PDB Chemical Component TKW
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TKW
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| NAA |
CAN |
1.319 |
1.376 |
| CAN |
NAK |
1.343 |
1.327 |
| CAN |
CAO |
1.376 |
1.413 |
| NAK |
CAP |
1.347 |
1.332 |
| OAF |
PAV |
1.601 |
1.480 |
| OAC |
CAO |
1.348 |
1.363 |
| CAO |
CAI |
1.350 |
1.356 |
| OAB |
CAP |
1.225 |
1.220 |
| CAP |
NAU |
1.356 |
1.346 |
| OAH |
PAV |
1.582 |
1.610 |
| PAV |
O5' |
1.616 |
1.611 |
| PAV |
OAG |
1.599 |
1.610 |
| CAI |
NAU |
1.381 |
1.366 |
| NAU |
C1' |
1.504 |
1.465 |
| C5' |
O5' |
1.433 |
1.429 |
| C5' |
C4' |
1.519 |
1.530 |
| O4' |
C4' |
1.446 |
1.444 |
| O4' |
C1' |
1.462 |
1.445 |
| C4' |
C3' |
1.505 |
1.545 |
| C1' |
C2' |
1.524 |
1.544 |
| C2' |
C3' |
1.540 |
1.545 |
| C2' |
O2' |
1.411 |
1.429 |
| C3' |
O3' |
1.466 |
1.429 |
| OAG |
H1 |
0.950 |
0.967 |
| OAH |
H2 |
0.950 |
0.967 |
| C5' |
H3 |
1.100 |
1.090 |
| C5' |
H4 |
1.100 |
1.090 |
| C4' |
H5 |
1.100 |
1.091 |
| C3' |
H6 |
1.100 |
1.091 |
| O3' |
H7 |
0.950 |
0.967 |
| C2' |
H8 |
1.100 |
1.090 |
| O2' |
H9 |
0.950 |
0.966 |
| C1' |
H10 |
1.100 |
1.090 |
| NAA |
H11 |
1.000 |
0.970 |
| NAA |
H12 |
1.000 |
0.970 |
| OAC |
H13 |
0.950 |
0.967 |
| CAI |
H14 |
1.080 |
1.080 |
Bond Angles for TKW
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NAA |
CAN |
CAO |
116.3 |
120.2 |
| CAN |
CAO |
CAI |
119.0 |
119.0 |
| OAF |
PAV |
O5' |
105.9 |
109.4 |
| OAF |
PAV |
OAG |
112.1 |
109.5 |
| OAC |
CAO |
CAI |
123.1 |
120.5 |
| CAO |
CAI |
H14 |
119.6 |
120.5 |
| OAH |
PAV |
O5' |
108.1 |
109.5 |
| OAG |
PAV |
O5' |
104.6 |
109.4 |
| PAV |
OAG |
H1 |
109.5 |
114.0 |
| NAU |
C1' |
H10 |
108.3 |
110.4 |
| C5' |
C4' |
C3' |
108.0 |
110.4 |
| C4' |
C5' |
H3 |
110.7 |
109.4 |
| C4' |
C5' |
H4 |
110.8 |
109.5 |
| C5' |
C4' |
H5 |
110.1 |
110.3 |
| O4' |
C4' |
C3' |
108.4 |
104.8 |
| O4' |
C4' |
H5 |
111.2 |
110.4 |
| O4' |
C1' |
C2' |
106.8 |
104.8 |
| O4' |
C1' |
H10 |
108.8 |
110.4 |
| C4' |
C3' |
O3' |
110.5 |
110.5 |
| C3' |
C4' |
H5 |
110.3 |
110.4 |
| C4' |
C3' |
H6 |
110.0 |
110.5 |
| C1' |
C2' |
H8 |
110.0 |
110.6 |
| C2' |
C3' |
H6 |
109.6 |
110.6 |
| O2' |
C2' |
H8 |
111.7 |
110.4 |
| C2' |
O2' |
H9 |
109.5 |
114.0 |
| O3' |
C3' |
H6 |
110.6 |
110.5 |
| C3' |
O3' |
H7 |
109.5 |
114.0 |
| H3 |
C5' |
H4 |
109.5 |
109.5 |
| H11 |
NAA |
H12 |
120.0 |
120.0 |
Torsion Angles for TKW
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NAA |
CAN |
CAO |
CAI |
180.7 |
179.7 |
| OAC |
CAO |
CAN |
CAI |
179.5 |
180.3 |
| CAN |
CAO |
CAI |
H14 |
178.5 |
180.0 |
| OAH |
PAV |
OAF |
O5' |
118.4 |
240.0 |
| OAG |
PAV |
OAF |
O5' |
246.6 |
120.0 |
| OAF |
PAV |
OAG |
H1 |
360.0 |
180.0 |
| CAN |
CAO |
OAC |
CAI |
180.5 |
179.7 |
| OAC |
CAO |
CAI |
H14 |
359.0 |
359.7 |
| CAP |
NAU |
C1' |
H10 |
181.7 |
175.8 |
| OAF |
PAV |
OAH |
O5' |
242.9 |
120.0 |
| OAG |
PAV |
OAH |
O5' |
114.7 |
240.0 |
| OAH |
PAV |
OAG |
H1 |
128.9 |
59.9 |
| OAF |
PAV |
O5' |
OAG |
241.4 |
120.0 |
| O5' |
PAV |
OAG |
H1 |
245.7 |
299.9 |
| OAF |
PAV |
OAG |
O5' |
114.2 |
240.1 |
| OAH |
PAV |
OAG |
O5' |
243.2 |
120.0 |
| CAI |
NAU |
C1' |
H10 |
4.9 |
355.5 |
| O4' |
C1' |
NAU |
H10 |
242.8 |
237.7 |
| NAU |
C1' |
C2' |
H8 |
29.1 |
24.1 |
| O4' |
C4' |
C5' |
C3' |
242.6 |
244.6 |
| O4' |
C4' |
C5' |
H5 |
122.1 |
122.3 |
| C5' |
C4' |
C3' |
O3' |
147.3 |
98.5 |
| C3' |
C4' |
C5' |
H5 |
239.5 |
237.7 |
| C5' |
C4' |
C3' |
H6 |
24.9 |
335.9 |
| H3 |
C5' |
C4' |
H4 |
121.7 |
120.0 |
| C5' |
C4' |
O4' |
C3' |
117.2 |
118.9 |
| O4' |
C4' |
C5' |
H3 |
33.2 |
309.6 |
| O4' |
C4' |
C5' |
H4 |
271.5 |
189.6 |
| C5' |
C4' |
O4' |
H5 |
238.6 |
237.8 |
| O4' |
C4' |
C3' |
O3' |
264.9 |
217.4 |
| C3' |
C4' |
O4' |
H5 |
121.4 |
118.9 |
| O4' |
C4' |
C3' |
H6 |
142.6 |
94.8 |
| NAU |
C1' |
O4' |
H10 |
116.9 |
122.3 |
| C1' |
O4' |
C4' |
C3' |
350.0 |
40.5 |
| C1' |
O4' |
C4' |
H5 |
228.6 |
281.6 |
| O4' |
C1' |
C2' |
H8 |
268.9 |
265.3 |
| C3' |
C4' |
C5' |
H3 |
150.6 |
65.0 |
| C3' |
C4' |
C5' |
H4 |
28.9 |
305.0 |
| C5' |
C4' |
C3' |
H5 |
120.4 |
122.2 |
| O4' |
C4' |
C3' |
H5 |
238.0 |
241.1 |
| C2' |
C3' |
C4' |
H6 |
243.3 |
241.2 |
| O3' |
C3' |
C4' |
H6 |
122.4 |
122.6 |
| C4' |
C3' |
O3' |
H7 |
180.0 |
180.0 |
| O4' |
C1' |
C2' |
H10 |
116.9 |
118.8 |
| C1' |
C2' |
C3' |
H6 |
211.9 |
241.3 |
| O2' |
C2' |
C1' |
H8 |
234.4 |
237.4 |
| C1' |
C2' |
O2' |
H9 |
180.0 |
183.9 |
| O4' |
C1' |
C2' |
C3' |
26.1 |
24.0 |
| C2' |
C3' |
C4' |
H5 |
147.9 |
95.0 |
| C4' |
C3' |
C2' |
H6 |
117.0 |
118.6 |
| O3' |
C3' |
C2' |
H6 |
236.3 |
237.3 |
| C2' |
C3' |
O3' |
H7 |
65.3 |
65.4 |
| O4' |
C1' |
C2' |
O2' |
143.2 |
142.7 |
| C1' |
C2' |
O2' |
H8 |
124.7 |
122.7 |
| O2' |
C2' |
C3' |
H6 |
91.8 |
122.7 |
| O3' |
C3' |
C4' |
H5 |
26.9 |
336.3 |
| C4' |
C3' |
O3' |
H6 |
238.0 |
237.4 |
| C2' |
C3' |
O3' |
H6 |
123.2 |
122.8 |
| H1 |
OAG |
PAV |
O5' |
245.7 |
299.9 |
| H2 |
OAH |
PAV |
O5' |
117.1 |
180.0 |
| H3 |
C5' |
C4' |
C3' |
150.6 |
65.0 |
| C4' |
C5' |
H3 |
H4 |
237.6 |
240.0 |
| H3 |
C5' |
C4' |
H5 |
271.1 |
187.3 |
| H4 |
C5' |
C4' |
C3' |
28.9 |
305.0 |
| C4' |
C5' |
H4 |
H3 |
122.4 |
120.0 |
| H4 |
C5' |
C4' |
H5 |
149.4 |
67.3 |
| C5' |
C4' |
H5 |
C3' |
240.9 |
237.7 |
| H5 |
C4' |
C5' |
H3 |
271.1 |
187.3 |
| H5 |
C4' |
C5' |
H4 |
149.4 |
67.3 |
| O4' |
C4' |
H5 |
C3' |
120.3 |
115.5 |
| H5 |
C4' |
C3' |
O3' |
26.9 |
336.3 |
| H5 |
C4' |
C3' |
H6 |
264.6 |
213.7 |
| C4' |
C3' |
H6 |
O3' |
122.3 |
122.6 |
| H6 |
C3' |
C4' |
H5 |
264.6 |
213.7 |
| H6 |
C3' |
O3' |
H7 |
302.1 |
302.6 |
| H7 |
O3' |
C3' |
H6 |
302.1 |
302.6 |
| H8 |
C2' |
C3' |
H6 |
329.3 |
0.1 |
| H8 |
C2' |
O2' |
H9 |
55.3 |
61.2 |
| H9 |
O2' |
C2' |
H8 |
55.3 |
61.2 |
| O4' |
C1' |
H10 |
C2' |
244.4 |
244.6 |
| H10 |
C1' |
C2' |
H8 |
152.0 |
146.5 |
| H11 |
NAA |
CAN |
CAO |
179.9 |
180.1 |
| H12 |
NAA |
CAN |
CAO |
359.8 |
0.0 |
| H13 |
OAC |
CAO |
CAI |
359.5 |
180.3 |