PDB Chemical Component TLC

Ideal Model

Chemical Description

Name 2-O,3-ETHDIYL-ARABINOFURANOSYL-THYMINE-5'-MONOPHOSPHATE
Synonyms [3.3.0]BICYCLO-ARABINO-THYMINE-5'-PHOSPHATE
Formula C12 H17 N2 O9 P
Formal charge 0
Molecular weight 364.245 g/mol
Component type DNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 41
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms OP3 HO3'
Bond count 43
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) [(3aR,4R,6R,6aS)-3a-hydroxy-6-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)hexahydrofuro[3,4-b]furan-4-yl]methyl dihydrogen phosphate
Systematic name (OpenEye OEToolkits) [(3aR,4R,6R,6aS)-3a-hydroxy-6-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-3,4,6,6a-tetrahydro-2H-furo[4,3-b]furan-4-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@]3(O)CCO[C@H]23)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[C]3(O)CCO[CH]23)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]3[C@@](CCO3)([C@H](O2)COP(=O)(O)O)O
InChI descriptor InChI=1S/C12H17N2O9P/c1-6-4-14(11(16)13-9(6)15)10-8-12(17,2-3-21-8)7(23-10)5-22-24(18,19)20/h4,7-8,10,17H,2-3,5H2,1H3,(H,13,15,16)(H2,18,19,20)/t7-,8-,10-,12-/m1/s1
InChIKey descriptor GYCSZLSGLYHOGR-FWSPBBIJSA-N

Status Information

Last modified 2020-06-17
Created 2000-02-25
Release status REL
Model PDB code 1EI4
Processing site RCSB