PDB Chemical Component TLC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TLC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.473 1.479
P OP2 1.469 1.610
P OP3 1.606 1.609
P O5' 1.591 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.966
O5' C5' 1.428 1.429
C5' C4' 1.506 1.529
C5' H5' 1.114 1.091
C5' H5'' 1.115 1.089
C4' O4' 1.444 1.444
C4' C3' 1.532 1.542
C4' H4' 1.114 1.090
O4' C1' 1.396 1.443
C1' N1 1.468 1.465
C1' C2' 1.533 1.545
C1' H1' 1.115 1.091
N1 C6 1.385 1.368
N1 C2 1.382 1.345
C6 C5 1.337 1.350
C6 H6 1.103 1.080
C2 O2 1.212 1.216
C2 N3 1.378 1.345
N3 C4 1.390 1.347
N3 HN3 1.020 0.970
C4 O4 1.226 1.218
C4 C5 1.459 1.416
C5 C5M 1.501 1.508
C5M H71 1.115 1.090
C5M H72 1.115 1.090
C5M H73 1.114 1.090
C2' O2L 1.456 1.455
C2' C3' 1.547 1.555
C2' H2' 1.115 1.090
O2L C2L 1.456 1.442
C3L C2L 1.476 1.548
C3L C3' 1.582 1.546
C3L H3L1 1.114 1.090
C3L H3L2 1.115 1.091
C2L H2L1 1.115 1.091
C2L H2L2 1.116 1.090
C3' O3' 1.447 1.428
O3' HO3' 0.949 0.967

Bond Angles for TLC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.9 109.4
OP1 P OP3 99.4 109.5
OP1 P O5' 109.6 109.5
OP2 P OP3 115.2 109.4
OP2 P O5' 106.6 109.5
P OP2 HOP2 119.9 106.8
OP3 P O5' 105.2 109.5
P OP3 HOP3 99.5 106.9
P O5' C5' 120.8 106.8
O5' C5' C4' 110.3 109.5
O5' C5' H5' 111.9 109.4
O5' C5' H5'' 111.9 109.5
C4' C5' H5' 111.9 109.5
C4' C5' H5'' 111.9 109.5
C5' C4' O4' 111.3 110.3
C5' C4' C3' 121.0 110.5
C5' C4' H4' 98.3 110.3
H5' C5' H5'' 98.5 109.4
O4' C4' C3' 105.6 105.1
O4' C4' H4' 115.9 110.3
C4' O4' C1' 105.6 105.2
C3' C4' H4' 105.0 110.2
C4' C3' C2' 104.2 104.1
C4' C3' C3L 115.8 108.9
C4' C3' O3' 105.2 112.8
O4' C1' N1 108.3 110.4
O4' C1' C2' 105.9 104.9
O4' C1' H1' 115.4 110.4
N1 C1' C2' 116.9 110.4
N1 C1' H1' 104.1 110.3
C1' N1 C6 121.5 119.6
C1' N1 C2 116.9 119.7
C2' C1' H1' 106.6 110.3
C1' C2' O2L 111.8 108.5
C1' C2' C3' 102.5 103.6
C1' C2' H2' 111.1 113.1
C6 N1 C2 121.6 120.7
N1 C6 C5 123.2 119.6
N1 C6 H6 120.3 120.2
N1 C2 O2 122.2 119.5
N1 C2 N3 115.1 121.0
C5 C6 H6 116.5 120.2
C6 C5 C4 118.3 119.1
C6 C5 C5M 122.7 120.4
O2 C2 N3 122.7 119.5
C2 N3 C4 126.3 120.2
C2 N3 HN3 116.4 119.9
C4 N3 HN3 117.4 119.9
N3 C4 O4 119.9 120.3
N3 C4 C5 115.5 119.4
O4 C4 C5 124.6 120.3
C4 C5 C5M 119.0 120.4
C5 C5M H71 122.7 109.4
C5 C5M H72 107.5 109.5
C5 C5M H73 107.5 109.5
H71 C5M H72 107.5 109.4
H71 C5M H73 107.6 109.5
H72 C5M H73 102.3 109.5
O2L C2' C3' 105.1 105.9
O2L C2' H2' 108.8 112.0
C2' O2L C2L 105.9 107.4
C3' C2' H2' 117.3 113.1
C2' C3' C3L 104.8 104.7
C2' C3' O3' 117.1 112.9
O2L C2L C3L 106.8 103.5
O2L C2L H2L1 113.2 110.6
O2L C2L H2L2 113.2 110.6
C2L C3L C3' 97.1 102.2
C2L C3L H3L1 117.0 110.9
C2L C3L H3L2 116.9 110.9
C3L C2L H2L1 113.2 110.6
C3L C2L H2L2 113.2 110.7
C3' C3L H3L1 117.0 110.9
C3' C3L H3L2 117.0 110.8
C3L C3' O3' 110.1 112.7
H3L1 C3L H3L2 93.4 110.9
H2L1 C2L H2L2 97.2 110.6
C3' O3' HO3' 105.1 106.8

Torsion Angles for TLC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 126.4 120.0
OP2 P OP1 O5' 236.3 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 109.9 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 29.3 60.0
OP1 P OP2 OP3 241.3 240.0
OP1 P OP2 O5' 125.1 120.0
OP3 P OP2 O5' 243.8 240.0
OP2 P OP3 HOP3 50.5 60.0
OP2 P O5' C5' 160.5 180.0
OP1 P OP3 OP2 129.6 120.0
OP1 P OP3 O5' 246.6 239.9
OP2 P OP3 O5' 117.0 120.0
OP3 P OP2 HOP2 298.7 60.0
OP3 P O5' C5' 283.3 299.9
OP1 P O5' OP2 228.8 240.0
OP1 P O5' OP3 106.1 120.1
OP2 P O5' OP3 237.3 240.1
O5' P OP2 HOP2 54.9 180.0
O5' P OP3 HOP3 293.4 300.1
P O5' C5' C4' 171.0 180.0
P O5' C5' H5' 296.3 60.0
P O5' C5' H5'' 45.8 300.1
HOP2 OP2 P OP3 298.7 60.0
HOP2 OP2 P O5' 54.9 180.0
HOP3 OP3 P O5' 293.4 300.1
C4' C5' O5' H5' 234.7 120.0
C4' C5' O5' H5'' 125.2 239.9
O5' C5' C4' O4' 299.2 66.9
O5' C5' C4' C3' 64.1 182.7
O5' C5' C4' H4' 177.2 304.8
H5' C5' O5' H5'' 250.5 120.0
O5' C5' C4' H5' 125.3 240.1
O5' C5' C4' H5'' 234.8 120.1
H5' C5' C4' H5'' 109.5 240.0
O4' C4' C5' C3' 235.1 244.2
O4' C4' C5' H4' 122.1 122.1
C5' C4' O4' C1' 169.4 159.2
C3' C4' C5' H4' 246.9 237.9
C5' C4' C3' C2' 216.1 218.4
C5' C4' C3' C3L 330.6 329.6
C5' C4' C3' O3' 92.3 95.6
O5' C5' H5' C4' 235.6 120.0
O5' C5' H5' H5'' 117.8 240.0
C4' C5' H5' H5'' 242.2 120.0
H5' C5' C4' O4' 174.0 186.9
H5' C5' C4' C3' 298.8 302.6
H5' C5' C4' H4' 51.9 64.8
O5' C5' H5'' C4' 124.4 239.9
O5' C5' H5'' H5' 242.2 119.9
C4' C5' H5'' H5' 117.8 240.0
H5'' C5' C4' O4' 64.4 306.8
H5'' C5' C4' C3' 189.3 62.6
H5'' C5' C4' H4' 302.4 184.7
O4' C4' C5' H5' 174.0 186.9
O4' C4' C5' H5'' 64.4 306.8
C5' C4' O4' C3' 133.1 119.1
C5' C4' O4' H4' 248.8 237.9
C3' C4' O4' H4' 115.7 118.8
O4' C4' C3' C2' 343.6 337.3
O4' C4' C3' C3L 98.1 88.6
O4' C4' C3' O3' 219.8 214.6
C4' O4' C1' N1 192.3 199.9
C4' O4' C1' C2' 318.4 318.8
C4' O4' C1' H1' 76.1 77.7
C3' C4' C5' H5' 298.8 302.6
C3' C4' C5' H5'' 189.3 62.6
C5' C4' C3' O4' 232.5 241.0
C5' C4' C3' H4' 109.5 122.2
O4' C4' C3' H4' 237.0 241.1
C3' C4' O4' C1' 36.3 40.1
C1' C2' C3' C4' 352.8 358.4
O2L C2' C3' C4' 109.8 112.5
C4' C3' C2' H2' 230.8 235.6
C2' C3' C4' C3L 245.5 248.7
C2' C3' C4' O3' 123.8 122.7
C2L C3L C3' C4' 279.7 227.9
C4' C3' C3L H3L1 154.5 346.1
C4' C3' C3L H3L2 44.9 109.7
C3L C3' C4' O3' 238.3 234.0
C4' C3' O3' HO3' 180.0 299.1
H4' C4' C5' H5' 51.9 64.8
H4' C4' C5' H5'' 302.4 184.7
C5' C4' H4' O4' 118.6 122.1
C5' C4' H4' C3' 234.7 237.7
O4' C4' H4' C3' 116.1 115.6
H4' C4' O4' C1' 280.6 281.3
H4' C4' C3' C2' 106.6 96.2
H4' C4' C3' C3L 221.1 207.5
H4' C4' C3' O3' 342.8 333.5
C1' O4' C4' C3' 36.3 40.1
C1' O4' C4' H4' 280.6 281.3
N1 C1' O4' C2' 233.8 241.1
N1 C1' O4' H1' 116.2 122.3
O4' C1' N1 C6 49.1 24.5
O4' C1' N1 C2 231.0 204.6
C2' C1' O4' H1' 242.3 241.2
O4' C1' C2' O2L 277.5 273.1
O4' C1' C2' C3' 29.6 25.4
O4' C1' C2' H2' 155.7 148.2
O4' C1' N1 C2' 119.5 115.5
O4' C1' N1 H1' 236.7 237.7
C2' C1' N1 H1' 117.2 122.2
N1 C1' C2' O2L 38.2 32.1
N1 C1' C2' C3' 150.3 144.3
N1 C1' C2' H2' 276.4 267.1
C6 N1 C1' C2 178.2 179.9
C1' N1 C6 C5 183.8 180.0
C1' N1 C6 H6 3.8 0.0
C1' N1 C2 O2 357.0 360.0
C1' N1 C2 N3 176.6 180.0
C4' C3' C2' C1' 352.8 358.4
O4' C1' C2' N1 239.2 241.1
O4' C1' C2' H1' 123.4 118.9
N1 C1' C2' H1' 244.2 237.8
C2' C1' N1 C6 289.7 269.1
C2' C1' N1 C2 111.5 89.1
O2L C2' C1' C3' 247.9 247.7
O2L C2' C1' H2' 121.8 124.9
C1' C2' O2L C2L 95.2 137.3
C3' C2' C1' H2' 233.9 237.2
C1' C2' C3' C3L 230.8 244.1
C1' C2' C3' O3' 108.5 121.1
O4' C1' H1' N1 118.6 122.3
O4' C1' H1' C2' 242.7 244.5
N1 C1' H1' C2' 124.2 122.2
H1' C1' N1 C6 172.5 146.8
H1' C1' N1 C2 354.3 326.9
H1' C1' C2' O2L 154.1 154.3
H1' C1' C2' C3' 266.1 266.5
H1' C1' C2' H2' 32.2 29.3
C6 N1 C1' C2' 289.7 269.1
C6 N1 C1' H1' 172.5 146.8
C1' N1 C6 C2 181.9 180.1
C6 N1 C2 O2 178.8 180.0
C6 N1 C2 N3 358.5 0.0
C5 C6 N1 H6 180.1 180.0
N1 C6 C5 C4 359.3 0.3
N1 C6 C5 C5M 179.5 180.0
C2 N1 C1' C2' 111.5 89.1
C2 N1 C1' H1' 354.3 326.9
C1' N1 C2 C6 178.2 179.9
C2 N1 C6 C5 2.0 360.0
C2 N1 C6 H6 181.9 180.0
O2 C2 N1 N3 180.4 180.0
N1 C2 N3 C4 360.0 359.7
N1 C2 N3 HN3 180.0 180.0
C5 C6 N1 C2 2.0 360.0
N1 C6 C5 H6 179.9 180.0
N3 C4 C5 C6 359.2 359.5
O4 C4 C5 C6 178.3 180.0
C4 C5 C6 C5M 179.9 180.3
C6 C5 C5M H71 180.0 180.0
C6 C5 C5M H72 305.2 299.9
C6 C5 C5M H73 54.7 60.0
H6 C6 N1 C2 181.9 180.0
N1 C6 H6 C5 180.1 180.0
H6 C6 C5 C4 179.4 180.2
H6 C6 C5 C5M 359.5 360.0
N1 C2 O2 N3 179.6 180.0
O2 C2 N3 C4 179.6 179.7
O2 C2 N3 HN3 359.7 360.0
N1 C2 N3 O2 180.4 180.0
C4 N3 C2 HN3 179.9 179.7
C2 N3 C4 O4 182.0 180.0
C2 N3 C4 C5 1.2 0.5
C6 C5 C4 N3 359.2 359.5
C2 N3 C4 HN3 180.1 180.3
O4 C4 N3 C5 180.8 179.5
N3 C4 C5 C5M 179.1 179.8
C2 N3 HN3 C4 180.0 179.8
HN3 N3 C4 O4 1.9 359.8
HN3 N3 C4 C5 181.2 180.2
C6 C5 C4 O4 178.3 180.0
O4 C4 N3 HN3 1.9 359.8
N3 C4 O4 C5 179.1 180.5
O4 C4 C5 C5M 358.2 0.2
C4 C5 C6 H6 179.4 180.2
C6 C5 C4 C5M 180.1 179.7
C5 C4 N3 HN3 181.2 180.2
N3 C4 C5 O4 180.8 179.5
C4 C5 C5M H71 0.1 359.7
C4 C5 C5M H72 125.3 119.7
C4 C5 C5M H73 234.9 239.8
C5M C5 C6 H6 359.5 360.0
C6 C5 C5M C4 179.9 180.3
H71 C5M C5 H72 234.8 240.1
H71 C5M C5 H73 125.3 120.0
H72 C5M C5 H73 250.5 239.9
C5 C5M H71 H72 125.2 119.9
C5 C5M H71 H73 234.7 240.0
H72 C5M H71 H73 109.6 120.1
C5 C5M H72 H71 226.2 240.1
C5 C5M H72 H73 113.0 120.0
H71 C5M H72 H73 246.9 240.0
C5 C5M H73 H71 133.9 120.0
C5 C5M H73 H72 247.0 240.0
H71 C5M H73 H72 113.1 120.0
C4' C3' C2' O2L 109.8 112.5
O2L C2' C1' H1' 154.1 154.3
C1' C2' O2L C3' 110.4 110.7
C1' C2' O2L H2' 236.9 234.5
C3' C2' O2L H2' 126.4 123.8
O2L C2' C3' C3L 347.7 358.2
O2L C2' C3' O3' 225.5 235.2
C2' O2L C2L C3L 40.2 319.4
C2' O2L C2L H2L1 165.5 200.9
C2' O2L C2L H2L2 275.0 77.9
C2' C3' C4' H4' 106.6 96.2
C4' C3' C2' C3L 122.1 114.3
C4' C3' C2' O3' 244.3 237.3
C3' C2' C1' H1' 266.1 266.5
C1' C2' C3' O2L 243.0 245.9
C1' C2' C3' H2' 122.0 122.8
O2L C2' C3' H2' 239.0 236.9
C3' C2' O2L C2L 344.7 26.6
C2L C3L C3' C2' 33.9 338.8
C2' C3' C3L H3L1 268.6 97.0
C2' C3' C3L H3L2 159.1 220.6
C3L C3' C2' O3' 122.2 123.0
C2' C3' O3' HO3' 64.8 181.4
H2' C2' C1' H1' 32.2 29.3
C1' C2' H2' O2L 123.5 123.0
C1' C2' H2' C3' 242.6 242.6
O2L C2' H2' C3' 119.0 119.6
H2' C2' O2L C2L 218.3 262.8
H2' C2' C3' C3L 108.7 121.3
H2' C2' C3' O3' 346.5 358.3
C2L O2L C2' C3' 344.7 26.6
C2L O2L C2' H2' 218.3 262.8
O2L C2L C3L C3' 315.0 37.5
O2L C2L C3L H3L1 80.3 279.3
O2L C2L C3L H3L2 189.8 155.6
C3L C2L O2L H2L1 234.7 118.5
C3L C2L O2L H2L2 125.2 241.5
H2L1 C2L O2L H2L2 250.5 123.0
C4' C3' C3L C2L 279.7 227.9
C2' C3' C3L C2L 33.9 338.8
O2L C2L C3L H2L1 125.3 241.5
O2L C2L C3L H2L2 234.8 118.5
C3' C3L C2L H3L1 234.8 118.2
C3' C3L C2L H3L2 125.2 241.9
C2L C3L C3' O3' 160.6 101.8
H3L1 C3L C2L H3L2 250.5 123.7
H2L1 C2L C3L H2L2 109.5 237.1
C3L C3' C4' H4' 221.1 207.5
C4' C3' C3L C2' 245.9 249.1
C4' C3' C3L O3' 119.1 126.0
C3L C3' C2' H2' 108.7 121.3
C2' C3' C3L O3' 233.2 236.9
C2L C3L C3' H3L1 125.2 241.8
C2L C3L C3' H3L2 234.8 118.1
C3' C3L C2L H2L1 189.7 156.0
C3' C3L C2L H2L2 80.3 279.0
H3L1 C3L C3' H3L2 109.6 236.3
C3L C3' O3' HO3' 305.4 63.0
C2L C3L H3L1 C3' 245.4 112.8
C2L C3L H3L1 H3L2 122.7 236.3
H3L1 C3L C2L H2L1 315.0 37.8
H3L1 C3L C2L H2L2 205.5 160.8
C3' C3L H3L1 H3L2 237.2 123.6
H3L1 C3L C3' O3' 35.4 220.0
C2L C3L H3L2 C3' 114.5 247.3
C2L C3L H3L2 H3L1 237.3 123.7
H3L2 C3L C2L H2L1 64.5 274.1
H3L2 C3L C2L H2L2 315.0 37.1
C3' C3L H3L2 H3L1 122.8 236.4
H3L2 C3L C3' O3' 285.8 343.7
O2L C2L H2L1 C3L 238.3 114.1
O2L C2L H2L1 H2L2 119.1 237.0
H2L1 C2L C3L C3' 189.7 156.0
H2L1 C2L C3L H3L1 315.0 37.8
H2L1 C2L C3L H3L2 64.5 274.1
C3L C2L H2L1 H2L2 240.8 123.0
O2L C2L H2L2 C3L 121.7 245.9
O2L C2L H2L2 H2L1 240.8 123.0
H2L2 C2L C3L C3' 80.3 279.0
H2L2 C2L C3L H3L1 205.5 160.8
H2L2 C2L C3L H3L2 315.0 37.1
C3L C2L H2L2 H2L1 119.2 237.1
O3' C3' C4' H4' 342.8 333.5
C4' C3' O3' C2' 115.2 117.7
C4' C3' O3' C3L 234.6 236.1
O3' C3' C2' H2' 346.5 358.3
C2' C3' O3' C3L 119.5 118.4
O3' C3' C3L H3L1 35.4 220.0
O3' C3' C3L H3L2 285.8 343.7