C4' C5' H5'' 170.5 301.0
C5' C4' O4' C3' 124.5 128.4
C5' C4' O4' C6' 231.2 230.7
C3' C4' O4' C6' 106.7 102.3
O4' C4' C3' C2' 304.8 304.9
O4' C4' C3' O3' 187.8 188.8
O4' C4' C3' H3' 59.0 60.9
O4' C4' C6' O2' 71.1 71.8
O4' C4' C6' H6'1 312.2 190.8
O4' C4' C6' H6'2 188.1 312.9
C4' O4' C1' N1 236.4 237.7
C4' O4' C1' C2' 0.1 356.7
C4' O4' C1' H1' 111.5 115.7
C3' C4' C5' H5' 168.8 301.1
C3' C4' C5' H5'' 289.5 61.0
C5' C4' C3' O4' 237.5 232.3
C5' C4' C3' C6' 126.8 126.2
O4' C4' C3' C6' 249.3 253.8
C3' C4' O4' C1' 37.0 37.8
C3' C4' C6' O2' 321.6 327.9
C3' C4' C6' H6'1 202.8 86.9
C3' C4' C6' H6'2 78.6 208.9
C1' C2' C3' C4' 53.7 51.1
C2' C3' C4' O3' 116.9 116.1
C2' C3' C4' H3' 245.7 244.0
C4' C3' C2' O2' 302.8 304.9
C4' C3' C2' H2' 177.1 177.8
O3' C3' C4' H3' 128.8 127.9
C4' C3' O3' HO3' 180.0 165.2
C6' C4' C5' H5' 286.8 58.1
C6' C4' C5' H5'' 47.5 178.0
C5' C4' C6' O4' 125.4 129.2
C5' C4' C6' C3' 234.9 233.2
O4' C4' C6' C3' 109.5 104.0
C6' C4' O4' C1' 290.3 295.5
C6' C4' C3' C2' 55.5 51.1
C6' C4' C3' O3' 298.6 295.0
C6' C4' C3' H3' 169.8 167.1
C2' O2' C6' C4' 0.9 356.6
O2' C6' C4' H6'1 118.9 241.0
O2' C6' C4' H6'2 243.0 118.9
H6'1 C6' C4' H6'2 124.1 237.9
C1' O4' C4' C3' 37.0 37.8
C1' O4' C4' C6' 290.3 295.5
N1 C1' O4' C2' 236.3 241.0
N1 C1' O4' H1' 124.9 122.0
O4' C1' N1 C6 26.3 21.4
O4' C1' N1 C2 205.4 201.4
C2' C1' O4' H1' 248.6 241.0
O4' C1' C2' C3' 323.1 327.9
O4' C1' C2' O2' 72.5 71.8
O4' C1' C2' H2' 198.3 201.5
O4' C1' N1 C2' 115.7 116.0
O4' C1' N1 H1' 236.7 238.0
C2' C1' N1 H1' 121.0 122.0
N1 C1' C2' C3' 84.9 86.9
N1 C1' C2' O2' 194.2 190.7
N1 C1' C2' H2' 320.1 320.5
C6 N1 C1' C2 180.9 180.0
C1' N1 C6 C5 178.2 180.0
C1' N1 C6 H6 357.0 0.0
C1' N1 C2 N3 178.8 180.0
C1' N1 C2 O2 358.5 359.9
C4' C3' C2' C1' 53.7 51.1
O4' C1' C2' N1 238.3 241.0
O4' C1' C2' H1' 113.9 119.1
N1 C1' C2' H1' 235.7 238.1
C2' C1' N1 C6 270.5 265.4
C2' C1' N1 C2 89.7 85.4
C1' C2' C3' O3' 170.2 167.2
C1' C2' C3' H3' 299.6 295.0
C3' C2' C1' O2' 250.6 256.2
C3' C2' C1' H2' 124.8 126.4
O2' C2' C1' H2' 234.1 230.3
C1' C2' O2' C6' 289.1 295.6
O4' C1' H1' N1 125.1 122.0
O4' C1' H1' C2' 251.4 244.0
N1 C1' H1' C2' 126.3 122.0
H1' C1' N1 C6 149.5 143.5
H1' C1' N1 C2 328.7 323.5
H1' C1' C2' C3' 209.2 208.8
H1' C1' C2' O2' 318.5 312.7
H1' C1' C2' H2' 84.4 82.4
C6 N1 C1' C2' 270.5 265.4
C6 N1 C1' H1' 149.5 143.5
C1' N1 C6 C2 179.1 180.0
C6 N1 C2 N3 358.0 0.1
C6 N1 C2 O2 177.6 180.0
C5 C6 N1 H6 181.2 180.0
N1 C6 C5 C5M 183.7 180.0
N1 C6 C5 C4 3.2 0.2
C2 N1 C1' C2' 89.7 85.4
C2 N1 C1' H1' 328.7 323.5
C1' N1 C2 C6 180.9 180.0
C2 N1 C6 C5 359.1 0.0
C2 N1 C6 H6 177.9 180.0
C4 N3 C2 N1 2.9 359.7
N1 C2 N3 H3 178.2 180.0
N3 C2 N1 O2 180.3 180.1
C5 C6 N1 C2 359.1 0.0
N1 C6 C5 H6 178.7 180.0
C5M C5 C6 C4 180.6 179.8
C6 C5 C5M H71 107.3 180.0
C6 C5 C5M H72 347.5 300.0
C6 C5 C5M H73 226.3 59.9
C6 C5 C4 O4 176.8 180.0
C6 C5 C4 N3 357.7 359.5
H6 C6 N1 C2 177.9 180.0
N1 C6 H6 C5 181.2 180.0
H6 C6 C5 C5M 5.0 360.0
H6 C6 C5 C4 184.4 180.2
C5M C5 C6 H6 5.0 360.0
C6 C5 C5M C4 179.4 180.2
C5M C5 C4 O4 356.2 0.2
C5M C5 C4 N3 177.1 179.8
H71 C5M C5 H72 119.7 240.0
H71 C5M C5 H73 240.9 120.0
H72 C5M C5 H73 121.2 240.0
C4 C5 C6 H6 184.4 180.2
C6 C5 C4 C5M 180.6 179.8
C4 C5 C5M H71 287.8 359.8
C4 C5 C5M H72 168.1 119.7
C4 C5 C5M H73 46.9 239.7
O4 C4 C5 N3 179.0 180.5
C5 C4 N3 C2 359.2 0.5
C5 C4 N3 H3 183.8 180.2
H71 C5M C5 C4 287.8 359.8
C5 C5M H71 H72 238.4 120.0
C5 C5M H71 H73 120.7 240.0
H72 C5M H71 H73 242.4 119.9
H72 C5M C5 C4 168.1 119.7
C5 C5M H72 H71 120.5 240.0
C5 C5M H72 H73 237.7 120.0
H71 C5M H72 H73 117.2 240.0
H73 C5M C5 C4 46.9 239.7
C5 C5M H73 H71 240.0 120.0
C5 C5M H73 H72 122.7 240.0
H71 C5M H73 H72 242.7 119.9
C5 C4 O4 N3 181.0 179.5
O4 C4 N3 C2 180.1 180.1
O4 C4 N3 H3 4.6 359.7
N1 C2 N3 C4 2.9 359.7
C5 C4 N3 O4 179.1 180.5
C2 N3 C4 H3 175.5 180.3
C4 N3 C2 O2 183.2 179.8
N1 C2 N3 O2 179.7 179.9
C4 N3 C2 H3 184.7 179.7
C4 N3 H3 C2 175.8 180.3
H3 N3 C2 O2 358.5 0.1
N1 C2 O2 N3 180.3 180.1
O2 C2 N3 H3 358.5 0.1
C2' C3' C4' C6' 55.5 51.1
C4' C3' C2' O3' 243.5 243.8
C4' C3' C2' H3' 114.1 116.1
C3' C2' C1' H1' 209.2 208.8
C1' C2' C3' O2' 110.9 106.2
C1' C2' C3' H2' 236.6 233.3
O3' C3' C2' H3' 230.6 232.2
C2' C3' O3' HO3' 79.7 61.4
O2' C2' C3' H2' 125.7 127.1
C3' C2' O2' C6' 37.5 37.8
O3' C3' C4' C6' 298.6 295.0
C4' C3' O3' C2' 100.3 103.8
C4' C3' O3' H3' 230.5 231.8
C2' C3' O3' H3' 130.2 128.0
O3' C3' C2' O2' 59.3 61.1
O3' C3' C2' H2' 293.6 293.9
H3' C3' C4' C6' 169.8 167.1
C4' C3' H3' C2' 261.8 256.3
C4' C3' H3' O3' 130.5 128.2
C2' C3' H3' O3' 228.7 232.0
H3' C3' C2' O2' 188.7 188.8
H3' C3' C2' H2' 63.0 61.7
H3' C3' O3' HO3' 309.5 293.4
C4' C6' O2' C2' 0.9 356.6
O2' C2' C1' H1' 318.5 312.7
C1' C2' O2' C3' 251.6 257.8
C1' C2' O2' H2' 125.2 130.3
O2' C2' C3' O3' 59.3 61.1
O2' C2' C3' H3' 188.7 188.8
C3' C2' O2' H2' 233.6 232.5
C2' O2' C6' H6'1 119.7 237.6
C2' O2' C6' H6'2 243.3 115.5
H2' C2' C1' H1' 84.4 82.4
C1' C2' H2' C3' 117.9 117.1
C1' C2' H2' O2' 238.4 236.3
H2' C2' C3' O3' 293.6 293.9
H2' C2' C3' H3' 63.0 61.7
C3' C2' H2' O2' 120.5 119.3
H2' C2' O2' C6' 163.8 165.3
C4' C6' O2' H6'1 241.3 119.0
C4' C6' O2' H6'2 117.7 241.1
C6' O2' C2' H2' 163.8 165.3
H6'1 C6' O2' H6'2 236.4 122.0
HO3' O3' C3' H3' 309.5 293.4
C4' C6' H6'1 O2' 113.0 244.0
C4' C6' H6'1 H6'2 235.9 122.0
O2' C6' H6'1 H6'2 123.0 238.0
C4' C6' H6'2 O2' 248.1 115.9
C4' C6' H6'2 H6'1 124.3 237.9
O2' C6' H6'2 H6'1 236.2 122.0